Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G00475 Aquilegia oxysepala HOM05D007027 ORTHO05D008765 2.1e-211 738.8 383 100.0
Dinv07482 Davidia involucrata HOM05D007027 ORTHO05D008765 4.2e-143 511.9 328 77.1
Nn5g27423 Nelumbo nucifera HOM05D007027 ORTHO05D008765 4.6e-142 508.4 373 71.0
Manes.07G024000 Manihot esculenta HOM05D007027 ORTHO05D008765 2.5e-140 502.7 361 70.4
Duzib132G0056 Durio zibethinus HOM05D007027 ORTHO05D008765 2.2e-139 499.6 375 72.3
Gohir.D01G174800 Gossypium hirsutum HOM05D007027 ORTHO05D008765 4.8e-139 498.4 335 74.9
CiPaw.05G004800 Carya illinoinensis HOM05D007027 ORTHO05D008765 6.3e-139 498.0 372 70.4
Gorai.002G216900 Gossypium raimondii HOM05D007027 ORTHO05D008765 8.2e-139 497.7 357 72.0
CSS0028981 Camellia sinensis var. sinensis HOM05D007027 ORTHO05D008765 3.1e-138 495.7 330 75.2
CiPaw.06G173600 Carya illinoinensis HOM05D007027 ORTHO05D008765 9.0e-138 494.2 377 67.6
TAR381G1092 Trochodendron aralioides HOM05D007027 ORTHO05D008765 1.2e-137 493.8 383 67.9
QL02p100436 Quercus lobata HOM05D007027 ORTHO05D008765 3.4e-137 492.3 327 75.5
MD15G1435400 Malus domestica HOM05D007027 ORTHO05D008765 4.5e-137 491.9 364 69.5
GSVIVG01023249001 Vitis vinifera HOM05D007027 ORTHO05D008765 4.5e-137 491.9 383 66.3
Gohir.A01G183800 Gossypium hirsutum HOM05D007027 ORTHO05D008765 5.9e-137 491.5 357 71.4
MBI03_g18680_MAGBIO Magnolia biondii HOM05D007027 ORTHO05D008765 5.9e-137 491.5 379 67.8
THA.LOC104816809 Tarenaya hassleriana HOM05D007027 ORTHO05D008765 2.2e-136 489.6 333 71.8
Cfa004487 Carpinus fangiana HOM05D007027 ORTHO05D008765 8.5e-136 487.6 379 68.3
MD08G1241400 Malus domestica HOM05D007027 ORTHO05D008765 8.5e-136 487.6 368 67.7
FvH4_3g33250 Fragaria vesca HOM05D007027 ORTHO05D008765 1.1e-135 487.3 369 67.5
RcHm_v2.0_Chr5g0060601 Rosa chinensis HOM05D007027 ORTHO05D008765 1.4e-135 486.9 369 68.0
FAN16G3401 Fragaria x ananassa HOM05D007027 ORTHO05D008765 2.7e-134 482.6 330 72.1
FAN25G1584 Fragaria x ananassa HOM05D007027 ORTHO05D008765 3.6e-134 482.3 357 68.6
Cc02_g23170 Coffea canephora HOM05D007027 ORTHO05D008765 3.0e-133 479.2 331 73.7
Cpa.g.sc113.45 Carica papaya HOM05D007027 ORTHO05D008765 8.8e-133 477.6 335 72.2
Glyma.12G167000 Glycine max HOM05D007027 ORTHO05D008765 1.5e-132 476.9 361 68.7
Ca_00043_v3 Cicer arietinum L. HOM05D007027 ORTHO05D008765 2.8e-131 472.6 329 72.9
Thhalv10007981m.g Eutrema salsugineum HOM05D007027 ORTHO05D008765 6.3e-131 471.5 331 71.0
Glyma.16G003100 Glycine max HOM05D007027 ORTHO05D008765 1.1e-130 470.7 371 66.6
CARHR009790 Cardamine hirsuta HOM05D007027 ORTHO05D008765 1.8e-130 469.9 327 71.9
VMungo0540G1081 Vigna mungo HOM05D007027 ORTHO05D008765 2.4e-130 469.5 361 66.8
BcaC05g24848 Brassica carinata HOM05D007027 ORTHO05D008765 5.3e-130 468.4 332 71.1
FAN11G0675 Fragaria x ananassa HOM05D007027 ORTHO05D008765 5.3e-130 468.4 405 61.5
Rhsim11G0122600 Rhododendron simsii HOM05D007027 ORTHO05D008765 2.0e-129 466.5 354 67.5
HanXRQChr09g0249131 Helianthus annuus HOM05D007027 ORTHO05D008765 2.6e-129 466.1 330 72.1
CAN.G855.3 Capsicum annuum HOM05D007027 ORTHO05D008765 4.5e-129 465.3 329 70.2
CsaV3_5G029790 Cucumis sativus L. HOM05D007027 ORTHO05D008765 5.9e-129 464.9 368 65.2
Nitab4.5_0000787g0210 Nicotiana tabacum HOM05D007027 ORTHO05D008765 5.9e-129 464.9 328 70.7
AT1G09800 Arabidopsis thaliana HOM05D007027 ORTHO05D008765 7.7e-129 464.5 334 69.5
Atru.chr6.497 Acer truncatum HOM05D007027 ORTHO05D008765 1.3e-128 463.8 362 66.0
CANSAT54G3047 Cannabis sativa HOM05D007027 ORTHO05D008765 1.3e-128 463.8 330 70.3
Actinidia00176 Actinidia chinensis HOM05D007027 ORTHO05D008765 1.7e-128 463.4 317 72.6
Nitab4.5_0004106g0030 Nicotiana tabacum HOM05D007027 ORTHO05D008765 1.7e-128 463.4 328 70.7
Solyc01g103560.3 Solanum lycopersicum HOM05D007027 ORTHO05D008765 1.7e-128 463.4 361 65.7
PGSC0003DMG400024892 Solanum tuberosum HOM05D007027 ORTHO05D008765 2.9e-128 462.6 388 62.9
MELO3C011820.2 Cucumis melo HOM05D007027 ORTHO05D008765 3.8e-128 462.2 385 63.4
Medtr2g005830 Medicago truncatula HOM05D007027 ORTHO05D008765 3.8e-128 462.2 327 71.3
Psat1g222360 Pisum sativum HOM05D007027 ORTHO05D008765 6.5e-128 461.5 330 70.3
arahy.Tifrunner.gnm1.ann1.BAUB6M Arachis hypogaea HOM05D007027 ORTHO05D008765 2.5e-127 459.5 368 64.4
A09p65310 Brassica napus HOM05D007027 ORTHO05D008765 3.2e-127 459.1 329 69.6
Sopen01g045910 Solanum pennellii HOM05D007027 ORTHO05D008765 4.2e-127 458.8 361 65.1
arahy.Tifrunner.gnm1.ann1.3G44QY Arachis hypogaea HOM05D007027 ORTHO05D008765 5.5e-127 458.4 368 64.4
Carub.0001s0916 Capsella rubella HOM05D007027 ORTHO05D008765 7.2e-127 458.0 327 68.8
TPR.G2122 Trifolium pratense HOM05D007027 ORTHO05D008765 9.4e-127 457.6 332 69.3
SalBow7G1849 Salvia bowleyana HOM05D007027 ORTHO05D008765 1.2e-126 457.2 363 66.1
Sp1g08410 Schrenkiella parvula HOM05D007027 ORTHO05D008765 1.2e-126 457.2 326 70.2
Lalb_Chr20g0123691 Lupinus albus HOM05D007027 ORTHO05D008765 2.1e-126 456.4 325 71.1
DCAR_006671 Daucus carota HOM05D007027 ORTHO05D008765 3.6e-126 455.7 355 65.6
C08p49260 Brassica napus HOM05D007027 ORTHO05D008765 6.1e-126 454.9 329 68.7
Lj5C266T4 Lonicera japonica HOM05D007027 ORTHO05D008765 6.1e-126 454.9 362 65.7
Potri.003G008500 Populus trichocarpa HOM05D007027 ORTHO05D008765 6.1e-126 454.9 364 65.7
Migut.B00775 Erythranthe guttata HOM05D007027 ORTHO05D008765 7.9e-126 454.5 328 69.8
Thecc.02G018500 Theobroma cacao HOM05D007027 ORTHO05D008765 1.0e-125 454.1 374 67.6
BolC8t52461H Brassica oleracea HOM05D007027 ORTHO05D008765 1.4e-125 453.8 329 68.4
Oeu064602.3 Olea europaea HOM05D007027 ORTHO05D008765 5.1e-125 451.8 375 64.0
PGR142G1179 Punica granatum HOM05D007027 ORTHO05D008765 5.1e-125 451.8 368 64.7
Sabra03G0004200 Salix brachista HOM05D007027 ORTHO05D008765 1.5e-124 450.3 380 62.6
AL1G20380 Arabidopsis lyrata HOM05D007027 ORTHO05D008765 2.6e-124 449.5 364 64.0
PSO017G0894 Papaver somniferum HOM05D007027 ORTHO05D008765 2.6e-124 449.5 385 62.6
PSO170G1275 Papaver somniferum HOM05D007027 ORTHO05D008765 4.8e-123 445.3 382 62.3
Prupe.1G579000 Prunus persica HOM05D007027 ORTHO05D008765 6.3e-123 444.9 374 65.2
ATR1136G089 Amborella trichopoda HOM05D007027 ORTHO05D008765 1.4e-122 443.7 370 63.2
Ciclev10001491m.g Citrus clementina HOM05D007027 ORTHO05D008765 1.4e-122 443.7 330 70.3
Haze_10044 Corylus avellana HOM05D007027 ORTHO05D008765 1.4e-122 443.7 479 54.7
BraA06t23859Z Brassica rapa HOM05D007027 ORTHO05D008765 3.1e-122 442.6 319 68.3
TWI23G0132 Tripterygium wilfordii HOM05D007027 ORTHO05D008765 4.1e-122 442.2 335 68.7
ECA233G3768 Erigeron canadensis HOM05D007027 ORTHO05D008765 5.3e-122 441.8 355 65.1
COL.COLO4_17723 Corchorus olitorius HOM05D007027 ORTHO05D008765 2.6e-121 439.5 331 67.7
Os12g0194800 Oryza sativa ssp. japonica HOM05D007027 ORTHO05D008765 2.6e-121 439.5 330 68.2
A06p06480 Brassica napus HOM05D007027 ORTHO05D008765 3.5e-121 439.1 318 67.0
BolC5t29540H Brassica oleracea HOM05D007027 ORTHO05D008765 3.5e-121 439.1 323 67.2
SGA_v2.0_scaffold304G47919 Striga asiatica HOM05D007027 ORTHO05D008765 3.5e-121 439.1 340 66.5
C05p07890 Brassica napus HOM05D007027 ORTHO05D008765 6.5e-120 434.9 321 67.0
EL10Ac6g14111 Beta vulgaris HOM05D007027 ORTHO05D008765 1.5e-119 433.7 323 68.7
Zm00001eb138750 Zea mays HOM05D007027 ORTHO05D008765 1.5e-119 433.7 325 68.3
Lj6g0019688 Lotus japonicus HOM05D007027 ORTHO05D008765 9.4e-119 431.0 359 63.2
Lj6g0023928 Lotus japonicus HOM05D007027 ORTHO05D008765 9.4e-119 431.0 359 63.2
FAN21G1550 Fragaria x ananassa HOM05D007027 ORTHO05D008765 1.4e-117 427.2 369 61.8
Hund15459 Selenicereus undatus HOM05D007027 ORTHO05D008765 6.7e-117 424.9 351 62.7
unitig_699.g19848 Utricularia gibba HOM05D007027 ORTHO05D008765 1.3e-115 420.6 325 65.5
BcaC07g41859 Brassica carinata HOM05D007027 ORTHO05D008765 4.1e-114 415.6 331 63.4
vmacro01711 Vaccinium macrocarpon HOM05D007027 ORTHO05D008765 2.0e-113 413.3 374 59.9
Eucgr.I02764 Eucalyptus grandis HOM05D007027 ORTHO05D008765 4.0e-109 399.1 278 69.8
AUR62043952 Chenopodium quinoa HOM05D007027 ORTHO05D008765 1.7e-104 383.6 325 64.0
Pp3c1_13020 Physcomitrium patens HOM05D007027 ORTHO05D008765 5.0e-104 382.1 324 60.5
Sed0027668 Sechium edule HOM05D007027 ORTHO05D008765 2.0e-97 360.1 300 62.0
Phvul.006G218900 Phaseolus vulgaris HOM05D007027 ORTHO05D008765 2.3e-96 356.7 213 79.8
Mapoly0016s0042 Marchantia polymorpha HOM05D007027 ORTHO05D008765 6.6e-96 355.1 332 55.4
HPP92_013442 Vanilla planifolia HOM05D007027 ORTHO05D008765 4.9e-91 339.0 268 65.3
ClCG11G013270 Citrullus lanatus HOM05D007027 ORTHO05D008765 8.3e-91 338.2 368 52.2
SMO118G0354 Selaginella moellendorffii HOM05D007027 ORTHO05D008765 3.0e-88 329.7 323 52.6
Sc07g0005100 Simmondsia chinensis HOM05D007027 ORTHO05D008765 9.5e-87 324.7 276 62.7
HPP92_013441 Vanilla planifolia HOM05D007027 ORTHO05D008765 3.1e-77 293.1 182 77.5
CBR_g30061 Chara braunii HOM05D007027 ORTHO05D008765 8.9e-77 291.6 453 39.7
Aa31LG1G5150 Aethionema arabicum HOM05D007027 ORTHO05D008765 4.6e-73 279.3 201 66.2
CDE05G2927 Ceratophyllum demersum HOM05D007027 ORTHO05D008765 3.5e-65 253.1 190 69.5
AUR62028254 Chenopodium quinoa HOM05D007027 ORTHO05D008765 5.8e-60 235.7 199 62.8
Lsat_1_v5_gn_9_120240 Lactuca sativa HOM05D007027 ORTHO05D008765 1.2e-57 228.0 154 73.4
MCO02G420 Micromonas commoda HOM05D007027 ORTHO05D008765 8.1e-54 215.3 377 39.0
Peaxi162Scf00011g01224 Petunia axillaris HOM05D007027 ORTHO05D008765 6.2e-46 189.1 227 49.8
Migut.B00774 Erythranthe guttata HOM05D007027 ORTHO05D008765 1.1e-39 168.3 99 80.8
CDE05G0566 Ceratophyllum demersum HOM05D007027 ORTHO05D008765 4.9e-35 152.9 136 58.8
RcHm_v2.0_Chr3g0481081 Rosa chinensis HOM05D007027 ORTHO05D008765 3.9e-32 143.3 77 87.0
Pp3c21_5420 Physcomitrium patens HOM05D006708 ORTHO05D008321 6.5e-19 99.4 336 25.9
SMO361G0559 Selaginella moellendorffii HOM05D006708 ORTHO05D008321 7.2e-18 95.9 203 34.5
Mapoly0209s0002 Marchantia polymorpha HOM05D006708 ORTHO05D008321 9.4e-18 95.5 326 24.8
AagrBONN_evm.TU.Sc2ySwM_228.1603 Anthoceros agrestis HOM05D006708 ORTHO05D008321 1.5e-15 88.2 327 26.3
COL.COLO4_34511 Corchorus olitorius HOM05D006708 ORTHO05D008321 1.3e-14 85.1 328 25.9
SalBow2G2621 Salvia bowleyana HOM05D006708 ORTHO05D008321 1.7e-14 84.7 183 32.8
AL3G18120 Arabidopsis lyrata HOM05D006708 ORTHO05D008321 6.3e-14 82.8 331 26.6
Carub.0003s0647 Capsella rubella HOM05D006708 ORTHO05D008321 1.4e-13 81.6 332 25.9
FAN07G1828 Fragaria x ananassa HOM05D006708 ORTHO05D008321 1.4e-13 81.6 328 26.2
HanXRQChr10g0293331 Helianthus annuus HOM05D006708 ORTHO05D008321 1.4e-13 81.6 202 29.7
RcHm_v2.0_Chr4g0427681 Rosa chinensis HOM05D006708 ORTHO05D008321 1.4e-13 81.6 326 26.4
AT3G06950 Arabidopsis thaliana HOM05D006708 ORTHO05D008321 1.8e-13 81.3 203 29.1
FAN12G1816 Fragaria x ananassa HOM05D006708 ORTHO05D008321 1.8e-13 81.3 326 25.8
VMungo1215G1693 Vigna mungo HOM05D006708 ORTHO05D008321 2.4e-13 80.9 327 26.3
FvH4_4g21570 Fragaria vesca HOM05D006708 ORTHO05D008321 4.1e-13 80.1 328 25.9
Ca_21374_v3 Cicer arietinum L. HOM05D006708 ORTHO05D008321 5.3e-13 79.7 201 27.9
FAN17G2628 Fragaria x ananassa HOM05D006708 ORTHO05D008321 5.3e-13 79.7 328 25.9
Nitab4.5_0000745g0080 Nicotiana tabacum HOM05D006708 ORTHO05D008321 5.3e-13 79.7 196 31.6
Prupe.1G104700 Prunus persica HOM05D006708 ORTHO05D008321 5.3e-13 79.7 202 28.7
SEGI_30443 Sequoiadendron giganteum HOM05D007027 ORTHO05D008765 5.3e-13 79.7 52 69.2
Gohir.A02G058800 Gossypium hirsutum HOM05D006708 ORTHO05D008321 6.9e-13 79.3 328 24.1
Manes.03G212000 Manihot esculenta HOM05D006708 ORTHO05D008321 6.9e-13 79.3 201 28.9
Lj4g0015836 Lotus japonicus HOM05D006708 ORTHO05D008321 9.1e-13 79.0 203 29.1
Hund22645 Selenicereus undatus HOM05D006708 ORTHO05D008321 9.1e-13 79.0 337 25.2
Solyc05g053190.3 Solanum lycopersicum HOM05D006708 ORTHO05D008321 1.2e-12 78.6 196 31.6
Gorai.005G073000 Gossypium raimondii HOM05D006708 ORTHO05D008321 1.5e-12 78.2 328 24.1
Sopen05g031700 Solanum pennellii HOM05D006708 ORTHO05D008321 1.5e-12 78.2 196 31.6
Nn3g21927 Nelumbo nucifera HOM05D006708 ORTHO05D008321 2.6e-12 77.4 184 30.4
Potri.008G206200 Populus trichocarpa HOM05D006708 ORTHO05D008321 3.4e-12 77.0 201 27.9
Actinidia02537 Actinidia chinensis HOM05D006708 ORTHO05D008321 4.5e-12 76.6 199 28.1
AUR62002543 Chenopodium quinoa HOM05D006708 ORTHO05D008321 4.5e-12 76.6 205 29.8
Duzib151G0010 Durio zibethinus HOM05D006708 ORTHO05D008321 5.9e-12 76.3 327 25.1
QL06p014362 Quercus lobata HOM05D006708 ORTHO05D008321 5.9e-12 76.3 201 27.9
Sabra08G0153200 Salix brachista HOM05D006708 ORTHO05D008321 5.9e-12 76.3 201 27.4
HPP92_001944 Vanilla planifolia HOM05D006708 ORTHO05D008321 5.9e-12 76.3 226 27.9
CANSAT64G0974 Cannabis sativa HOM05D006708 ORTHO05D008321 7.7e-12 75.9 211 28.0
Dinv29501 Davidia involucrata HOM05D006708 ORTHO05D008321 1.0e-11 75.5 185 29.7
AUR62029962 Chenopodium quinoa HOM05D006708 ORTHO05D008321 1.3e-11 75.1 205 29.3
Ciclev10005313m.g Citrus clementina HOM05D006708 ORTHO05D008321 1.3e-11 75.1 201 27.9
Hma1.2p1_0013F.1_g007850 Hydrangea macrophylla HOM05D006708 ORTHO05D008321 1.3e-11 75.1 199 28.1
Thecc.04G313500 Theobroma cacao HOM05D006708 ORTHO05D008321 1.7e-11 74.7 201 27.9
TAR365G0272 Trochodendron aralioides HOM05D006708 ORTHO05D008321 1.7e-11 74.7 199 28.1
EL10Ac3g06239 Beta vulgaris HOM05D006708 ORTHO05D008321 2.2e-11 74.3 328 25.9
MD13G1140300 Malus domestica HOM05D006708 ORTHO05D008321 2.2e-11 74.3 201 26.9
Migut.A01089 Erythranthe guttata HOM05D006708 ORTHO05D008321 2.9e-11 73.9 197 28.4
arahy.Tifrunner.gnm1.ann1.H7T0W5 Arachis hypogaea HOM05D006708 ORTHO05D008321 3.8e-11 73.6 199 28.1
arahy.Tifrunner.gnm1.ann1.YU479Z Arachis hypogaea HOM05D006708 ORTHO05D008321 3.8e-11 73.6 199 28.1
CiPaw.01G128700 Carya illinoinensis HOM05D006708 ORTHO05D008321 3.8e-11 73.6 199 28.6
Haze_12609 Corylus avellana HOM05D006708 ORTHO05D008321 6.5e-11 72.8 201 27.9
Haze_12620 Corylus avellana HOM05D006708 ORTHO05D008321 6.5e-11 72.8 201 27.9
Glyma.17G041000 Glycine max HOM05D006708 ORTHO05D008321 1.1e-10 72.0 326 25.8
CBR_g55386 Chara braunii HOM05D006708 ORTHO05D008321 1.4e-10 71.6 184 32.1
Lalb_Chr18g0047341 Lupinus albus HOM05D006708 ORTHO05D008321 1.9e-10 71.2 204 28.4
Sed0006346 Sechium edule HOM05D006708 ORTHO05D008321 2.7e-09 67.4 279 25.4
TWI53G0094 Tripterygium wilfordii HOM05D006708 ORTHO05D008321 2.7e-09 67.4 201 28.9
Nitab4.5_0001769g0170 Nicotiana tabacum HOM05D006708 ORTHO05D008321 1.4e-08 65.1 172 29.7
MD16G1135500 Malus domestica HOM05D006708 ORTHO05D008321 8.8e-08 62.4 205 26.8
Zm00001eb018490 Zea mays HOM05D005655 ORTHO05D007386 7.4e-07 59.3 172 29.7
Os03g0338600 Oryza sativa ssp. japonica HOM05D006159 ORTHO05D007624 1.7e-06 58.2 364 23.6
SEGI_32206 Sequoiadendron giganteum HOM05D006708 ORTHO05D008321 2.8e-06 57.4 74 37.8
Cfa014219 Carpinus fangiana HOM05D006708 ORTHO05D008321 4.8e-06 56.6 223 26.5
Lsat_1_v5_gn_9_14440 Lactuca sativa HOM05D006159 ORTHO05D007624 8.2e-06 55.8 362 26.5


User provided reference genes

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