Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.1 Acer truncatum HOM05D003148 ORTHO05D003894 4.0e-37 157.5 77 100.0
Hma1.2p1_0938F.1_g239220 Hydrangea macrophylla HOM05D003148 ORTHO05D003894 1.3e-30 136.0 77 88.3
QL08p011843 Quercus lobata HOM05D003148 ORTHO05D003894 1.3e-30 136.0 76 88.2
CiPaw.11G187400 Carya illinoinensis HOM05D003148 ORTHO05D003894 4.8e-30 134.0 77 85.7
CiPaw.12G128200 Carya illinoinensis HOM05D003148 ORTHO05D003894 6.2e-30 133.7 77 85.7
ClCG10G005550 Citrullus lanatus HOM05D003148 ORTHO05D003894 6.2e-30 133.7 77 85.7
MELO3C025395.2 Cucumis melo HOM05D003148 ORTHO05D003894 6.2e-30 133.7 77 85.7
Atru.chr2.3280 Acer truncatum HOM05D003148 ORTHO05D003894 1.1e-29 132.9 77 87.0
Actinidia09911 Actinidia chinensis HOM05D003148 ORTHO05D003894 1.4e-29 132.5 77 85.7
Actinidia35330 Actinidia chinensis HOM05D003148 ORTHO05D003894 1.4e-29 132.5 77 85.7
Oeu062600.1 Olea europaea HOM05D003148 ORTHO05D003894 1.4e-29 132.5 77 84.4
Ciclev10007282m.g Citrus clementina HOM05D003148 ORTHO05D003894 1.8e-29 132.1 77 85.7
Rhsim06G0215400 Rhododendron simsii HOM05D003148 ORTHO05D003894 1.8e-29 132.1 77 85.7
Lalb_Chr04g0248571 Lupinus albus HOM05D003148 ORTHO05D003894 2.4e-29 131.7 77 83.1
Rhsim04G0002300 Rhododendron simsii HOM05D003148 ORTHO05D003894 2.4e-29 131.7 77 84.4
RhsimUnG0252100 Rhododendron simsii HOM05D003148 ORTHO05D003894 2.4e-29 131.7 77 84.4
Cc05_g13530 Coffea canephora HOM05D003148 ORTHO05D003894 3.1e-29 131.3 77 84.4
Lj8A168T100 Lonicera japonica HOM05D003148 ORTHO05D003894 3.1e-29 131.3 77 84.4
GSVIVG01014163001 Vitis vinifera HOM05D003148 ORTHO05D003894 3.1e-29 131.3 77 84.4
CsaV3_3G005270 Cucumis sativus L. HOM05D003148 ORTHO05D003894 5.3e-29 130.6 77 84.4
Glyma.02G289700 Glycine max HOM05D003148 ORTHO05D003894 5.3e-29 130.6 77 83.1
Glyma.14G025300 Glycine max HOM05D003148 ORTHO05D003894 5.3e-29 130.6 77 83.1
Aqoxy3G04136 Aquilegia oxysepala HOM05D003148 ORTHO05D003894 6.9e-29 130.2 77 84.4
SGA_v2.0_scaffold9G05063 Striga asiatica HOM05D003148 ORTHO05D003894 9.0e-29 129.8 77 84.4
VMungo0647G1963 Vigna mungo HOM05D003148 ORTHO05D003894 9.0e-29 129.8 77 83.1
FvH4_3g22230 Fragaria vesca HOM05D003148 ORTHO05D003894 1.2e-28 129.4 77 84.4
FAN11G2520 Fragaria x ananassa HOM05D003148 ORTHO05D003894 1.2e-28 129.4 77 84.4
FAN21G1173 Fragaria x ananassa HOM05D003148 ORTHO05D003894 1.2e-28 129.4 77 84.4
Lj1C869T19 Lonicera japonica HOM05D003148 ORTHO05D003894 2.0e-28 128.6 77 83.1
Phvul.008G265700 Phaseolus vulgaris HOM05D003148 ORTHO05D003894 2.0e-28 128.6 77 81.8
vmacro09733 Vaccinium macrocarpon HOM05D003148 ORTHO05D003894 2.6e-28 128.3 77 83.1
MSTRG.12966 Avicennia marina HOM05D003148 ORTHO05D003894 3.4e-28 127.9 77 80.5
CSS0045288 Camellia sinensis var. sinensis HOM05D003148 ORTHO05D003894 3.4e-28 127.9 77 81.8
Haze_09651 Corylus avellana HOM05D003148 ORTHO05D003894 3.4e-28 127.9 77 81.8
FAN16G3453 Fragaria x ananassa HOM05D003148 ORTHO05D003894 3.4e-28 127.9 77 83.1
Potri.011G136900 Populus trichocarpa HOM05D003148 ORTHO05D003894 3.4e-28 127.9 77 83.1
Prupe.4G209500 Prunus persica HOM05D003148 ORTHO05D003894 3.4e-28 127.9 77 83.1
Sabra11G0122800 Salix brachista HOM05D003148 ORTHO05D003894 3.4e-28 127.9 77 83.1
TWI38G0810 Tripterygium wilfordii HOM05D003148 ORTHO05D003894 3.4e-28 127.9 77 83.1
Aa31LG8G7340 Aethionema arabicum HOM05D003148 ORTHO05D003894 4.5e-28 127.5 77 81.8
BcaB02g11185 Brassica carinata HOM05D003148 ORTHO05D003894 4.5e-28 127.5 77 80.5
Lalb_Chr18g0049911 Lupinus albus HOM05D003148 ORTHO05D003894 4.5e-28 127.5 77 81.8
Sabra16G0286100 Salix brachista HOM05D003148 ORTHO05D003894 4.5e-28 127.5 77 81.8
AL1G58530 Arabidopsis lyrata HOM05D003148 ORTHO05D003894 5.8e-28 127.1 77 80.5
Cfa020382 Carpinus fangiana HOM05D003148 ORTHO05D003894 5.8e-28 127.1 77 81.8
Thhalv10011195m.g Eutrema salsugineum HOM05D003148 ORTHO05D003894 5.8e-28 127.1 77 80.5
Thhalv10019969m.g Eutrema salsugineum HOM05D003148 ORTHO05D003894 7.6e-28 126.7 77 80.5
Sp3g18540 Schrenkiella parvula HOM05D003148 ORTHO05D003894 7.6e-28 126.7 77 81.8
AT1G50840 Arabidopsis thaliana HOM05D003148 ORTHO05D003894 1.0e-27 126.3 77 80.5
BcaC05g27391 Brassica carinata HOM05D003148 ORTHO05D003894 1.0e-27 126.3 77 79.2
A05p19930 Brassica napus HOM05D003148 ORTHO05D003894 1.0e-27 126.3 77 79.2
C05p33280 Brassica napus HOM05D003148 ORTHO05D003894 1.0e-27 126.3 77 79.2
BolC5t32054H Brassica oleracea HOM05D003148 ORTHO05D003894 1.0e-27 126.3 77 79.2
BraA05t20898Z Brassica rapa HOM05D003148 ORTHO05D003894 1.0e-27 126.3 77 79.2
Carub.0003s2050 Capsella rubella HOM05D003148 ORTHO05D003894 1.0e-27 126.3 77 81.8
Cpa.g.sc97.33 Carica papaya HOM05D003148 ORTHO05D003894 1.0e-27 126.3 77 83.1
Lj4g0014990 Lotus japonicus HOM05D003148 ORTHO05D003894 1.0e-27 126.3 77 80.5
Medtr5g092100 Medicago truncatula HOM05D003148 ORTHO05D003894 1.0e-27 126.3 77 80.5
RcHm_v2.0_Chr5g0038301 Rosa chinensis HOM05D003148 ORTHO05D003894 1.0e-27 126.3 77 81.8
Hund19099 Selenicereus undatus HOM05D003148 ORTHO05D003894 1.0e-27 126.3 77 81.8
TPR.G29117 Trifolium pratense HOM05D003148 ORTHO05D003894 1.0e-27 126.3 77 80.5
HPP92_009350 Vanilla planifolia HOM05D003148 ORTHO05D003894 1.0e-27 126.3 77 81.8
Psat2g015200 Pisum sativum HOM05D003148 ORTHO05D003894 1.3e-27 125.9 77 80.5
Sp1g37600 Schrenkiella parvula HOM05D003148 ORTHO05D003894 1.3e-27 125.9 77 79.2
AL3G34360 Arabidopsis lyrata HOM05D003148 ORTHO05D003894 1.7e-27 125.6 77 80.5
CSS0016614 Camellia sinensis var. sinensis HOM05D003148 ORTHO05D003894 1.7e-27 125.6 85 76.5
Oeu042923.1 Olea europaea HOM05D003148 ORTHO05D003894 1.7e-27 125.6 77 81.8
THA.LOC104817879 Tarenaya hassleriana HOM05D003148 ORTHO05D003894 1.7e-27 125.6 77 81.8
TAR624G0080 Trochodendron aralioides HOM05D003148 ORTHO05D003894 1.7e-27 125.6 77 80.5
Aa31LG10G3300 Aethionema arabicum HOM05D003148 ORTHO05D003894 2.2e-27 125.2 77 80.5
Carub.0001s3979 Capsella rubella HOM05D003148 ORTHO05D003894 2.2e-27 125.2 77 77.9
AUR62018343 Chenopodium quinoa HOM05D003148 ORTHO05D003894 2.2e-27 125.2 77 81.8
Ca_06307_v3 Cicer arietinum L. HOM05D003148 ORTHO05D003894 2.2e-27 125.2 77 79.2
HanXRQChr05g0159091 Helianthus annuus HOM05D003148 ORTHO05D003894 2.2e-27 125.2 77 81.8
HanXRQChr05g0159101 Helianthus annuus HOM05D003148 ORTHO05D003894 2.2e-27 125.2 77 81.8
HanXRQChr05g0159391 Helianthus annuus HOM05D003148 ORTHO05D003894 2.2e-27 125.2 77 81.8
Nn1g07107 Nelumbo nucifera HOM05D003148 ORTHO05D003894 2.2e-27 125.2 77 81.8
Cfa020383 Carpinus fangiana HOM05D003148 ORTHO05D003894 2.9e-27 124.8 74 81.1
AUR62030324 Chenopodium quinoa HOM05D003148 ORTHO05D003894 3.8e-27 124.4 77 80.5
Potri.001G421300 Populus trichocarpa HOM05D003148 ORTHO05D003894 3.8e-27 124.4 77 80.5
AT3G20540 Arabidopsis thaliana HOM05D003148 ORTHO05D003894 4.9e-27 124.0 77 80.5
C05p43810 Brassica napus HOM05D003148 ORTHO05D003894 4.9e-27 124.0 77 79.2
BolC5t33096H Brassica oleracea HOM05D003148 ORTHO05D003894 4.9e-27 124.0 77 79.2
Ca_14812_v3 Cicer arietinum L. HOM05D003148 ORTHO05D003894 4.9e-27 124.0 77 83.1
COL.COLO4_09635 Corchorus olitorius HOM05D003148 ORTHO05D003894 4.9e-27 124.0 78 82.1
Gohir.A01G078100 Gossypium hirsutum HOM05D003148 ORTHO05D003894 4.9e-27 124.0 77 80.5
Thecc.07G043600 Theobroma cacao HOM05D003148 ORTHO05D003894 4.9e-27 124.0 78 83.3
CARHR096300 Cardamine hirsuta HOM05D003148 ORTHO05D003894 6.5e-27 123.6 77 80.5
DCAR_022553 Daucus carota HOM05D003148 ORTHO05D003894 6.5e-27 123.6 77 81.8
Gohir.D01G065200 Gossypium hirsutum HOM05D003148 ORTHO05D003894 6.5e-27 123.6 77 80.5
Gorai.002G086900 Gossypium raimondii HOM05D003148 ORTHO05D003894 6.5e-27 123.6 77 80.5
Phvul.006G039400 Phaseolus vulgaris HOM05D003148 ORTHO05D003894 6.5e-27 123.6 77 79.2
TPR.G16586 Trifolium pratense HOM05D003148 ORTHO05D003894 6.5e-27 123.6 77 81.8
Zm00001eb431790 Zea mays HOM05D003148 ORTHO05D003894 6.5e-27 123.6 77 80.5
Manes.14G165664 Manihot esculenta HOM05D003148 ORTHO05D003894 8.4e-27 123.2 77 80.5
A05p28320 Brassica napus HOM05D003148 ORTHO05D003894 1.1e-26 122.9 77 77.9
BraA05t21714Z Brassica rapa HOM05D003148 ORTHO05D003894 1.1e-26 122.9 77 77.9
Glyma.08G313300 Glycine max HOM05D003148 ORTHO05D003894 1.1e-26 122.9 77 79.2
MBI02_g28334_MAGBIO Magnolia biondii HOM05D003148 ORTHO05D003894 1.1e-26 122.9 77 80.5
MD11G1221900 Malus domestica HOM05D003148 ORTHO05D003894 1.1e-26 122.9 77 81.8
Os04g0637400 Oryza sativa ssp. japonica HOM05D003148 ORTHO05D003894 1.1e-26 122.9 77 79.2
Solyc07g064330.3 Solanum lycopersicum HOM05D003148 ORTHO05D003894 1.1e-26 122.9 77 80.5
arahy.Tifrunner.gnm1.ann1.FV4ICK Arachis hypogaea HOM05D003148 ORTHO05D003894 1.4e-26 122.5 77 79.2
arahy.Tifrunner.gnm1.ann1.SAW44B Arachis hypogaea HOM05D003148 ORTHO05D003894 1.4e-26 122.5 77 79.2
CDE05G0870 Ceratophyllum demersum HOM05D003148 ORTHO05D003894 1.4e-26 122.5 77 79.2
PSO017G6339 Papaver somniferum HOM05D003148 ORTHO05D003894 1.4e-26 122.5 77 80.5
Nn1g03580 Nelumbo nucifera HOM05D003148 ORTHO05D003894 1.9e-26 122.1 77 79.2
unitig_52.g17354 Utricularia gibba HOM05D003148 ORTHO05D003894 1.9e-26 122.1 77 79.2
Medtr3g050110 Medicago truncatula HOM05D003148 ORTHO05D003894 2.5e-26 121.7 77 80.5
Peaxi162Scf00450g00842 Petunia axillaris HOM05D003148 ORTHO05D003894 2.5e-26 121.7 77 77.9
Zm00001eb414740 Zea mays HOM05D003148 ORTHO05D003894 2.5e-26 121.7 77 79.2
CDE01G0619 Ceratophyllum demersum HOM05D003148 ORTHO05D003894 3.2e-26 121.3 77 79.2
Lsat_1_v5_gn_1_29100 Lactuca sativa HOM05D003148 ORTHO05D003894 3.2e-26 121.3 77 79.2
Nitab4.5_0000397g0350 Nicotiana tabacum HOM05D003148 ORTHO05D003894 3.2e-26 121.3 77 77.9
Nitab4.5_0000622g0240 Nicotiana tabacum HOM05D003148 ORTHO05D003894 3.2e-26 121.3 77 77.9
Sopen07g032480 Solanum pennellii HOM05D003148 ORTHO05D003894 3.2e-26 121.3 77 79.2
PGSC0003DMG402013919 Solanum tuberosum HOM05D003148 ORTHO05D003894 3.2e-26 121.3 77 79.2
CARHR040890 Cardamine hirsuta HOM05D003148 ORTHO05D003894 4.2e-26 120.9 77 77.9
Duzib213G0065 Durio zibethinus HOM05D003148 ORTHO05D003894 4.2e-26 120.9 78 80.8
Migut.H01840 Erythranthe guttata HOM05D003148 ORTHO05D003894 4.2e-26 120.9 77 76.6
Psat5g183240 Pisum sativum HOM05D003148 ORTHO05D003894 4.2e-26 120.9 77 79.2
CAN.G337.107 Capsicum annuum HOM05D003148 ORTHO05D003894 5.5e-26 120.6 77 77.9
Medtr3g050140 Medicago truncatula HOM05D003148 ORTHO05D003894 7.1e-26 120.2 77 79.2
Sc19g0008220 Simmondsia chinensis HOM05D003148 ORTHO05D003894 7.1e-26 120.2 77 77.9
ATR0752G224 Amborella trichopoda HOM05D003148 ORTHO05D003894 9.3e-26 119.8 77 76.6
MSTRG.14430 Avicennia marina HOM05D003148 ORTHO05D003894 9.3e-26 119.8 77 76.6
ECA246G3119 Erigeron canadensis HOM05D003148 ORTHO05D003894 9.3e-26 119.8 77 77.9
PSO541G1561 Papaver somniferum HOM05D003148 ORTHO05D003894 1.2e-25 119.4 77 79.2
PSO675G7850 Papaver somniferum HOM05D003148 ORTHO05D003894 1.2e-25 119.4 77 79.2
Lj6g0019529 Lotus japonicus HOM05D003148 ORTHO05D003894 1.6e-25 119.0 77 77.9
Aqoxy1G03292 Aquilegia oxysepala HOM05D003148 ORTHO05D003894 2.1e-25 118.6 77 79.2
EL10Ac3g07232 Beta vulgaris HOM05D003148 ORTHO05D003894 2.7e-25 118.2 77 77.9
SEGI_28554 Sequoiadendron giganteum HOM05D003148 ORTHO05D003894 3.5e-25 117.9 77 76.6
Os08g0175300 Oryza sativa ssp. japonica HOM05D003148 ORTHO05D003894 7.9e-25 116.7 77 77.9
PGR083G0390 Punica granatum HOM05D003148 ORTHO05D003894 1.3e-24 115.9 78 78.2
Ah.13g076880 Amaranthus hybridus HOM05D001433 ORTHO05D005172 2.3e-24 115.2 71 80.3
Haze_09649 Corylus avellana HOM05D003148 ORTHO05D003894 3.0e-24 114.8 71 81.7
SEGI_38397 Sequoiadendron giganteum HOM05D003148 ORTHO05D003894 3.0e-24 114.8 77 74.0
Eucgr.F00964 Eucalyptus grandis HOM05D003148 ORTHO05D003894 3.9e-24 114.4 78 75.6
Pp3c24_16390 Physcomitrium patens HOM05D003148 ORTHO05D003894 4.8e-22 107.5 77 70.1
Lj6A79G3 Lonicera japonica HOM05D003148 ORTHO05D003894 3.1e-21 104.8 71 73.2
Hund24589 Selenicereus undatus HOM05D003148 ORTHO05D003894 4.1e-21 104.4 72 76.4
SMO356G0432 Selaginella moellendorffii HOM05D003148 ORTHO05D003894 9.0e-21 103.2 77 64.9
Mapoly0039s0093 Marchantia polymorpha HOM05D003148 ORTHO05D003894 1.5e-20 102.4 77 70.1
Pp3c14_14550 Physcomitrium patens HOM05D003148 ORTHO05D003894 5.9e-20 100.5 77 64.9
Pp3c8_21620 Physcomitrium patens HOM05D003148 ORTHO05D003894 5.9e-20 100.5 77 66.2
AagrBONN_evm.TU.Sc2ySwM_228.5326 Anthoceros agrestis HOM05D003148 ORTHO05D003894 1.7e-19 99.0 77 66.2
arahy.Tifrunner.gnm1.ann1.5UV8SN Arachis hypogaea HOM05D003148 ORTHO05D003894 6.5e-19 97.1 56 82.1
arahy.Tifrunner.gnm1.ann1.IVZB0M Arachis hypogaea HOM05D003148 ORTHO05D003894 6.5e-19 97.1 56 82.1
FAN25G2336 Fragaria x ananassa HOM05D003148 ORTHO05D003894 1.4e-18 95.9 56 82.1
vmacro11740 Vaccinium macrocarpon HOM05D003148 ORTHO05D003894 1.4e-18 95.9 55 83.6
Nitab4.5_0013016g0020 Nicotiana tabacum HOM05D003148 ORTHO05D003894 6.7e-16 87.0 56 73.2
Lj6C83G1 Lonicera japonica HOM05D003148 ORTHO05D003894 1.4e-13 79.3 58 74.1
PRCOL_00004766 Prasinoderma coloniale HOM05D003148 ORTHO05D003894 9.1e-13 76.6 81 48.1
arahy.Tifrunner.gnm1.ann1.R7F8PK Arachis hypogaea HOM05D003148 ORTHO05D003894 7.7e-12 73.6 44 81.8
MCO10G006 Micromonas commoda HOM05D003148 ORTHO05D003894 7.7e-12 73.6 78 50.0
PRCOL_00004837 Prasinoderma coloniale HOM05D003148 ORTHO05D003894 5.0e-11 70.9 81 45.7
Rhsim04G0000200 Rhododendron simsii HOM05D000030 ORTHO05D000009 4.6e-09 64.3 55 67.3
Lsat_1_v5_gn_3_87421 Lactuca sativa HOM05D003148 ORTHO05D003894 5.1e-08 60.8 77 49.4


User provided reference genes

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