Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G01568 Aquilegia oxysepala HOM05D003093 ORTHO05D004301 9.2e-84 313.5 161 100.0
AUR62025537 Chenopodium quinoa HOM05D003093 ORTHO05D004301 3.0e-50 202.2 147 77.6
AUR62042671 Chenopodium quinoa HOM05D003093 ORTHO05D004301 3.0e-50 202.2 147 77.6
Ah.10g033320 Amaranthus hybridus HOM05D003093 ORTHO05D004301 5.1e-50 201.4 140 80.0
CiPaw.02G178700 Carya illinoinensis HOM05D003093 ORTHO05D004301 5.6e-49 198.0 138 79.7
Sed0009358 Sechium edule HOM05D003093 ORTHO05D004301 4.8e-48 194.9 138 77.5
TAR623G1133 Trochodendron aralioides HOM05D003093 ORTHO05D004301 4.8e-48 194.9 138 78.3
Aqoxy1G01978 Aquilegia oxysepala HOM05D003093 ORTHO05D004301 1.1e-47 193.7 138 79.7
Nn2g10548 Nelumbo nucifera HOM05D003093 ORTHO05D004301 1.1e-47 193.7 150 75.3
CsaV3_5G006530 Cucumis sativus L. HOM05D003093 ORTHO05D004301 1.4e-47 193.4 140 77.9
MBI05_g32633_MAGBIO Magnolia biondii HOM05D003093 ORTHO05D004301 3.1e-47 192.2 140 74.3
EL10Ac2g03490 Beta vulgaris HOM05D003093 ORTHO05D004301 6.9e-47 191.0 138 78.3
AagrBONN_evm.TU.Sc2ySwM_117.140 Anthoceros agrestis HOM05D003093 ORTHO05D004301 1.2e-46 190.3 138 75.4
FAN03G1537 Fragaria x ananassa HOM05D003093 ORTHO05D004301 2.0e-46 189.5 162 69.1
ECA233G1939 Erigeron canadensis HOM05D003093 ORTHO05D004301 2.6e-46 189.1 138 74.6
Lalb_Chr02g0143891 Lupinus albus HOM05D003093 ORTHO05D004301 4.5e-46 188.3 138 74.6
SGA_v2.0_scaffold221G42698 Striga asiatica HOM05D003093 ORTHO05D004301 4.5e-46 188.3 141 72.3
Oeu039037.3 Olea europaea HOM05D003093 ORTHO05D004301 5.8e-46 188.0 138 73.9
Potri.010G213300 Populus trichocarpa HOM05D003093 ORTHO05D004301 9.9e-46 187.2 148 72.3
GSVIVG01032624001 Vitis vinifera HOM05D003093 ORTHO05D004301 9.9e-46 187.2 140 75.0
Duzib128G1511 Durio zibethinus HOM05D003093 ORTHO05D004301 1.3e-45 186.8 138 76.8
ECA234G2610 Erigeron canadensis HOM05D003093 ORTHO05D004301 1.3e-45 186.8 138 75.4
FvH4_7g20820 Fragaria vesca HOM05D003093 ORTHO05D004301 1.3e-45 186.8 162 68.5
FAN01G1115 Fragaria x ananassa HOM05D003093 ORTHO05D004301 1.3e-45 186.8 162 68.5
FAN06G1239 Fragaria x ananassa HOM05D003093 ORTHO05D004301 1.3e-45 186.8 162 68.5
FAN06G3924 Fragaria x ananassa HOM05D003093 ORTHO05D004301 1.3e-45 186.8 162 68.5
Gohir.D06G173600 Gossypium hirsutum HOM05D003093 ORTHO05D004301 1.3e-45 186.8 138 76.8
Gorai.010G203000 Gossypium raimondii HOM05D003093 ORTHO05D004301 1.3e-45 186.8 138 76.8
PSO541G5925 Papaver somniferum HOM05D003093 ORTHO05D004301 1.3e-45 186.8 140 75.0
SGA_v2.0_scaffold2G01039 Striga asiatica HOM05D003093 ORTHO05D004301 1.3e-45 186.8 141 73.0
BcaC05g26809 Brassica carinata HOM05D003093 ORTHO05D004301 1.7e-45 186.4 137 75.2
ATR0580G275 Amborella trichopoda HOM05D003093 ORTHO05D004301 2.9e-45 185.7 140 74.3
PGR142G0268 Punica granatum HOM05D003093 ORTHO05D004301 2.9e-45 185.7 149 72.5
Lj1A929G70 Lonicera japonica HOM05D003093 ORTHO05D004301 3.8e-45 185.3 138 77.5
PSO275G0001 Papaver somniferum HOM05D003093 ORTHO05D004301 3.8e-45 185.3 140 74.3
PSO675G6375 Papaver somniferum HOM05D003093 ORTHO05D004301 3.8e-45 185.3 140 74.3
Gohir.D10G218100 Gossypium hirsutum HOM05D003093 ORTHO05D004301 4.9e-45 184.9 138 76.1
Gorai.011G244700 Gossypium raimondii HOM05D003093 ORTHO05D004301 4.9e-45 184.9 138 76.1
Manes.10G038800 Manihot esculenta HOM05D003093 ORTHO05D004301 4.9e-45 184.9 149 71.8
Sabra10G0165100 Salix brachista HOM05D003093 ORTHO05D004301 4.9e-45 184.9 148 71.6
SalBow8G1202 Salvia bowleyana HOM05D003093 ORTHO05D004301 4.9e-45 184.9 140 74.3
Thecc.10G062100 Theobroma cacao HOM05D003093 ORTHO05D004301 4.9e-45 184.9 138 76.1
TAR320G0003 Trochodendron aralioides HOM05D003093 ORTHO05D004301 4.9e-45 184.9 138 76.1
Thhalv10006834m.g Eutrema salsugineum HOM05D003093 ORTHO05D004301 6.4e-45 184.5 160 66.9
Gohir.A06G177800 Gossypium hirsutum HOM05D003093 ORTHO05D004301 6.4e-45 184.5 138 76.1
Gohir.A10G209800 Gossypium hirsutum HOM05D003093 ORTHO05D004301 6.4e-45 184.5 138 75.4
CAN.G546.16 Capsicum annuum HOM05D003093 ORTHO05D004301 1.1e-44 183.7 142 73.2
Manes.07G106800 Manihot esculenta HOM05D003093 ORTHO05D004301 1.1e-44 183.7 138 76.1
Mapoly0014s0207 Marchantia polymorpha HOM05D003093 ORTHO05D004301 1.1e-44 183.7 138 72.5
BcaC05g26621 Brassica carinata HOM05D003093 ORTHO05D004301 1.4e-44 183.3 137 74.5
A09p38030 Brassica napus HOM05D003093 ORTHO05D004301 1.4e-44 183.3 137 74.5
C05p26730 Brassica napus HOM05D003093 ORTHO05D004301 1.4e-44 183.3 137 74.5
BolC5t31397H Brassica oleracea HOM05D003093 ORTHO05D004301 1.4e-44 183.3 137 74.5
BraA09t39313Z Brassica rapa HOM05D003093 ORTHO05D004301 1.4e-44 183.3 137 74.5
RcHm_v2.0_Chr1g0365041 Rosa chinensis HOM05D003093 ORTHO05D004301 1.4e-44 183.3 164 66.5
CDE10G0582 Ceratophyllum demersum HOM05D003093 ORTHO05D004301 1.9e-44 183.0 157 68.2
ClCG02G013660 Citrullus lanatus HOM05D003093 ORTHO05D004301 1.9e-44 183.0 140 75.0
MELO3C023809.2 Cucumis melo HOM05D003093 ORTHO05D004301 1.9e-44 183.0 140 75.0
Sed0012201 Sechium edule HOM05D003093 ORTHO05D004301 1.9e-44 183.0 152 70.4
Aa31sc146G40 Aethionema arabicum HOM05D003093 ORTHO05D004301 2.4e-44 182.6 137 74.5
Carub.0001s2649 Capsella rubella HOM05D003093 ORTHO05D004301 2.4e-44 182.6 136 75.0
COL.COLO4_10868 Corchorus olitorius HOM05D003093 ORTHO05D004301 2.4e-44 182.6 138 75.4
Ciclev10030694m.g Citrus clementina HOM05D003093 ORTHO05D004301 3.2e-44 182.2 138 75.4
Phvul.007G008300 Phaseolus vulgaris HOM05D003093 ORTHO05D004301 3.2e-44 182.2 138 73.2
Sp1g24240 Schrenkiella parvula HOM05D003093 ORTHO05D004301 3.2e-44 182.2 137 74.5
FAN10G3079 Fragaria x ananassa HOM05D003093 ORTHO05D004301 5.5e-44 181.4 162 66.7
Cpa.g.sc1.306 Carica papaya HOM05D003093 ORTHO05D004301 7.1e-44 181.0 138 75.4
Duzib114G0430 Durio zibethinus HOM05D003093 ORTHO05D004301 7.1e-44 181.0 138 74.6
Duzib114G0987 Durio zibethinus HOM05D003093 ORTHO05D004301 7.1e-44 181.0 138 74.6
Prupe.2G224900 Prunus persica HOM05D003093 ORTHO05D004301 7.1e-44 181.0 138 74.6
BcaC01g00003 Brassica carinata HOM05D003093 ORTHO05D004301 1.2e-43 180.3 138 72.5
A08p25940 Brassica napus HOM05D003093 ORTHO05D004301 1.2e-43 180.3 138 72.5
BraA08t34545Z Brassica rapa HOM05D003093 ORTHO05D004301 1.2e-43 180.3 138 72.5
CiPaw.01G280100 Carya illinoinensis HOM05D003093 ORTHO05D004301 1.2e-43 180.3 138 73.9
Hma1.2p1_0207F.1_g087910 Hydrangea macrophylla HOM05D003093 ORTHO05D004301 1.2e-43 180.3 140 72.9
Dinv31391 Davidia involucrata HOM05D003093 ORTHO05D004301 1.6e-43 179.9 140 72.9
HanXRQChr15g0482981 Helianthus annuus HOM05D003093 ORTHO05D004301 1.6e-43 179.9 138 71.7
Lsat_1_v5_gn_3_65860 Lactuca sativa HOM05D003093 ORTHO05D004301 1.6e-43 179.9 138 73.2
MD07G1185000 Malus domestica HOM05D003093 ORTHO05D004301 1.6e-43 179.9 138 73.2
QL08p057653 Quercus lobata HOM05D003093 ORTHO05D004301 1.6e-43 179.9 159 67.3
MD01G1117500 Malus domestica HOM05D003093 ORTHO05D004301 2.7e-43 179.1 138 73.2
Potri.008G048000 Populus trichocarpa HOM05D003093 ORTHO05D004301 2.7e-43 179.1 140 71.4
C03p74710 Brassica napus HOM05D003093 ORTHO05D004301 3.5e-43 178.7 138 71.7
CANSAT78G1625 Cannabis sativa HOM05D003093 ORTHO05D004301 3.5e-43 178.7 138 73.9
CARHR027510 Cardamine hirsuta HOM05D003093 ORTHO05D004301 3.5e-43 178.7 137 74.5
Haze_16975 Corylus avellana HOM05D003093 ORTHO05D004301 3.5e-43 178.7 138 73.2
Eucgr.G02772 Eucalyptus grandis HOM05D003093 ORTHO05D004301 3.5e-43 178.7 140 72.1
PGSC0003DMG400002376 Solanum tuberosum HOM05D003093 ORTHO05D004301 3.5e-43 178.7 162 64.8
Cfa001556 Carpinus fangiana HOM05D003093 ORTHO05D004301 4.6e-43 178.3 139 71.9
SEGI_10080 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 4.6e-43 178.3 138 73.9
THA.LOC104827309 Tarenaya hassleriana HOM05D003093 ORTHO05D004301 4.6e-43 178.3 149 68.5
TWI38G0009 Tripterygium wilfordii HOM05D003093 ORTHO05D004301 4.6e-43 178.3 138 73.2
Cc02_g08600 Coffea canephora HOM05D003093 ORTHO05D004301 6.0e-43 177.9 137 73.0
SEGI_11595 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 6.0e-43 177.9 138 74.6
SEGI_36215 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 6.0e-43 177.9 138 74.6
BolC3t19719H Brassica oleracea HOM05D003093 ORTHO05D004301 7.9e-43 177.6 138 71.7
Sc06g0001860 Simmondsia chinensis HOM05D003093 ORTHO05D004301 7.9e-43 177.6 138 73.2
TPR.G11535 Trifolium pratense HOM05D003093 ORTHO05D004301 7.9e-43 177.6 138 71.0
SalBow3G0936 Salvia bowleyana HOM05D003093 ORTHO05D004301 1.0e-42 177.2 162 65.4
AL1G41570 Arabidopsis lyrata HOM05D003093 ORTHO05D004301 1.8e-42 176.4 136 74.3
AT1G28060 Arabidopsis thaliana HOM05D003093 ORTHO05D004301 1.8e-42 176.4 136 74.3
HanXRQChr16g0532861 Helianthus annuus HOM05D003093 ORTHO05D004301 1.8e-42 176.4 138 71.0
Solyc06g036580.4 Solanum lycopersicum HOM05D003093 ORTHO05D004301 1.8e-42 176.4 139 71.9
Sopen06g008290 Solanum pennellii HOM05D003093 ORTHO05D004301 1.8e-42 176.4 139 71.9
HPP92_019592 Vanilla planifolia HOM05D003093 ORTHO05D004301 1.8e-42 176.4 138 72.5
Rhsim03G0125400 Rhododendron simsii HOM05D003093 ORTHO05D004301 2.3e-42 176.0 137 73.0
Lj5g0014436 Lotus japonicus HOM05D003093 ORTHO05D004301 3.0e-42 175.6 138 72.5
Glyma.20G241900 Glycine max HOM05D003093 ORTHO05D004301 3.9e-42 175.3 138 72.5
Sabra08G0034200 Salix brachista HOM05D003093 ORTHO05D004301 3.9e-42 175.3 137 72.3
VMungo0720G2126 Vigna mungo HOM05D003093 ORTHO05D004301 3.9e-42 175.3 139 70.5
Lalb_Chr21g0307191 Lupinus albus HOM05D003093 ORTHO05D004301 6.7e-42 174.5 140 70.0
VMungo0720G2412 Vigna mungo HOM05D003093 ORTHO05D004301 6.7e-42 174.5 136 72.1
CAN.G348.4 Capsicum annuum HOM05D003093 ORTHO05D004301 8.7e-42 174.1 142 68.3
Glyma.11G012500 Glycine max HOM05D003093 ORTHO05D004301 8.7e-42 174.1 138 71.0
Glyma.01G229700 Glycine max HOM05D003093 ORTHO05D004301 1.1e-41 173.7 138 71.7
Psat6g240760 Pisum sativum HOM05D003093 ORTHO05D004301 1.1e-41 173.7 138 71.0
Hund22428 Selenicereus undatus HOM05D003093 ORTHO05D004301 1.1e-41 173.7 138 71.0
Ca_11321_v3 Cicer arietinum L. HOM05D003093 ORTHO05D004301 1.5e-41 173.3 138 71.0
Phvul.002G037600 Phaseolus vulgaris HOM05D003093 ORTHO05D004301 1.5e-41 173.3 138 70.3
Zm00001eb204030 Zea mays HOM05D003093 ORTHO05D004301 1.5e-41 173.3 141 70.9
TPR.G27039 Trifolium pratense HOM05D003093 ORTHO05D004301 1.9e-41 172.9 138 70.3
Zm00001eb238080 Zea mays HOM05D003093 ORTHO05D004301 1.9e-41 172.9 141 70.9
Os09g0249600 Oryza sativa ssp. japonica HOM05D003093 ORTHO05D004301 2.5e-41 172.6 138 71.0
Peaxi162Scf00015g02612 Petunia axillaris HOM05D003093 ORTHO05D004301 2.5e-41 172.6 139 71.2
TPR.G27107 Trifolium pratense HOM05D003093 ORTHO05D004301 2.5e-41 172.6 156 64.7
arahy.Tifrunner.gnm1.ann1.YKFK84 Arachis hypogaea HOM05D003093 ORTHO05D004301 3.3e-41 172.2 138 71.7
arahy.Tifrunner.gnm1.ann1.59ZZV8 Arachis hypogaea HOM05D003093 ORTHO05D004301 5.6e-41 171.4 138 71.7
SHI28152 Sapria himalayana HOM05D003093 ORTHO05D000168 5.6e-41 171.4 138 72.5
unitig_32.g10676 Utricularia gibba HOM05D003093 ORTHO05D004301 9.6e-41 170.6 138 69.6
Migut.F00813 Erythranthe guttata HOM05D003093 ORTHO05D004301 1.3e-40 170.2 138 68.8
CDE10G0729 Ceratophyllum demersum HOM05D003093 ORTHO05D004301 2.1e-40 169.5 139 70.5
TPR.G10418 Trifolium pratense HOM05D003093 ORTHO05D004301 2.8e-40 169.1 138 69.6
Medtr1g115920 Medicago truncatula HOM05D003093 ORTHO05D004301 1.1e-39 167.2 138 68.1
Lsat_1_v5_gn_6_55440 Lactuca sativa HOM05D003093 ORTHO05D004301 1.4e-39 166.8 119 75.6
CBR_g41418 Chara braunii HOM05D003093 ORTHO05D004301 1.8e-39 166.4 137 65.7
Pp3c14_26820 Physcomitrium patens HOM05D003093 ORTHO05D004301 2.4e-39 166.0 138 67.4
AT3G55930 Arabidopsis thaliana HOM05D003093 ORTHO05D004301 1.7e-37 159.8 135 68.1
Carub.0005s2292 Capsella rubella HOM05D003093 ORTHO05D004301 1.7e-37 159.8 133 71.4
Actinidia02998 Actinidia chinensis HOM05D003093 ORTHO05D004301 1.9e-36 156.4 140 64.3
Actinidia38222 Actinidia chinensis HOM05D003093 ORTHO05D004301 1.9e-36 156.4 140 65.0
Nitab4.5_0022203g0010 Nicotiana tabacum HOM05D003093 ORTHO05D004301 2.1e-35 152.9 132 68.2
CSS0040311 Camellia sinensis var. sinensis HOM05D003093 ORTHO05D004301 6.0e-35 151.4 139 64.0
CSS0050146 Camellia sinensis var. sinensis HOM05D003093 ORTHO05D004301 6.0e-35 151.4 139 64.0
TPR.G4996 Trifolium pratense HOM05D003093 ORTHO05D004301 1.0e-34 150.6 130 64.6
Solyc05g054880.3 Solanum lycopersicum HOM05D003093 ORTHO05D004301 2.5e-33 146.0 146 59.6
Sopen05g033340 Solanum pennellii HOM05D003093 ORTHO05D004301 3.3e-33 145.6 146 59.6
PGSC0003DMG400023507 Solanum tuberosum HOM05D003093 ORTHO05D004301 3.3e-33 145.6 139 60.4
Cre09.g416000 Chlamydomonas reinhardtii HOM05D003093 ORTHO05D004301 5.3e-31 138.3 134 56.0
SMO340G0141 Selaginella moellendorffii HOM05D003093 ORTHO05D004301 4.5e-30 135.2 138 55.1
Medtr5g039050 Medicago truncatula HOM05D003093 ORTHO05D004301 3.8e-29 132.1 134 59.7
Atru.chr12.590 Acer truncatum HOM05D003093 ORTHO05D004301 6.5e-29 131.3 89 82.0
A09p69230 Brassica napus HOM05D003093 ORTHO05D015210 3.2e-28 129.0 110 67.3
CARHR159400 Cardamine hirsuta HOM05D005746 ORTHO05D007105 8.8e-26 120.9 96 71.9
unitig_88.g27763 Utricularia gibba HOM05D003093 ORTHO05D004301 7.4e-25 117.9 98 62.2
TPR.G30178 Trifolium pratense HOM05D003093 ORTHO05D004301 2.2e-24 116.3 99 61.6
Rhsim09G0156000 Rhododendron simsii HOM05D003093 ORTHO05D004301 6.9e-23 111.3 138 52.2
A02p10760 Brassica napus HOM05D003093 ORTHO05D015210 1.1e-20 104.0 115 56.5
Oeu009485.1 Olea europaea HOM05D003093 ORTHO05D004301 1.4e-20 103.6 74 77.0
FAN01G1069 Fragaria x ananassa HOM05D003093 ORTHO05D004301 2.5e-20 102.8 74 79.7
FAN01G1323 Fragaria x ananassa HOM05D003093 ORTHO05D004301 2.5e-20 102.8 74 79.7
QL02p099154 Quercus lobata HOM05D003275 ORTHO05D003732 5.5e-20 101.7 110 58.2
AL5G37210 Arabidopsis lyrata HOM05D003093 ORTHO05D004301 2.7e-19 99.4 137 48.2
BNapus_Darmor_BZH_scaffold_38p00130 Brassica napus HOM05D003093 ORTHO05D015210 1.1e-17 94.0 116 52.6
PRCOL_00003477 Prasinoderma coloniale HOM05D003093 ORTHO05D004301 1.1e-15 87.4 145 40.0
A03p13900 Brassica napus HOM05D003093 ORTHO05D015210 2.4e-15 86.3 117 47.9
C03p14570 Brassica napus HOM05D003093 ORTHO05D015210 3.1e-15 85.9 108 50.0
C04p46620 Brassica napus HOM05D003093 ORTHO05D015210 3.1e-15 85.9 108 50.0
BraA06t25990Z Brassica rapa HOM05D003093 ORTHO05D015210 3.1e-15 85.9 108 50.0
A06p30680 Brassica napus HOM05D003093 ORTHO05D015210 4.1e-15 85.5 108 50.0
Medtr4g094355 Medicago truncatula HOM05D003093 ORTHO05D004301 4.5e-14 82.0 66 68.2
CAN.G28.18 Capsicum annuum HOM05D003093 ORTHO05D004301 3.8e-13 79.0 69 69.6
TPR.G27067 Trifolium pratense HOM05D003093 ORTHO05D004301 5.0e-13 78.6 98 54.1
Cfa024969 Carpinus fangiana HOM05D003093 ORTHO05D004301 1.9e-12 76.6 121 41.3
A06p30420 Brassica napus HOM05D003093 ORTHO05D015210 7.2e-12 74.7 51 80.4
A03p18450 Brassica napus HOM05D003093 ORTHO05D015210 1.6e-11 73.6 44 88.6
A06p30410 Brassica napus HOM05D003093 ORTHO05D015210 3.5e-06 55.8 35 74.3


User provided reference genes

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