Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.753 Acer truncatum HOM05D004178 ORTHO05D005204 3.9e-154 548.1 280 100.0
Ciclev10004204m.g Citrus clementina HOM05D004178 ORTHO05D005204 1.3e-122 443.4 280 79.6
Dinv06570 Davidia involucrata HOM05D004178 ORTHO05D005204 1.3e-120 436.8 278 80.2
Thecc.03G153700 Theobroma cacao HOM05D004178 ORTHO05D005204 2.1e-120 436.0 277 79.1
TWI14G1279 Tripterygium wilfordii HOM05D004178 ORTHO05D005204 2.1e-120 436.0 278 79.5
GSVIVG01013865001 Vitis vinifera HOM05D004178 ORTHO05D005204 8.1e-120 434.1 276 80.8
Sed0013674 Sechium edule HOM05D004178 ORTHO05D005204 3.1e-119 432.2 278 78.8
Sopen05g030150 Solanum pennellii HOM05D004178 ORTHO05D005204 1.2e-118 430.3 278 78.4
ClCG07G016820 Citrullus lanatus HOM05D004178 ORTHO05D005204 1.5e-118 429.9 278 78.4
CsaV3_4G004020 Cucumis sativus L. HOM05D004178 ORTHO05D005204 2.0e-118 429.5 278 78.4
Nn6g33950 Nelumbo nucifera HOM05D004178 ORTHO05D005204 1.7e-117 426.4 278 77.3
Solyc05g051680.4 Solanum lycopersicum HOM05D004178 ORTHO05D005204 4.9e-117 424.9 278 77.7
MELO3C017663.2 Cucumis melo HOM05D004178 ORTHO05D005204 8.4e-117 424.1 278 78.1
Thhalv10003566m.g Eutrema salsugineum HOM05D004178 ORTHO05D005204 1.4e-116 423.3 277 77.3
A03p47060 Brassica napus HOM05D004178 ORTHO05D005204 1.9e-116 422.9 277 76.5
BraA03t13829Z Brassica rapa HOM05D004178 ORTHO05D005204 1.9e-116 422.9 277 76.5
Carub.0008s2215 Capsella rubella HOM05D004178 ORTHO05D005204 1.9e-116 422.9 277 76.9
Peaxi162Scf00167g00610 Petunia axillaris HOM05D004178 ORTHO05D005204 1.9e-116 422.9 278 77.0
C07p45140 Brassica napus HOM05D004178 ORTHO05D005204 2.4e-116 422.5 277 76.5
Cfa008151 Carpinus fangiana HOM05D004178 ORTHO05D005204 2.4e-116 422.5 278 77.7
Potri.003G107700 Populus trichocarpa HOM05D004178 ORTHO05D005204 2.4e-116 422.5 278 78.1
BcaC06g33151 Brassica carinata HOM05D004178 ORTHO05D005204 7.1e-116 421.0 277 75.5
AL8G38150 Arabidopsis lyrata HOM05D004178 ORTHO05D005204 9.3e-116 420.6 277 76.2
BcaC06g33236 Brassica carinata HOM05D004178 ORTHO05D005204 9.3e-116 420.6 277 76.2
BolC7t45036H Brassica oleracea HOM05D004178 ORTHO05D005204 9.3e-116 420.6 277 76.2
Sp2g24660 Schrenkiella parvula HOM05D004178 ORTHO05D005204 9.3e-116 420.6 277 75.8
CiPaw.03G020700 Carya illinoinensis HOM05D004178 ORTHO05D005204 4.6e-115 418.3 276 77.9
Actinidia13583 Actinidia chinensis HOM05D004178 ORTHO05D005204 6.0e-115 417.9 278 76.3
AT5G61460 Arabidopsis thaliana HOM05D004178 ORTHO05D005204 6.0e-115 417.9 277 75.8
CSS0036077 Camellia sinensis var. sinensis HOM05D004178 ORTHO05D005204 1.3e-114 416.8 278 74.8
Manes.06G133600 Manihot esculenta HOM05D004178 ORTHO05D005204 1.8e-114 416.4 278 77.3
CARHR275220 Cardamine hirsuta HOM05D004178 ORTHO05D005204 3.9e-114 415.2 277 74.7
Aa31LG11G1940 Aethionema arabicum HOM05D004178 ORTHO05D005204 5.1e-114 414.8 277 75.5
CAN.G515.10 Capsicum annuum HOM05D004178 ORTHO05D005204 6.7e-114 414.5 278 75.5
Eucgr.A02900 Eucalyptus grandis HOM05D004178 ORTHO05D005204 8.7e-114 414.1 278 76.6
Gorai.008G215500 Gossypium raimondii HOM05D004178 ORTHO05D005204 1.9e-113 412.9 277 75.8
Gohir.A12G197800 Gossypium hirsutum HOM05D004178 ORTHO05D005204 1.6e-112 409.8 277 75.1
RcHm_v2.0_Chr1g0374131 Rosa chinensis HOM05D004178 ORTHO05D005204 1.1e-111 407.1 278 73.7
MSTRG.8830 Avicennia marina HOM05D004178 ORTHO05D005204 1.4e-111 406.8 278 74.8
FAN01G0652 Fragaria x ananassa HOM05D004178 ORTHO05D005204 1.8e-111 406.4 278 73.4
CDE11G0310 Ceratophyllum demersum HOM05D004178 ORTHO05D005204 4.0e-111 405.2 276 74.3
DCAR_014619 Daucus carota HOM05D004178 ORTHO05D005204 4.0e-111 405.2 278 75.5
Gohir.D12G200300 Gossypium hirsutum HOM05D004178 ORTHO05D005204 5.3e-111 404.8 277 75.1
FvH4_7g27291 Fragaria vesca HOM05D004178 ORTHO05D005204 5.8e-110 401.4 278 73.0
FAN06G0596 Fragaria x ananassa HOM05D004178 ORTHO05D005204 5.8e-110 401.4 278 73.0
MD07G1252300 Malus domestica HOM05D004178 ORTHO05D005204 1.3e-109 400.2 278 72.7
FAN10G1085 Fragaria x ananassa HOM05D004178 ORTHO05D005204 1.7e-109 399.8 284 72.2
Sabra03G0074500 Salix brachista HOM05D004178 ORTHO05D005204 2.2e-109 399.4 263 77.9
FAN06G2180 Fragaria x ananassa HOM05D004178 ORTHO05D005204 4.9e-109 398.3 278 72.7
Aqoxy5G03870 Aquilegia oxysepala HOM05D004178 ORTHO05D005204 7.1e-108 394.4 278 70.5
Thhalv10012532m.g Eutrema salsugineum HOM05D004178 ORTHO05D005204 7.1e-108 394.4 277 71.8
AT5G07660 Arabidopsis thaliana HOM05D004178 ORTHO05D005204 3.5e-107 392.1 270 71.5
QL09p005323 Quercus lobata HOM05D004178 ORTHO05D005204 1.3e-106 390.2 261 77.0
Cc02_g04400 Coffea canephora HOM05D004178 ORTHO05D005204 3.0e-106 389.0 278 70.9
Rhsim03G0166000 Rhododendron simsii HOM05D004178 ORTHO05D005204 1.9e-105 386.3 266 75.6
Sc19g0002080 Simmondsia chinensis HOM05D004178 ORTHO05D005204 1.9e-105 386.3 277 70.8
Hund11836 Selenicereus undatus HOM05D004178 ORTHO05D005204 3.3e-105 385.6 266 72.9
Migut.F00486 Erythranthe guttata HOM05D004178 ORTHO05D005204 5.7e-105 384.8 278 73.7
VMungo1127G0288 Vigna mungo HOM05D004178 ORTHO05D005204 7.4e-105 384.4 278 70.9
Carub.0006s0663 Capsella rubella HOM05D004178 ORTHO05D005204 1.4e-103 380.2 279 68.8
HanXRQChr01g0028141 Helianthus annuus HOM05D004178 ORTHO05D005204 1.4e-103 380.2 277 70.8
Nitab4.5_0000818g0230 Nicotiana tabacum HOM05D004178 ORTHO05D005204 1.4e-103 380.2 278 70.9
BcaB05g21602 Brassica carinata HOM05D004178 ORTHO05D005204 9.0e-103 377.5 277 69.3
Phvul.011G007300 Phaseolus vulgaris HOM05D004178 ORTHO05D005204 1.2e-102 377.1 278 69.8
ECA232G0935 Erigeron canadensis HOM05D004178 ORTHO05D005204 2.6e-102 375.9 277 70.4
PGR042G0822 Punica granatum HOM05D004178 ORTHO05D005204 4.5e-102 375.2 278 69.4
BraA02t04928Z Brassica rapa HOM05D004178 ORTHO05D005204 5.8e-102 374.8 277 69.3
Glyma.09G229900 Glycine max HOM05D004178 ORTHO05D005204 5.8e-102 374.8 278 70.1
Lj1C978G4 Lonicera japonica HOM05D004178 ORTHO05D005204 7.6e-102 374.4 280 72.5
PSO063G1916 Papaver somniferum HOM05D004178 ORTHO05D005204 7.6e-102 374.4 278 69.1
SGA_v2.0_scaffold2G01219 Striga asiatica HOM05D004178 ORTHO05D005204 7.6e-102 374.4 278 70.1
Psat7g194520 Pisum sativum HOM05D004178 ORTHO05D005204 3.8e-101 372.1 278 68.3
BcaNung06187 Brassica carinata HOM05D004178 ORTHO05D005204 8.4e-101 370.9 277 68.6
FAN03G3201 Fragaria x ananassa HOM05D004178 ORTHO05D005204 4.2e-100 368.6 294 67.0
Lalb_Chr19g0140351 Lupinus albus HOM05D004178 ORTHO05D005204 1.6e-99 366.7 278 68.7
PSO782G3243 Papaver somniferum HOM05D004178 ORTHO05D005204 2.3e-98 362.8 278 66.5
ATR0317G120 Amborella trichopoda HOM05D004178 ORTHO05D005204 3.0e-98 362.5 260 71.2
Zm00001eb309160 Zea mays HOM05D004178 ORTHO05D005204 6.7e-98 361.3 276 65.9
HPP92_022331 Vanilla planifolia HOM05D004178 ORTHO05D005204 1.9e-97 359.8 278 64.7
HPP92_022323 Vanilla planifolia HOM05D004178 ORTHO05D005204 5.7e-97 358.2 278 64.4
Lj3g0020737 Lotus japonicus HOM05D004178 ORTHO05D005204 1.4e-95 353.6 278 65.5
Medtr4g036760 Medicago truncatula HOM05D004178 ORTHO05D005204 3.1e-95 352.4 278 65.8
Medtr4g061050 Medicago truncatula HOM05D004178 ORTHO05D005204 5.9e-94 348.2 278 64.7
FAN03G2333 Fragaria x ananassa HOM05D004178 ORTHO05D005204 1.3e-93 347.1 278 66.2
SEGI_03190 Sequoiadendron giganteum HOM05D004178 ORTHO05D005204 1.3e-93 347.1 260 68.5
TPR.G3678 Trifolium pratense HOM05D004178 ORTHO05D005204 1.7e-93 346.7 278 63.7
TPR.G2991 Trifolium pratense HOM05D004178 ORTHO05D005204 2.2e-93 346.3 272 65.1
C02p03240 Brassica napus HOM05D004178 ORTHO05D005204 1.4e-92 343.6 259 67.2
Lsat_1_v5_gn_9_51940 Lactuca sativa HOM05D004178 ORTHO05D005204 3.6e-91 339.0 261 68.6
arahy.Tifrunner.gnm1.ann1.2YP1UN Arachis hypogaea HOM05D004178 ORTHO05D005204 1.0e-90 337.4 316 57.9
AUR62015432 Chenopodium quinoa HOM05D004178 ORTHO05D005204 2.3e-90 336.3 266 65.8
vmacro06815 Vaccinium macrocarpon HOM05D004178 ORTHO05D005204 5.1e-90 335.1 323 58.5
Duzib084G0917 Durio zibethinus HOM05D004178 ORTHO05D005204 1.1e-89 334.0 279 64.2
arahy.Tifrunner.gnm1.ann1.D3FWW6 Arachis hypogaea HOM05D004178 ORTHO05D005204 3.3e-89 332.4 316 57.0
CANSAT56G2947 Cannabis sativa HOM05D004178 ORTHO05D005204 3.3e-89 332.4 278 63.3
Haze_13892 Corylus avellana HOM05D004178 ORTHO05D005204 9.7e-89 330.9 229 74.2
Oeu021707.2 Olea europaea HOM05D004178 ORTHO05D005204 1.4e-87 327.0 312 57.7
TAR375G0252 Trochodendron aralioides HOM05D004178 ORTHO05D005204 1.3e-85 320.5 218 73.9
EL10Ac3g05856 Beta vulgaris HOM05D004178 ORTHO05D005204 5.0e-85 318.5 304 55.6
FAN10G0409 Fragaria x ananassa HOM05D004178 ORTHO05D005204 1.1e-84 317.4 249 66.7
SalBow5G4122 Salvia bowleyana HOM05D004178 ORTHO05D005204 1.2e-83 313.9 278 62.9
AL6G18010 Arabidopsis lyrata HOM05D004178 ORTHO05D005204 9.4e-76 287.7 178 79.2
Pp3c11_11190 Physcomitrium patens HOM05D004178 ORTHO05D005204 2.0e-73 280.0 281 52.7
Nitab4.5_0003647g0020 Nicotiana tabacum HOM05D004178 ORTHO05D005204 1.7e-72 276.9 279 57.3
SMO364G0410 Selaginella moellendorffii HOM05D004178 ORTHO05D005204 2.0e-70 270.0 276 51.1
Ah.07g207660 Amaranthus hybridus HOM05D004178 ORTHO05D005204 2.6e-70 269.6 276 53.6
Prupe.2G275800 Prunus persica HOM05D004178 ORTHO05D005204 1.5e-68 263.8 197 69.0
Ca_27645_v3 Cicer arietinum L. HOM05D004178 ORTHO05D005204 3.1e-63 246.1 154 79.9
Mapoly0003s0057 Marchantia polymorpha HOM05D004178 ORTHO05D005204 2.0e-62 243.4 280 45.7
AagrBONN_evm.TU.Sc2ySwM_228.971 Anthoceros agrestis HOM05D004178 ORTHO05D005204 1.3e-56 224.2 259 48.3
Cpa.g.sc121.1 Carica papaya HOM05D004178 ORTHO05D005204 2.6e-49 199.9 114 86.8
CBR_g34600 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-47 193.7 283 37.8
CARHR205510 Cardamine hirsuta HOM05D004178 ORTHO05D005204 4.3e-44 182.6 108 82.4
GSVIVG01014042001 Vitis vinifera HOM05D004178 ORTHO05D005204 1.6e-43 180.6 129 72.1
MCO11G708 Micromonas commoda HOM05D004178 ORTHO05D005204 3.3e-28 129.8 184 38.6
GSVIVG01014044001 Vitis vinifera HOM05D004178 ORTHO05D005204 2.8e-27 126.7 73 87.7
unitig_37.g12493 Utricularia gibba HOM05D004178 ORTHO05D005204 4.4e-25 119.4 185 40.0
PRCOL_00006025 Prasinoderma coloniale HOM05D004178 ORTHO05D005204 2.2e-24 117.1 241 29.9
Cre12.g525050 Chlamydomonas reinhardtii HOM05D004178 ORTHO05D005204 1.2e-17 94.7 214 30.4
AUR62042656 Chenopodium quinoa HOM05D004178 ORTHO05D005204 4.2e-15 86.3 53 81.1
Cfa025728 Carpinus fangiana HOM05D004178 ORTHO05D005204 1.7e-13 80.9 272 24.6
QL07p015796 Quercus lobata HOM05D004178 ORTHO05D005204 5.1e-13 79.3 105 51.4
Haze_26632 Corylus avellana HOM05D004178 ORTHO05D005204 8.7e-13 78.6 73 50.7
Cre12.g525100 Chlamydomonas reinhardtii HOM05D004178 ORTHO05D005204 5.6e-12 75.9 260 27.3
HanXRQChr01g0007751 Helianthus annuus HOM05D005087 ORTHO05D006427 6.4e-08 62.4 254 24.4
Thhalv10012535m.g Eutrema salsugineum HOM05D005087 ORTHO05D006427 7.1e-07 58.9 268 22.0
Solyc01g087720.4 Solanum lycopersicum HOM05D005087 ORTHO05D006427 1.2e-06 58.2 243 25.9
ECA248G2604 Erigeron canadensis HOM05D005087 ORTHO05D006427 1.6e-06 57.8 250 24.0
Lsat_1_v5_gn_1_103161 Lactuca sativa HOM05D005087 ORTHO05D006427 1.6e-06 57.8 285 23.2
Peaxi162Scf00694g00319 Petunia axillaris HOM05D005087 ORTHO05D006427 2.7e-06 57.0 243 26.3
Sopen01g034670 Solanum pennellii HOM05D005087 ORTHO05D006427 2.7e-06 57.0 243 25.9
AL6G26800 Arabidopsis lyrata HOM05D005087 ORTHO05D006427 4.6e-06 56.2 268 22.0
Carub.0006s1411 Capsella rubella HOM05D005087 ORTHO05D006427 6.0e-06 55.8 268 21.6
MD07G1021900 Malus domestica HOM05D005087 ORTHO05D006427 6.0e-06 55.8 271 23.6
PSO339G3397 Papaver somniferum HOM05D005087 ORTHO05D006427 7.9e-06 55.5 165 27.3
GSVIVG01014041001 Vitis vinifera HOM05D004178 ORTHO05D005204 7.9e-06 55.5 42 64.3


User provided reference genes

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