Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.BG.42.p Acer truncatum HOM05D005707 ORTHO05D007276 0.0e+00 1821.2 898 100.0
Potri.014G165400 Populus trichocarpa HOM05D005707 ORTHO05D007276 0.0e+00 1667.5 943 88.0
Sabra14G0126000 Salix brachista HOM05D005707 ORTHO05D007276 0.0e+00 1659.0 942 87.2
Haze_03608 Corylus avellana HOM05D005707 ORTHO05D007276 0.0e+00 1657.5 938 87.0
Gohir.D11G156360 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1656.7 934 88.1
Cfa007084 Carpinus fangiana HOM05D005707 ORTHO05D007276 0.0e+00 1656.3 938 87.2
GSVIVG01030049001 Vitis vinifera HOM05D005707 ORTHO05D007276 0.0e+00 1656.3 901 90.8
Gorai.007G166700 Gossypium raimondii HOM05D005707 ORTHO05D007276 0.0e+00 1653.6 934 88.0
Manes.12G065301 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1646.7 941 86.8
Ciclev10018207m.g Citrus clementina HOM05D005707 ORTHO05D007276 0.0e+00 1644.4 938 86.9
Dinv07863 Davidia involucrata HOM05D005707 ORTHO05D007276 0.0e+00 1644.0 943 86.6
Gohir.A11G149550 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1643.2 934 87.4
Manes.13G062700 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1640.2 941 86.4
CiPaw.07G002400 Carya illinoinensis HOM05D005707 ORTHO05D007276 0.0e+00 1636.7 938 86.7
Prupe.3G200600 Prunus persica HOM05D005707 ORTHO05D007276 0.0e+00 1629.0 943 85.9
TAR626G1120 Trochodendron aralioides HOM05D005707 ORTHO05D007276 0.0e+00 1626.3 943 84.4
PGR142G3494 Punica granatum HOM05D005707 ORTHO05D007276 0.0e+00 1625.1 939 85.3
FvH4_6g40910 Fragaria vesca HOM05D005707 ORTHO05D007276 0.0e+00 1622.4 938 85.9
FAN14G2372 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1621.3 938 85.8
Duzib138G1526 Durio zibethinus HOM05D005707 ORTHO05D007276 0.0e+00 1620.1 934 86.0
FAN05G2777 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1619.8 938 85.8
Nn1g03422 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1617.8 941 83.7
RcHm_v2.0_Chr2g0156491 Rosa chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1617.4 942 85.5
MD17G1113900 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1615.5 945 85.3
Hma1.2p1_1267F.1_g271460 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1610.1 934 84.7
CANSAT64G1567 Cannabis sativa HOM05D005707 ORTHO05D007276 0.0e+00 1609.7 941 85.0
QL06p053011 Quercus lobata HOM05D005707 ORTHO05D007276 0.0e+00 1609.3 942 85.8
MD09G1123500 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1608.2 945 85.3
TWI75G1501 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1607.4 944 85.0
Eucgr.A01050 Eucalyptus grandis HOM05D005707 ORTHO05D007276 0.0e+00 1604.7 939 84.2
FAN09G4573 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1604.3 938 84.9
FAN02G0692 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1604.0 938 85.0
TWI18G1214 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1602.0 943 84.6
Actinidia09778 Actinidia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1593.9 943 84.7
Nn1g03246 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1592.8 941 82.6
ClCG02G009340 Citrullus lanatus HOM05D005707 ORTHO05D007276 0.0e+00 1590.9 941 83.7
CSS0003308 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1588.2 942 84.1
CSS0049316 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1588.2 942 84.1
Lj1C792T2 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1581.2 925 84.1
MBI16_g36319_MAGBIO Magnolia biondii HOM05D005707 ORTHO05D007276 0.0e+00 1580.5 936 83.0
MELO3C025972.2 Cucumis melo HOM05D005707 ORTHO05D007276 0.0e+00 1579.7 941 83.1
CsaV3_6G009510 Cucumis sativus L. HOM05D005707 ORTHO05D007276 0.0e+00 1579.7 940 83.0
Rhsim06G0174400 Rhododendron simsii HOM05D005707 ORTHO05D007276 0.0e+00 1579.3 944 83.5
Lj8A134G73 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1575.5 937 83.0
Phvul.010G042100 Phaseolus vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1569.3 944 82.6
Aqoxy2G03044 Aquilegia oxysepala HOM05D005707 ORTHO05D007276 0.0e+00 1568.5 940 81.3
Sed0013138 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1567.4 934 83.3
HanXRQChr03g0075251 Helianthus annuus HOM05D005707 ORTHO05D007276 0.0e+00 1563.5 930 83.0
Glyma.07G119500 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1562.7 948 82.1
VMungo0331G1616 Vigna mungo HOM05D005707 ORTHO05D007276 0.0e+00 1562.7 943 82.2
THA.LOC104808851 Tarenaya hassleriana HOM05D005707 ORTHO05D007276 0.0e+00 1561.6 940 82.0
Lj1g0027558 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1558.5 948 81.3
ECA240G2058 Erigeron canadensis HOM05D005707 ORTHO05D007276 0.0e+00 1557.7 930 82.8
arahy.Tifrunner.gnm1.ann1.T3MKLR Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1557.3 945 81.9
Ca_27368_v3 Cicer arietinum L. HOM05D005707 ORTHO05D007276 0.0e+00 1555.8 950 81.3
Lj6g0020016 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1555.8 951 81.2
PGSC0003DMG400026068 Solanum tuberosum HOM05D005707 ORTHO05D007276 0.0e+00 1555.8 935 81.6
Nitab4.5_0001082g0050 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1555.4 937 81.5
Glyma.03G104400 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1555.0 947 81.6
CAN.G308.64 Capsicum annuum HOM05D005707 ORTHO05D007276 0.0e+00 1553.9 937 81.4
Lsat_1_v5_gn_0_5460 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1553.1 930 82.7
Lsat_1_v5_gn_9_90020 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1542.3 940 81.7
Sopen06g023670 Solanum pennellii HOM05D005707 ORTHO05D007276 0.0e+00 1542.3 937 80.8
Nitab4.5_0000303g0290 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1539.2 937 81.1
Sed0020801 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1538.5 934 81.0
Solyc06g065170.4 Solanum lycopersicum HOM05D005707 ORTHO05D007276 0.0e+00 1538.5 937 80.4
Sp3g23690 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1538.1 939 80.7
SpUn0142_0010 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1538.1 939 80.7
PSO732G0538 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1536.9 942 79.7
arahy.Tifrunner.gnm1.ann1.DQM4AF Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1535.4 979 79.1
DCAR_012906 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1535.4 929 81.4
Lalb_Chr19g0124221 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1534.2 951 80.5
PSO675G5925 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1531.5 942 79.3
Thhalv10002393m.g Eutrema salsugineum HOM05D005707 ORTHO05D007276 0.0e+00 1530.8 939 80.2
Peaxi162Scf00268g00614 Petunia axillaris HOM05D005707 ORTHO05D007276 0.0e+00 1529.6 936 81.0
A07p06540 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1528.5 939 79.8
Medtr1g019500 Medicago truncatula HOM05D005707 ORTHO05D007276 0.0e+00 1527.7 951 79.9
TPR.G3804 Trifolium pratense HOM05D005707 ORTHO05D007276 0.0e+00 1527.3 948 80.1
Oeu040469.1 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1526.1 942 80.7
BraA07t28449Z Brassica rapa HOM05D005707 ORTHO05D007276 0.0e+00 1523.8 939 79.6
BcaC06g35905 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1522.7 939 79.4
BolC7t41423H Brassica oleracea HOM05D005707 ORTHO05D007276 0.0e+00 1522.7 939 79.4
Carub.0003s2668 Capsella rubella HOM05D005707 ORTHO05D007276 0.0e+00 1521.9 939 79.6
AL3G42770 Arabidopsis lyrata HOM05D005707 ORTHO05D007276 0.0e+00 1519.6 939 79.4
Cc07_g12010 Coffea canephora HOM05D005707 ORTHO05D007276 0.0e+00 1519.6 937 80.7
C07p09820 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1518.4 939 79.2
AUR62025658 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1518.1 940 79.9
AUR62001346 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1516.5 940 79.8
MSTRG.14925 Avicennia marina HOM05D005707 ORTHO05D007276 0.0e+00 1515.7 942 79.8
BcaB06g26833 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1513.8 934 79.7
EL10Ac7g18165 Beta vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1510.4 939 79.2
CARHR103040 Cardamine hirsuta HOM05D005707 ORTHO05D007276 0.0e+00 1508.0 939 79.0
AT2G05170 Arabidopsis thaliana HOM05D005707 ORTHO05D007276 0.0e+00 1507.3 939 79.0
Hund18608 Selenicereus undatus HOM05D005707 ORTHO05D007276 0.0e+00 1506.9 955 78.4
vmacro12103 Vaccinium macrocarpon HOM05D005707 ORTHO05D007276 0.0e+00 1503.0 944 80.1
Ah.15g094340 Amaranthus hybridus HOM05D005707 ORTHO05D007276 0.0e+00 1500.7 939 79.6
Aa31LG9G17700 Aethionema arabicum HOM05D005707 ORTHO05D007276 0.0e+00 1499.2 952 77.7
Migut.M00030 Erythranthe guttata HOM05D005707 ORTHO05D007276 0.0e+00 1493.0 942 79.6
COL.COLO4_09234 Corchorus olitorius HOM05D005707 ORTHO05D007276 0.0e+00 1482.6 949 80.1
ATR0626G192 Amborella trichopoda HOM05D005707 ORTHO05D007276 0.0e+00 1464.9 937 77.4
SGA_v2.0_scaffold73G24514 Striga asiatica HOM05D005707 ORTHO05D007276 0.0e+00 1441.0 932 77.1
Thecc.01G191800 Theobroma cacao HOM05D005707 ORTHO05D007276 0.0e+00 1440.2 832 86.4
Zm00001eb420950 Zea mays HOM05D005707 ORTHO05D007276 0.0e+00 1434.9 951 73.0
Os04g0382700 Oryza sativa ssp. japonica HOM05D005707 ORTHO05D007276 0.0e+00 1426.0 943 72.9
unitig_37.g12597 Utricularia gibba HOM05D005707 ORTHO05D007276 0.0e+00 1373.2 929 73.7
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1365.1 902 76.7
SEGI_38374 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 0.0e+00 1341.3 944 71.3
DCAR_028089 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1339.7 845 78.5
Psat6g013160 Pisum sativum HOM05D005707 ORTHO05D007276 0.0e+00 1331.6 845 79.1
Cpa.g.sc211.13 Carica papaya HOM05D005707 ORTHO05D007276 0.0e+00 1255.7 940 69.5
Lalb_Chr01g0023301 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1234.9 728 83.7
Mapoly0022s0120 Marchantia polymorpha HOM05D005707 ORTHO05D007276 0.0e+00 1185.2 978 60.3
Sc15g0001000 Simmondsia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1172.9 699 83.1
AagrBONN_evm.TU.Sc2ySwM_344.1573 Anthoceros agrestis HOM05D005707 ORTHO05D007276 0.0e+00 1169.5 954 60.7
Hma1.2p1_2056F.1_g312820 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1121.3 632 86.7
Hma1.2p1_1267F.1_g271470 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1114.8 630 86.5
Pp3c25_5560 Physcomitrium patens HOM05D005707 ORTHO05D007276 0.0e+00 1100.5 1006 55.4
SMO329G0026 Selaginella moellendorffii HOM05D005707 ORTHO05D007276 0.0e+00 1089.7 933 59.9
CDE12G0215 Ceratophyllum demersum HOM05D005707 ORTHO05D007276 2.8e-283 978.8 689 69.7
CBR_g20017 Chara braunii HOM05D005707 ORTHO05D007276 1.5e-223 780.4 743 53.4
Lsat_1_v5_gn_9_104540 Lactuca sativa HOM05D005707 ORTHO05D007276 6.2e-222 775.0 464 80.8
HPP92_028369 Vanilla planifolia HOM05D005707 ORTHO05D007276 4.4e-183 646.0 436 72.2
HPP92_028368 Vanilla planifolia HOM05D005707 ORTHO05D007276 1.3e-134 485.0 303 74.6
Cre02.g095074 Chlamydomonas reinhardtii HOM05D005707 ORTHO05D007276 8.1e-113 412.5 1306 24.9
PRCOL_00006472 Prasinoderma coloniale HOM05D005707 ORTHO05D007276 1.2e-108 398.7 616 39.3
Lalb_Chr01g0023291 Lupinus albus HOM05D005707 ORTHO05D007276 1.7e-81 308.5 197 75.1
Nn6g32392 Nelumbo nucifera HOM05D005707 ORTHO05D007276 1.7e-70 271.9 155 87.1
HPP92_014038 Vanilla planifolia HOM05D005707 ORTHO05D007276 1.5e-61 242.3 177 69.5
SEGI_06176 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 9.1e-56 223.0 300 45.3
Nn6g32391 Nelumbo nucifera HOM05D005707 ORTHO05D007276 9.8e-50 203.0 105 91.4
Peaxi162Scf00585g00082 Petunia axillaris HOM05D000636 ORTHO05D002338 3.6e-44 184.5 114 75.4
HPP92_014036 Vanilla planifolia HOM05D005707 ORTHO05D007276 7.0e-40 170.2 200 45.5
HPP92_014037 Vanilla planifolia HOM05D005707 ORTHO05D048631 6.6e-38 163.7 139 61.9
Nn2g13354 Nelumbo nucifera HOM05D005707 ORTHO05D007276 1.9e-29 135.6 64 95.3
VMungo0331G0660 Vigna mungo HOM05D000100 ORTHO05D000052 1.6e-15 89.4 80 62.5
Actinidia07884 Actinidia chinensis HOM05D005707 ORTHO05D057301 7.1e-08 63.9 100 46.0
MD09G1123100 Malus domestica HOM05D005707 ORTHO05D048631 1.2e-07 63.2 45 68.9


User provided reference genes

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