Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy6G00493 Aquilegia oxysepala HOM05D004874 ORTHO05D006796 0.0e+00 2612.0 1288 100.0
PSO541G0735 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1914.8 1283 73.3
PSO675G8458 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1906.7 1281 73.5
Nn5g28922 Nelumbo nucifera HOM05D004874 ORTHO05D006796 0.0e+00 1881.7 1289 72.6
Dinv19497 Davidia involucrata HOM05D004874 ORTHO05D006796 0.0e+00 1858.6 1291 71.3
Thecc.01G111200 Theobroma cacao HOM05D004874 ORTHO05D006796 0.0e+00 1847.8 1287 70.4
Ciclev10024728m.g Citrus clementina HOM05D004874 ORTHO05D006796 0.0e+00 1839.3 1287 70.1
GSVIVG01022217001 Vitis vinifera HOM05D004874 ORTHO05D006796 0.0e+00 1835.5 1290 70.9
QL06p032401 Quercus lobata HOM05D004874 ORTHO05D006796 0.0e+00 1831.2 1284 69.9
Gorai.011G111800 Gossypium raimondii HOM05D004874 ORTHO05D006796 0.0e+00 1823.9 1283 69.4
Actinidia15577 Actinidia chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1817.7 1284 69.2
Gohir.A10G086600 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1814.7 1283 69.3
Gohir.D10G102100 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1813.9 1283 69.3
CSS0018271 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1811.6 1289 69.2
Prupe.6G174100 Prunus persica HOM05D004874 ORTHO05D006796 0.0e+00 1811.6 1287 69.7
Manes.13G077640 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1807.7 1284 68.6
CANSAT01G0647 Cannabis sativa HOM05D004874 ORTHO05D006796 0.0e+00 1806.2 1288 68.6
Potri.005G083800 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1804.6 1289 69.0
MD15G1333600 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1801.6 1289 69.1
Atru.chr4.387 Acer truncatum HOM05D004874 ORTHO05D006796 0.0e+00 1796.9 1285 69.3
Phvul.009G140100 Phaseolus vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1794.6 1283 67.7
Glyma.06G145900 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1791.9 1282 67.8
CSS0002284 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1787.7 1300 68.2
Glyma.04G220000 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1781.5 1282 67.3
RcHm_v2.0_Chr2g0116231 Rosa chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1780.0 1290 68.4
Sabra05G0068900 Salix brachista HOM05D004874 ORTHO05D006796 0.0e+00 1780.0 1296 68.2
TWI74G1507 Tripterygium wilfordii HOM05D004874 ORTHO05D006796 0.0e+00 1778.8 1291 67.5
Rhsim10G0151300 Rhododendron simsii HOM05D004874 ORTHO05D006796 0.0e+00 1778.1 1285 68.6
VMungo1309G2704 Vigna mungo HOM05D004874 ORTHO05D006796 0.0e+00 1774.2 1284 67.0
FvH4_1g22150 Fragaria vesca HOM05D004874 ORTHO05D006796 0.0e+00 1772.7 1286 68.0
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1770.7 1291 67.5
FAN23G3027 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1767.3 1286 67.7
FAN26G2351 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1758.4 1286 67.6
FAN19G0866 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1755.7 1308 66.8
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 0.0e+00 1754.2 1248 69.6
FAN28G2703 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1754.2 1286 67.3
Lj1g0000337 Lotus japonicus HOM05D004874 ORTHO05D006796 0.0e+00 1754.2 1291 66.6
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 0.0e+00 1746.9 1282 66.5
Medtr3g094770 Medicago truncatula HOM05D004874 ORTHO05D006796 0.0e+00 1738.8 1291 66.0
TPR.G23744 Trifolium pratense HOM05D004874 ORTHO05D006796 0.0e+00 1734.5 1291 65.7
Lalb_Chr11g0068041 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1726.1 1290 66.0
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 0.0e+00 1725.7 1283 65.5
Ca_16889_v3 Cicer arietinum L. HOM05D004874 ORTHO05D006796 0.0e+00 1724.9 1291 65.8
Psat5g065960 Pisum sativum HOM05D004874 ORTHO05D006796 0.0e+00 1718.0 1290 65.1
TAR628G0415 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1706.0 1196 71.7
arahy.Tifrunner.gnm1.ann1.ZQBN5H Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1700.3 1290 64.8
CAN.G1728.1 Capsicum annuum HOM05D004874 ORTHO05D006796 0.0e+00 1696.4 1289 65.5
arahy.Tifrunner.gnm1.ann1.M2IALY Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1693.3 1292 64.6
Sopen04g023580 Solanum pennellii HOM05D004874 ORTHO05D006796 0.0e+00 1689.9 1290 64.3
Manes.12G141800 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1687.9 1282 64.8
Cc07_g16070 Coffea canephora HOM05D004874 ORTHO05D006796 0.0e+00 1687.5 1287 64.6
EL10Ac6g14746 Beta vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1684.5 1366 61.2
Peaxi162Scf00323g00112 Petunia axillaris HOM05D004874 ORTHO05D006796 0.0e+00 1679.1 1257 66.0
Solyc04g054140.4 Solanum lycopersicum HOM05D004874 ORTHO05D006796 0.0e+00 1678.3 1295 64.0
THA.LOC104804146 Tarenaya hassleriana HOM05D004874 ORTHO05D006796 0.0e+00 1677.9 1286 65.0
ATR0564G436 Amborella trichopoda HOM05D004874 ORTHO05D006796 0.0e+00 1674.8 1283 64.7
Oeu028379.4 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1665.6 1388 59.9
Migut.H02425 Erythranthe guttata HOM05D004874 ORTHO05D006796 0.0e+00 1654.8 1291 64.0
ECA238G3208 Erigeron canadensis HOM05D004874 ORTHO05D006796 0.0e+00 1652.5 1289 63.1
HanXRQChr14g0446191 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1645.6 1288 62.8
Eucgr.H04838 Eucalyptus grandis HOM05D004874 ORTHO05D006796 0.0e+00 1641.7 1285 63.6
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 0.0e+00 1640.6 1286 63.2
CARHR113090 Cardamine hirsuta HOM05D004874 ORTHO05D006796 0.0e+00 1640.6 1291 63.3
Lsat_1_v5_gn_2_65401 Lactuca sativa HOM05D004874 ORTHO05D006796 0.0e+00 1638.2 1290 62.9
Sed0015455 Sechium edule HOM05D004874 ORTHO05D006796 0.0e+00 1632.1 1283 63.2
AT2G22010 Arabidopsis thaliana HOM05D004874 ORTHO05D006796 0.0e+00 1629.8 1291 62.8
AUR62003312 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1627.5 1288 62.3
BcaB08g35028 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1626.3 1289 63.0
HanXRQChr10g0295251 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1625.9 1286 62.3
AUR62016271 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1623.6 1288 62.2
AL4G11330 Arabidopsis lyrata HOM05D004874 ORTHO05D006796 0.0e+00 1619.8 1288 62.5
PGR102G1404 Punica granatum HOM05D004874 ORTHO05D006796 0.0e+00 1619.0 1282 62.8
C08p41080 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1617.8 1293 62.9
BcaC07g41106 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1615.1 1291 62.7
Hund19660 Selenicereus undatus HOM05D004874 ORTHO05D006796 0.0e+00 1613.6 1240 64.8
A09p57840 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1613.2 1291 63.1
BolC8t51674H Brassica oleracea HOM05D004874 ORTHO05D006796 0.0e+00 1611.3 1299 62.6
Sp4g01070 Schrenkiella parvula HOM05D004874 ORTHO05D006796 0.0e+00 1609.3 1286 62.9
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 0.0e+00 1603.2 1287 62.1
TAR376G0110 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1602.8 1048 74.7
Lalb_Chr13g0296191 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1599.3 1286 61.7
BraA09t41177Z Brassica rapa HOM05D004874 ORTHO05D006796 0.0e+00 1598.9 1297 62.6
SalBow6G4347 Salvia bowleyana HOM05D004874 ORTHO05D006796 0.0e+00 1583.9 1190 65.8
Thhalv10000015m.g Eutrema salsugineum HOM05D004874 ORTHO05D006796 0.0e+00 1581.6 1283 61.9
SGA_v2.0_scaffold2G01299 Striga asiatica HOM05D004874 ORTHO05D006796 0.0e+00 1574.3 1377 59.2
DCAR_014257 Daucus carota HOM05D004874 ORTHO05D006796 0.0e+00 1572.0 1291 60.9
CDE07G0820 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1528.5 1285 60.0
Zm00001eb328050 Zea mays HOM05D004874 ORTHO05D006796 0.0e+00 1523.8 1288 59.8
Aa31LG7G14640 Aethionema arabicum HOM05D004874 ORTHO05D006796 0.0e+00 1521.1 1290 60.9
SEGI_33214 Sequoiadendron giganteum HOM05D004874 ORTHO05D006796 0.0e+00 1447.6 1269 57.6
MD01G1017400 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1444.1 1042 69.6
Nitab4.5_0000156g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 0.0e+00 1444.1 1052 66.8
PGSC0003DMG400012951 Solanum tuberosum HOM05D004874 ORTHO05D006796 0.0e+00 1405.2 1054 65.1
CDE04G1796 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1380.2 1240 57.3
Duzib147G0760 Durio zibethinus HOM05D004874 ORTHO05D006796 0.0e+00 1345.1 1283 55.1
unitig_899.g14600 Utricularia gibba HOM05D004874 ORTHO05D006796 0.0e+00 1260.4 1165 55.2
COL.COLO4_11028 Corchorus olitorius HOM05D004874 ORTHO05D006796 0.0e+00 1252.3 1287 53.0
FAN01G2715 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1203.0 948 63.4
MBI02_g13022_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 0.0e+00 1183.7 839 69.0
Lj2C562G3 Lonicera japonica HOM05D004874 ORTHO05D006796 0.0e+00 1173.7 838 67.9
Ah.02g124400 Amaranthus hybridus HOM05D004874 ORTHO05D006796 0.0e+00 1171.8 883 63.9
Pp3c1_33900 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1155.2 1294 48.7
CiPaw.04G092800 Carya illinoinensis HOM05D004874 ORTHO05D006796 0.0e+00 1154.0 808 71.2
Pp3c2_2760 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1151.7 1322 47.5
Mapoly0047s0138 Marchantia polymorpha HOM05D004874 ORTHO05D006796 0.0e+00 1144.0 1319 47.5
SMO143G0116 Selaginella moellendorffii HOM05D004874 ORTHO05D006796 0.0e+00 1119.4 1207 49.9
FAN06G3019 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1115.5 949 60.5
Cpa.g.sc196.7 Carica papaya HOM05D004874 ORTHO05D006796 0.0e+00 1110.5 837 65.1
Pp3c17_14550 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1100.1 1305 47.3
vmacro12908 Vaccinium macrocarpon HOM05D004874 ORTHO05D006796 1.9e-309 1066.2 784 66.5
FAN06G4447 Fragaria x ananassa HOM05D004874 ORTHO05D006796 7.6e-306 1054.3 949 58.1
AagrBONN_evm.TU.Sc2ySwM_228.911 Anthoceros agrestis HOM05D004874 ORTHO05D006796 8.7e-302 1040.8 1144 49.9
Oeu030684.1 Olea europaea HOM05D004874 ORTHO05D006796 6.5e-297 1024.6 767 65.4
FAN10G0201 Fragaria x ananassa HOM05D004874 ORTHO05D006796 6.3e-284 981.5 692 68.5
MSTRG.2539 Avicennia marina HOM05D004874 ORTHO05D006796 1.7e-281 973.4 767 64.5
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 6.0e-234 815.5 1472 36.8
HPP92_016848 Vanilla planifolia HOM05D004874 ORTHO05D006796 5.0e-233 812.4 628 65.4
FvH4_7g04730 Fragaria vesca HOM05D004874 ORTHO05D006796 1.8e-214 750.7 553 65.6
HPP92_016847 Vanilla planifolia HOM05D004874 ORTHO05D006796 7.6e-213 745.3 622 59.6
FAN03G2613 Fragaria x ananassa HOM05D004874 ORTHO05D006796 3.0e-201 706.8 502 68.3
Oeu030685.1 Olea europaea HOM05D004874 ORTHO05D006796 2.0e-189 667.5 508 61.6
Lj2A562T49 Lonicera japonica HOM05D004874 ORTHO05D006796 2.6e-181 640.6 478 68.8
MBI02_g44126_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 4.0e-137 493.8 369 69.4
Cc07_g14920 Coffea canephora HOM05D004874 ORTHO05D006796 6.1e-130 469.9 397 61.5
Cpa.g.sc196.6 Carica papaya HOM05D004874 ORTHO05D006796 8.3e-127 459.5 327 69.4
Ah.02g124390 Amaranthus hybridus HOM05D004874 ORTHO05D006796 3.3e-115 421.0 368 60.6
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 4.4e-104 384.0 1420 26.6
Os07g0626900 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 6.7e-84 317.0 264 62.1
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 2.8e-82 311.6 1239 24.4
Nitab4.5_0010573g0010 Nicotiana tabacum HOM05D004874 ORTHO05D006796 5.5e-46 191.0 150 61.3
Sabra07G0068700 Salix brachista HOM05D004874 ORTHO05D006796 2.7e-45 188.7 247 47.0
FvH4_7g04731 Fragaria vesca HOM05D004874 ORTHO05D006796 2.2e-42 179.1 153 59.5
Solyc05g055570.3 Solanum lycopersicum HOM05D004874 ORTHO05D014502 4.0e-28 131.7 107 64.5
HanXRQChr11g0324541 Helianthus annuus HOM05D004874 ORTHO05D006796 5.5e-22 111.3 78 64.1
Zm00001eb137300 Zea mays HOM05D004874 ORTHO05D006796 5.4e-17 94.7 69 65.2
Nitab4.5_0000904g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 9.8e-11 73.9 46 73.9
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 3.7e-10 72.0 94 38.3
HanXRQChr11g0341101 Helianthus annuus HOM05D004874 ORTHO05D006796 1.4e-09 70.1 50 66.0
MCO11G679 Micromonas commoda HOM05D000032 ORTHO05D028824 2.4e-09 69.3 151 29.8
BcaC09g48952 Brassica carinata HOM05D004874 ORTHO05D014502 4.1e-09 68.6 57 63.2
BcaC06g36156 Brassica carinata HOM05D004874 ORTHO05D014502 9.2e-09 67.4 57 61.4
HanXRQChr12g0385291 Helianthus annuus HOM05D004874 ORTHO05D006796 1.6e-08 66.6 44 70.5
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 2.0e-08 66.2 217 29.0
C07p07140 Brassica napus HOM05D004874 ORTHO05D014502 3.5e-08 65.5 49 63.3
C01p44130 Brassica napus HOM05D004874 ORTHO05D014502 6.0e-08 64.7 49 63.3
BcaC04g21885 Brassica carinata HOM05D004874 ORTHO05D014502 7.8e-08 64.3 55 58.2
C09p26200 Brassica napus HOM05D004874 ORTHO05D014502 7.8e-08 64.3 49 63.3
BolC9t55523H Brassica oleracea HOM05D004874 ORTHO05D014502 7.8e-08 64.3 49 63.3
BolC7t41133H Brassica oleracea HOM05D004874 ORTHO05D014502 1.3e-07 63.5 49 61.2
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 1.7e-07 63.2 116 33.6
A01p36370 Brassica napus HOM05D004874 ORTHO05D014502 2.3e-07 62.8 46 65.2
A02p42430 Brassica napus HOM05D004874 ORTHO05D014502 2.3e-07 62.8 46 65.2
BraA01t04208Z Brassica rapa HOM05D004874 ORTHO05D014502 2.3e-07 62.8 46 65.2
BraA02t09174Z Brassica rapa HOM05D004874 ORTHO05D014502 2.3e-07 62.8 46 65.2
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 3.3e-06 58.9 196 29.1
Pp3c12_10080 Physcomitrium patens HOM05D004797 ORTHO05D005752 3.3e-06 58.9 203 27.1
Os03g0428000 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 4.3e-06 58.5 78 44.9
unitig_899.g14599 Utricularia gibba HOM05D002815 ORTHO05D025745 5.6e-06 58.2 74 41.9


User provided reference genes

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