Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G01159 Aquilegia oxysepala HOM05D006688 ORTHO05D008550 4.7e-224 780.8 376 100.0
TAR636G2732 Trochodendron aralioides HOM05D006688 ORTHO05D008550 2.6e-174 615.5 374 76.5
Dinv42341 Davidia involucrata HOM05D006688 ORTHO05D008550 1.9e-164 582.8 372 74.7
PSO063G5109 Papaver somniferum HOM05D006688 ORTHO05D008550 6.1e-163 577.8 375 73.3
Thecc.09G085200 Theobroma cacao HOM05D006688 ORTHO05D008550 8.8e-162 573.9 367 74.1
PSO782G0729 Papaver somniferum HOM05D006688 ORTHO05D008550 3.4e-161 572.0 375 72.5
GSVIVG01015172001 Vitis vinifera HOM05D006688 ORTHO05D008550 1.8e-159 566.2 370 72.2
QL02p062093 Quercus lobata HOM05D006688 ORTHO05D008550 2.4e-159 565.8 396 70.5
Gohir.A06G073600 Gossypium hirsutum HOM05D006688 ORTHO05D008550 5.9e-158 561.2 367 72.2
Gorai.010G084500 Gossypium raimondii HOM05D006688 ORTHO05D008550 7.7e-158 560.8 367 72.5
CiPaw.03G212300 Carya illinoinensis HOM05D006688 ORTHO05D008550 1.3e-157 560.1 371 71.4
Gohir.D06G072500 Gossypium hirsutum HOM05D006688 ORTHO05D008550 2.9e-157 558.9 367 72.2
COL.COLO4_18173 Corchorus olitorius HOM05D006688 ORTHO05D008550 1.9e-156 556.2 367 71.7
Haze_25940 Corylus avellana HOM05D006688 ORTHO05D008550 2.1e-155 552.7 370 70.8
arahy.Tifrunner.gnm1.ann1.UP5FVB Arachis hypogaea HOM05D006688 ORTHO05D008550 4.7e-155 551.6 371 69.5
CSS0016517 Camellia sinensis var. sinensis HOM05D006688 ORTHO05D008550 8.0e-155 550.8 374 70.1
Hma1.2p1_0672F.1_g201000 Hydrangea macrophylla HOM05D006688 ORTHO05D008550 1.0e-154 550.4 375 71.5
MD02G1082800 Malus domestica HOM05D006688 ORTHO05D008550 6.8e-154 547.7 370 68.9
Lj7C679G14 Lonicera japonica HOM05D006688 ORTHO05D008550 2.6e-153 545.8 374 69.8
MBI04_g35655_MAGBIO Magnolia biondii HOM05D006688 ORTHO05D008550 4.4e-153 545.0 374 68.7
Manes.03G036200 Manihot esculenta HOM05D006688 ORTHO05D008550 4.4e-153 545.0 370 69.5
RcHm_v2.0_Chr2g0093801 Rosa chinensis HOM05D006688 ORTHO05D008550 5.7e-153 544.7 371 68.7
FvH4_1g07921 Fragaria vesca HOM05D006688 ORTHO05D008550 7.5e-153 544.3 372 68.5
FAN26G0248 Fragaria x ananassa HOM05D006688 ORTHO05D008550 1.3e-152 543.5 372 68.8
Atru.chr7.1629 Acer truncatum HOM05D006688 ORTHO05D008550 2.2e-152 542.7 371 69.0
arahy.Tifrunner.gnm1.ann1.LNAK8N Arachis hypogaea HOM05D006688 ORTHO05D008550 5.4e-151 538.1 363 70.0
arahy.Tifrunner.gnm1.ann1.XSA7KG Arachis hypogaea HOM05D006688 ORTHO05D008550 5.4e-151 538.1 375 68.0
FAN28G0979 Fragaria x ananassa HOM05D006688 ORTHO05D008550 5.4e-151 538.1 372 67.7
FAN19G1103 Fragaria x ananassa HOM05D006688 ORTHO05D008550 2.0e-150 536.2 368 68.5
Glyma.17G053100 Glycine max HOM05D006688 ORTHO05D008550 2.7e-150 535.8 374 66.6
CsaV3_1G040620 Cucumis sativus L. HOM05D006688 ORTHO05D008550 2.3e-149 532.7 370 68.4
MELO3C015492.2 Cucumis melo HOM05D006688 ORTHO05D008550 2.9e-149 532.3 373 68.1
Lj4g0022709 Lotus japonicus HOM05D006688 ORTHO05D008550 5.0e-149 531.6 370 68.1
Glyma.13G106300 Glycine max HOM05D006688 ORTHO05D008550 1.1e-148 530.4 374 65.2
Rhsim03G0231200 Rhododendron simsii HOM05D006688 ORTHO05D008550 7.2e-148 527.7 372 69.1
ECA232G4161 Erigeron canadensis HOM05D006688 ORTHO05D008550 1.0e-146 523.9 376 67.0
MBI04_g12191_MAGBIO Magnolia biondii HOM05D006688 ORTHO05D008550 1.4e-146 523.5 351 69.8
Duzib150G1545 Durio zibethinus HOM05D006688 ORTHO05D000625 4.0e-146 521.9 367 69.2
Phvul.003G134700 Phaseolus vulgaris HOM05D006688 ORTHO05D008550 5.2e-146 521.5 373 65.7
PGR004G0903 Punica granatum HOM05D006688 ORTHO05D008550 5.2e-146 521.5 373 66.0
TPR.G9451 Trifolium pratense HOM05D006688 ORTHO05D008550 8.9e-146 520.8 383 64.0
Potri.007G001500 Populus trichocarpa HOM05D006688 ORTHO05D008550 5.7e-145 518.1 371 66.0
VMungo1215G1360 Vigna mungo HOM05D006688 ORTHO05D008550 7.5e-145 517.7 373 65.4
Cfa003056 Carpinus fangiana HOM05D006688 ORTHO05D000625 1.8e-143 513.1 344 70.6
Cc06_g11640 Coffea canephora HOM05D006688 ORTHO05D008550 1.8e-143 513.1 374 65.2
Medtr4g125950 Medicago truncatula HOM05D006688 ORTHO05D008550 1.8e-143 513.1 370 64.3
Sopen07g019540 Solanum pennellii HOM05D006688 ORTHO05D008550 2.4e-143 512.7 373 65.7
Nitab4.5_0001519g0100 Nicotiana tabacum HOM05D006688 ORTHO05D008550 7.0e-143 511.1 373 66.0
Sc08g0008600 Simmondsia chinensis HOM05D006688 ORTHO05D008550 7.0e-143 511.1 373 66.2
Sed0022183 Sechium edule HOM05D006688 ORTHO05D008550 2.0e-142 509.6 373 64.9
vmacro06303 Vaccinium macrocarpon HOM05D006688 ORTHO05D008550 2.9e-141 505.8 372 66.7
MSTRG.10542 Avicennia marina HOM05D006688 ORTHO05D008550 4.0e-138 495.4 373 64.6
Nn8g38791 Nelumbo nucifera HOM05D006688 ORTHO05D008550 5.2e-138 495.0 383 64.0
Lalb_Chr20g0118781 Lupinus albus HOM05D006688 ORTHO05D008550 1.5e-137 493.4 370 61.9
EL10Ac8g19177 Beta vulgaris HOM05D006688 ORTHO05D008550 3.4e-137 492.3 376 64.6
Hund06662 Selenicereus undatus HOM05D006688 ORTHO05D008550 5.8e-137 491.5 376 62.5
Oeu000312.2 Olea europaea HOM05D006688 ORTHO05D008550 9.8e-137 490.7 411 60.3
AUR62029033 Chenopodium quinoa HOM05D006688 ORTHO05D008550 1.3e-136 490.3 375 64.3
Sabra07G0001100 Salix brachista HOM05D006688 ORTHO05D008550 2.4e-135 486.1 412 59.5
Nitab4.5_0003606g0020 Nicotiana tabacum HOM05D006688 ORTHO05D008550 4.1e-135 485.3 365 64.4
Ah.09g228060 Amaranthus hybridus HOM05D006688 ORTHO05D008550 1.2e-134 483.8 380 62.1
ClCG03G015420 Citrullus lanatus HOM05D006688 ORTHO05D008550 1.2e-134 483.8 350 66.0
Migut.L01521 Erythranthe guttata HOM05D006688 ORTHO05D008550 2.0e-134 483.0 373 63.0
unitig_578.g16412 Utricularia gibba HOM05D006688 ORTHO05D008550 2.3e-133 479.6 373 62.2
DCAR_010507 Daucus carota HOM05D006688 ORTHO05D008550 5.0e-133 478.4 371 62.5
Thhalv10022744m.g Eutrema salsugineum HOM05D006688 ORTHO05D008550 3.6e-131 472.2 368 61.1
Lsat_1_v5_gn_5_143161 Lactuca sativa HOM05D006688 ORTHO05D008550 4.7e-131 471.9 371 63.3
Prupe.7G205900 Prunus persica HOM05D006688 ORTHO05D008550 5.2e-130 468.4 292 71.9
Peaxi162Scf00494g00088 Petunia axillaris HOM05D006688 ORTHO05D008550 8.9e-130 467.6 373 61.7
Aa31LG8G16440 Aethionema arabicum HOM05D006688 ORTHO05D008550 3.4e-129 465.7 369 59.3
Ca_21292_v3 Cicer arietinum L. HOM05D006688 ORTHO05D008550 9.8e-129 464.2 378 59.5
TWI32G0460 Tripterygium wilfordii HOM05D006688 ORTHO05D008550 2.2e-128 463.0 378 60.1
AL3G48850 Arabidopsis lyrata HOM05D006688 ORTHO05D008550 1.9e-127 459.9 368 60.1
BraA07t27924Z Brassica rapa HOM05D006688 ORTHO05D008550 1.9e-127 459.9 367 60.5
BcaC06g36575 Brassica carinata HOM05D006688 ORTHO05D008550 2.4e-127 459.5 367 60.5
Carub.0003s3371 Capsella rubella HOM05D006688 ORTHO05D008550 3.2e-127 459.1 368 59.2
C07p02720 Brassica napus HOM05D006688 ORTHO05D008550 7.1e-127 458.0 367 60.2
BolC7t40672H Brassica oleracea HOM05D006688 ORTHO05D008550 9.2e-127 457.6 367 60.2
CARHR109870 Cardamine hirsuta HOM05D006688 ORTHO05D008550 9.2e-127 457.6 368 60.3
SalBow1G2294 Salvia bowleyana HOM05D006688 ORTHO05D008550 9.2e-127 457.6 404 57.7
SGA_v2.0_scaffold23G10037 Striga asiatica HOM05D006688 ORTHO05D008550 1.2e-126 457.2 408 57.8
A07p01330 Brassica napus HOM05D006688 ORTHO05D008550 4.6e-126 455.3 367 60.5
FAN23G3127 Fragaria x ananassa HOM05D006688 ORTHO05D008550 1.3e-125 453.8 372 60.2
FAN26G2887 Fragaria x ananassa HOM05D006688 ORTHO05D008550 1.3e-125 453.8 291 70.8
AT2G19430 Arabidopsis thaliana HOM05D006688 ORTHO05D008550 3.9e-125 452.2 368 58.2
BcaB03g16729 Brassica carinata HOM05D006688 ORTHO05D008550 6.6e-125 451.4 367 59.9
Eucgr.C03417 Eucalyptus grandis HOM05D006688 ORTHO05D008550 8.6e-125 451.1 374 59.9
CDE04G2495 Ceratophyllum demersum HOM05D006688 ORTHO05D008550 1.5e-124 450.3 344 62.2
THA.LOC104814631 Tarenaya hassleriana HOM05D006688 ORTHO05D008550 9.5e-124 447.6 373 58.4
HanXRQChr10g0319491 Helianthus annuus HOM05D006688 ORTHO05D008550 5.8e-121 438.3 385 59.5
Sp3g32810 Schrenkiella parvula HOM05D006688 ORTHO05D008550 4.1e-119 432.2 369 56.1
ATR0789G107 Amborella trichopoda HOM05D006688 ORTHO05D008550 1.7e-117 426.8 351 60.7
HPP92_007651 Vanilla planifolia HOM05D006688 ORTHO05D008550 8.9e-114 414.5 456 47.4
AUR62033933 Chenopodium quinoa HOM05D006688 ORTHO05D008550 1.5e-113 413.7 405 54.1
Psat7g043880 Pisum sativum HOM05D006688 ORTHO05D008550 2.9e-112 409.5 318 59.7
MD15G1210900 Malus domestica HOM05D006688 ORTHO05D008550 3.3e-108 396.0 392 52.6
Zm00001eb310980 Zea mays HOM05D006688 ORTHO05D008550 4.3e-108 395.6 373 51.7
Actinidia38457 Actinidia chinensis HOM05D006688 ORTHO05D008550 7.6e-105 384.8 372 55.1
Mapoly0100s0025 Marchantia polymorpha HOM05D006688 ORTHO05D008550 8.4e-88 328.2 374 46.0
Ciclev10009613m.g Citrus clementina HOM05D006688 ORTHO05D008550 2.5e-79 300.1 186 73.7
CANSAT56G4018 Cannabis sativa HOM05D006688 ORTHO05D008550 4.2e-79 299.3 217 63.1
Os09g0363600 Oryza sativa ssp. japonica HOM05D006688 ORTHO05D008550 8.5e-64 248.4 275 45.8
Lj7A540G53 Lonicera japonica HOM05D006688 ORTHO05D008550 3.2e-55 219.9 177 63.3
MCO14G146 Micromonas commoda HOM05D006688 ORTHO05D008550 3.2e-47 193.4 379 31.9
Cpa.g.sc28.142 Carica papaya HOM05D006688 ORTHO05D008550 4.2e-47 193.0 159 57.9
Cpa.g.sc28.145 Carica papaya HOM05D006688 ORTHO05D008550 5.2e-45 186.0 130 68.5
Ciclev10009794m.g Citrus clementina HOM05D006688 ORTHO05D008550 8.8e-45 185.3 151 58.9
SEGI_08677 Sequoiadendron giganteum HOM05D006688 ORTHO05D008550 1.2e-36 158.3 130 55.4
Solyc07g040780.4 Solanum lycopersicum HOM05D006688 ORTHO05D008550 3.4e-28 130.2 141 46.8
arahy.Tifrunner.gnm1.ann1.B17F7K Arachis hypogaea HOM05D006688 ORTHO05D008550 2.4e-26 124.0 68 79.4
arahy.Tifrunner.gnm1.ann1.LK4K8I Arachis hypogaea HOM05D006688 ORTHO05D008550 2.4e-26 124.0 82 70.7
Cre03.g180200 Chlamydomonas reinhardtii HOM05D006688 ORTHO05D008550 2.0e-25 120.9 422 26.3
Duzib168G0254 Durio zibethinus HOM05D006688 ORTHO05D008550 4.0e-21 106.7 64 78.1
Thhalv10023917m.g Eutrema salsugineum HOM05D006688 ORTHO05D008550 2.2e-19 100.9 117 47.9
SEGI_12408 Sequoiadendron giganteum HOM05D006688 ORTHO05D008550 4.6e-17 93.2 95 44.2
PRCOL_00004704 Prasinoderma coloniale HOM05D006688 ORTHO05D008550 3.7e-11 73.6 300 24.3
COL.COLO4_27080 Corchorus olitorius HOM05D006688 ORTHO05D008550 1.4e-10 71.6 67 56.7
Glyma.18G275100 Glycine max HOM05D002332 ORTHO05D002509 1.9e-07 61.2 219 23.7
Oeu044595.1 Olea europaea HOM05D000453 ORTHO05D000387 1.9e-07 61.2 139 32.4
CBR_g11128 Chara braunii HOM05D005544 ORTHO05D007303 2.5e-07 60.8 67 40.3
Oeu022256.1 Olea europaea HOM05D000836 ORTHO05D000709 3.3e-07 60.5 228 23.2
VMungo0720G2087 Vigna mungo HOM05D000836 ORTHO05D000709 5.6e-07 59.7 216 21.8
Ciclev10004358m.g Citrus clementina HOM05D000836 ORTHO05D000709 7.3e-07 59.3 121 26.4
BcaB04g17391 Brassica carinata HOM05D002288 ORTHO05D002894 9.5e-07 58.9 130 23.8
BcaB07g31609 Brassica carinata HOM05D006688 ORTHO05D008550 9.5e-07 58.9 121 33.9
FAN18G2555 Fragaria x ananassa HOM05D003769 ORTHO05D004521 1.2e-06 58.5 117 27.4
CDE08G0852 Ceratophyllum demersum HOM05D000464 ORTHO05D006292 2.8e-06 57.4 76 30.3
Lsat_1_v5_gn_6_115620 Lactuca sativa HOM05D002332 ORTHO05D002509 2.8e-06 57.4 92 31.5
unitig_8.g3057 Utricularia gibba HOM05D003769 ORTHO05D004521 2.8e-06 57.4 119 28.6
A06p04290 Brassica napus HOM05D002288 ORTHO05D002894 3.6e-06 57.0 116 23.3
BraA06t23633Z Brassica rapa HOM05D002288 ORTHO05D002894 3.6e-06 57.0 116 23.3
Glyma.08G252500 Glycine max HOM05D002332 ORTHO05D002509 3.6e-06 57.0 219 23.3
HPP92_028136 Vanilla planifolia HOM05D000836 ORTHO05D000709 3.6e-06 57.0 236 22.5
CARHR039080 Cardamine hirsuta HOM05D003769 ORTHO05D004521 4.7e-06 56.6 115 28.7
Solyc12g040510.2 Solanum lycopersicum HOM05D002288 ORTHO05D002894 4.7e-06 56.6 116 23.3
Sopen12g020110 Solanum pennellii HOM05D002288 ORTHO05D002894 4.7e-06 56.6 116 23.3
PGSC0003DMG400015829 Solanum tuberosum HOM05D002288 ORTHO05D002894 4.7e-06 56.6 116 23.3
vmacro19271 Vaccinium macrocarpon HOM05D000464 ORTHO05D006292 6.2e-06 56.2 126 24.6
vmacro23261 Vaccinium macrocarpon HOM05D000464 ORTHO05D006292 6.2e-06 56.2 126 24.6
A08p10840 Brassica napus HOM05D002288 ORTHO05D020205 8.1e-06 55.8 155 20.6
Os05g0552300 Oryza sativa ssp. japonica HOM05D002288 ORTHO05D002894 8.1e-06 55.8 107 24.3


User provided reference genes

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