Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy1G00185 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 0.0e+00 1326.2 677 100.0
TAR623G1126 Trochodendron aralioides HOM05D004763 ORTHO05D007492 0.0e+00 1162.9 673 86.8
GSVIVG01025336001 Vitis vinifera HOM05D004763 ORTHO05D007492 0.0e+00 1153.3 673 85.9
Nn7g36058 Nelumbo nucifera HOM05D004763 ORTHO05D007492 0.0e+00 1147.5 673 85.4
Sc09g0000480 Simmondsia chinensis HOM05D004763 ORTHO05D007492 0.0e+00 1139.8 674 84.4
CSS0044360 Camellia sinensis var. sinensis HOM05D004763 ORTHO05D007492 0.0e+00 1135.6 667 85.2
Dinv36304 Davidia involucrata HOM05D004763 ORTHO05D007492 0.0e+00 1135.2 672 84.2
QL01p006243 Quercus lobata HOM05D004763 ORTHO05D007492 0.0e+00 1135.2 675 84.4
Hund22081 Selenicereus undatus HOM05D004763 ORTHO05D007492 0.0e+00 1134.8 672 83.6
Hma1.2p1_1169F.1_g263300 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 0.0e+00 1132.5 673 84.8
MELO3C014639.2 Cucumis melo HOM05D004763 ORTHO05D007492 0.0e+00 1131.3 671 84.8
PSO339G3791 Papaver somniferum HOM05D004763 ORTHO05D007492 0.0e+00 1125.5 673 84.5
CsaV3_4G023800 Cucumis sativus L. HOM05D004763 ORTHO05D007492 0.0e+00 1124.0 671 84.2
Thecc.09G223100 Theobroma cacao HOM05D004763 ORTHO05D007492 0.0e+00 1124.0 667 84.3
Manes.14G014500 Manihot esculenta HOM05D004763 ORTHO05D007492 0.0e+00 1123.2 669 83.9
CiPaw.14G125100 Carya illinoinensis HOM05D004763 ORTHO05D007492 0.0e+00 1120.9 674 82.6
AUR62019250 Chenopodium quinoa HOM05D004763 ORTHO05D007492 0.0e+00 1115.9 672 82.0
Gorai.013G250000 Gossypium raimondii HOM05D004763 ORTHO05D007492 0.0e+00 1115.5 666 84.1
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 0.0e+00 1112.4 676 82.8
Sed0013957 Sechium edule HOM05D004763 ORTHO05D007492 0.0e+00 1112.1 671 83.2
Cc01_g04070 Coffea canephora HOM05D004763 ORTHO05D007492 0.0e+00 1111.3 673 82.9
Gohir.D13G219100 Gossypium hirsutum HOM05D004763 ORTHO05D007492 0.0e+00 1110.5 666 83.6
Potri.003G211000 Populus trichocarpa HOM05D004763 ORTHO05D007492 0.0e+00 1109.7 671 82.9
Gohir.A13G215400 Gossypium hirsutum HOM05D004763 ORTHO05D007492 0.0e+00 1108.6 666 83.5
HanXRQChr14g0451781 Helianthus annuus HOM05D004763 ORTHO05D007492 0.0e+00 1107.8 676 82.0
Lalb_Chr14g0372291 Lupinus albus HOM05D004763 ORTHO05D007492 0.0e+00 1107.8 674 83.1
Eucgr.B03662 Eucalyptus grandis HOM05D004763 ORTHO05D007492 0.0e+00 1105.9 674 81.6
Glyma.13G342900 Glycine max HOM05D004763 ORTHO05D007492 0.0e+00 1105.5 673 83.1
arahy.Tifrunner.gnm1.ann1.P0K6XU Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1104.4 669 83.7
EL10Ac4g10318 Beta vulgaris HOM05D004763 ORTHO05D007492 0.0e+00 1101.3 659 82.1
CANSAT54G1729 Cannabis sativa HOM05D004763 ORTHO05D007492 0.0e+00 1101.3 675 82.8
Psat5g288480 Pisum sativum HOM05D004763 ORTHO05D007492 0.0e+00 1100.9 669 81.9
arahy.Tifrunner.gnm1.ann1.VYK1P0 Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1100.1 669 83.4
TWI34G0672 Tripterygium wilfordii HOM05D004763 ORTHO05D007492 0.0e+00 1099.3 673 82.5
arahy.Tifrunner.gnm1.ann1.GN3GFY Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1098.2 669 83.3
Medtr2g098510 Medicago truncatula HOM05D004763 ORTHO05D007492 0.0e+00 1097.8 668 82.8
Peaxi162Scf00773g00119 Petunia axillaris HOM05D004763 ORTHO05D007492 0.0e+00 1097.0 680 81.2
Ciclev10014511m.g Citrus clementina HOM05D004763 ORTHO05D007492 0.0e+00 1095.9 662 82.9
Phvul.005G150500 Phaseolus vulgaris HOM05D004763 ORTHO05D007492 0.0e+00 1092.4 670 82.8
Prupe.6G018600 Prunus persica HOM05D004763 ORTHO05D007492 0.0e+00 1091.6 691 80.5
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 0.0e+00 1088.2 659 82.9
PGR102G0325 Punica granatum HOM05D004763 ORTHO05D007492 0.0e+00 1085.9 671 82.3
Lj3g0020649 Lotus japonicus HOM05D004763 ORTHO05D007492 0.0e+00 1085.1 673 81.9
Migut.D00558 Erythranthe guttata HOM05D004763 ORTHO05D007492 0.0e+00 1083.6 674 80.9
ECA238G4453 Erigeron canadensis HOM05D004763 ORTHO05D007492 0.0e+00 1082.4 676 80.9
MD03G1021100 Malus domestica HOM05D004763 ORTHO05D007492 0.0e+00 1081.2 678 80.2
Solyc01g014490.4 Solanum lycopersicum HOM05D004763 ORTHO05D007492 0.0e+00 1081.2 672 80.5
Sopen01g009200 Solanum pennellii HOM05D004763 ORTHO05D007492 0.0e+00 1080.5 672 80.4
THA.LOC104816912 Tarenaya hassleriana HOM05D004763 ORTHO05D007492 0.0e+00 1080.1 664 81.5
COL.COLO4_09893 Corchorus olitorius HOM05D004763 ORTHO05D007492 0.0e+00 1077.0 663 81.1
arahy.Tifrunner.gnm1.ann1.X75IXN Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1076.2 707 78.5
Cpa.g.sc84.111 Carica papaya HOM05D004763 ORTHO05D007492 0.0e+00 1075.5 699 78.1
RcHm_v2.0_Chr5g0078101 Rosa chinensis HOM05D004763 ORTHO05D007492 0.0e+00 1075.1 661 81.8
FvH4_3g43550 Fragaria vesca HOM05D004763 ORTHO05D007492 2.7e-310 1068.1 666 80.6
Sabra03G0153800 Salix brachista HOM05D004763 ORTHO05D007492 1.3e-309 1065.8 647 82.2
Sabra03G0156000 Salix brachista HOM05D004763 ORTHO05D007492 1.3e-309 1065.8 647 82.2
Nitab4.5_0006575g0020 Nicotiana tabacum HOM05D004763 ORTHO05D007492 5.6e-308 1060.4 689 79.0
Duzib150G1218 Durio zibethinus HOM05D004763 ORTHO05D007492 2.8e-307 1058.1 689 78.4
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 3.6e-307 1057.7 644 82.9
FAN16G3272 Fragaria x ananassa HOM05D004763 ORTHO05D007492 4.7e-307 1057.4 676 79.4
BcaC05g28282 Brassica carinata HOM05D004763 ORTHO05D007492 1.4e-306 1055.8 665 78.6
Rhsim01G0189300 Rhododendron simsii HOM05D004763 ORTHO05D007492 2.3e-306 1055.0 757 73.7
ATR0605G091 Amborella trichopoda HOM05D004763 ORTHO05D007492 3.1e-306 1054.7 671 78.8
HPP92_020536 Vanilla planifolia HOM05D004763 ORTHO05D007492 6.8e-306 1053.5 671 78.4
C05p43300 Brassica napus HOM05D004763 ORTHO05D007492 8.9e-306 1053.1 665 78.3
Aqoxy381s001 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 9.9e-305 1049.7 652 85.9
AL3G34700 Arabidopsis lyrata HOM05D004763 ORTHO05D007492 9.9e-305 1049.7 661 79.0
AT3G20780 Arabidopsis thaliana HOM05D004763 ORTHO05D007492 1.4e-303 1045.8 662 78.5
BcaB06g26148 Brassica carinata HOM05D004763 ORTHO05D007492 2.4e-303 1045.0 669 77.9
Carub.0003s2074 Capsella rubella HOM05D004763 ORTHO05D007492 4.1e-303 1044.3 661 78.7
Nitab4.5_0003069g0050 Nicotiana tabacum HOM05D004763 ORTHO05D007492 1.2e-302 1042.7 676 79.1
SGA_v2.0_scaffold1G00797 Striga asiatica HOM05D004763 ORTHO05D007492 2.1e-302 1042.0 725 75.3
Sp3g18800 Schrenkiella parvula HOM05D004763 ORTHO05D007492 1.0e-301 1039.6 665 77.6
A05p28000 Brassica napus HOM05D004763 ORTHO05D007492 2.3e-301 1038.5 679 76.9
CDE04G0998 Ceratophyllum demersum HOM05D004763 ORTHO05D007492 3.9e-301 1037.7 640 81.1
Thhalv10020214m.g Eutrema salsugineum HOM05D004763 ORTHO05D007492 1.9e-300 1035.4 665 77.3
Os09g0279600 Oryza sativa ssp. japonica HOM05D004763 ORTHO05D007492 5.6e-300 1033.9 645 78.6
BraA05t21683Z Brassica rapa HOM05D004763 ORTHO05D007492 2.1e-299 1031.9 687 76.0
BolC5t33062H Brassica oleracea HOM05D004763 ORTHO05D007492 2.0e-297 1025.4 696 74.4
Lsat_1_v5_gn_2_101121 Lactuca sativa HOM05D004763 ORTHO05D007492 3.1e-290 1001.5 696 75.0
Actinidia39377 Actinidia chinensis HOM05D004763 ORTHO05D007492 2.9e-288 995.0 674 76.6
Ah.04g161760 Amaranthus hybridus HOM05D004763 ORTHO05D007492 1.4e-282 976.1 672 74.7
Aa31LG8G7590 Aethionema arabicum HOM05D004763 ORTHO05D007492 3.1e-282 974.9 644 76.9
Atru.chr3.2503 Acer truncatum HOM05D004763 ORTHO05D007492 1.9e-276 955.7 581 81.8
Pp3c22_12720 Physcomitrium patens HOM05D004763 ORTHO05D007492 2.2e-272 942.2 658 71.6
AagrBONN_evm.TU.Sc2ySwM_344.3405 Anthoceros agrestis HOM05D004763 ORTHO05D007492 7.9e-270 933.7 647 71.4
Ca_01270_v3 Cicer arietinum L. HOM05D004763 ORTHO05D007492 1.3e-267 926.4 596 79.0
Mapoly0042s0060 Marchantia polymorpha HOM05D004763 ORTHO05D007492 3.4e-265 918.3 648 69.3
DCAR_024396 Daucus carota HOM05D004763 ORTHO05D007492 6.5e-264 914.1 673 71.5
SMO116G0144 Selaginella moellendorffii HOM05D004763 ORTHO05D007492 5.1e-261 904.4 648 69.8
CARHR096610 Cardamine hirsuta HOM05D004763 ORTHO05D007492 1.8e-258 896.0 590 75.4
Lj4g0010878 Lotus japonicus HOM05D004763 ORTHO05D007492 3.8e-256 888.3 673 70.1
Hma1.2p1_1169F.1_g263310 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 6.5e-256 887.5 509 85.9
CBR_g31022 Chara braunii HOM05D004763 ORTHO05D007492 9.4e-255 883.6 662 67.2
FAN21G2003 Fragaria x ananassa HOM05D004763 ORTHO05D007492 1.1e-250 870.2 639 71.8
FAN11G2145 Fragaria x ananassa HOM05D004763 ORTHO05D007492 6.7e-245 850.9 703 66.0
FAN11G0713 Fragaria x ananassa HOM05D004763 ORTHO05D007492 3.5e-241 838.6 703 64.7
Potri.T085401 Populus trichocarpa HOM05D004763 ORTHO05D007492 1.9e-231 806.2 445 89.2
Zm00001eb308780 Zea mays HOM05D004763 ORTHO05D007492 1.7e-216 756.5 462 79.4
Cre01.g019750 Chlamydomonas reinhardtii HOM05D004763 ORTHO05D007492 5.0e-200 701.8 685 53.7
Lsat_1_v5_gn_1_127001 Lactuca sativa HOM05D004763 ORTHO05D007492 6.4e-179 631.7 549 61.7
SEGI_32015 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 1.2e-177 627.5 382 79.3
ClCG02G023620 Citrullus lanatus HOM05D004763 ORTHO05D007492 1.0e-176 624.4 374 85.3
MCO09G243 Micromonas commoda HOM05D004763 ORTHO05D007492 3.3e-175 619.4 671 51.0
MBI01_g15753_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D007492 8.1e-174 614.8 365 85.8
CAN.G646.1 Capsicum annuum HOM05D004763 ORTHO05D007492 1.7e-171 607.1 366 82.8
PRCOL_00005940 Prasinoderma coloniale HOM05D004763 ORTHO05D007492 3.8e-171 605.9 674 50.0
PGSC0003DMG401029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 2.1e-169 600.1 387 79.3
Lj1A366T12 Lonicera japonica HOM05D004763 ORTHO05D007492 4.3e-143 512.7 367 73.8
Lju1319A4T15 Lonicera japonica HOM05D004763 ORTHO05D007492 4.8e-142 509.2 305 83.0
Lsat_1_v5_gn_1_127121 Lactuca sativa HOM05D004763 ORTHO05D007492 2.9e-139 500.0 642 48.9
CAN.G442.1 Capsicum annuum HOM05D004763 ORTHO05D007492 8.2e-134 481.9 306 78.1
PGSC0003DMG402029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 1.0e-131 474.9 305 77.7
Lj1C366G5 Lonicera japonica HOM05D004763 ORTHO05D007492 4.7e-113 412.9 297 72.4
Lsat_1_v5_gn_1_126981 Lactuca sativa HOM05D004763 ORTHO05D007492 4.4e-111 406.4 466 51.5
SEGI_39045 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 4.4e-79 300.1 215 68.4
Actinidia06319 Actinidia chinensis HOM05D004763 ORTHO05D007492 7.8e-76 289.3 215 69.8
Eucgr.B03660 Eucalyptus grandis HOM05D004763 ORTHO05D007492 1.1e-61 242.3 175 69.1
Lju1319C4G3 Lonicera japonica HOM05D004763 ORTHO05D014896 1.8e-56 224.9 234 57.3
Oeu036968.1 Olea europaea HOM05D004763 ORTHO05D007492 3.5e-52 210.7 104 90.4
TPR.G29742 Trifolium pratense HOM05D004763 ORTHO05D007492 1.0e-51 209.1 249 51.8
TPR.G29743 Trifolium pratense HOM05D004763 ORTHO05D007492 8.7e-51 206.1 213 56.8
Lsat_1_v5_gn_1_126941 Lactuca sativa HOM05D004763 ORTHO05D007492 1.6e-49 201.8 220 51.8
Lsat_1_v5_gn_1_127201 Lactuca sativa HOM05D004763 ORTHO05D007492 2.9e-38 164.5 414 32.9
Aa31LG8G7550 Aethionema arabicum HOM05D004763 ORTHO05D007492 6.1e-36 156.8 465 33.3
Lsat_1_v5_gn_1_127161 Lactuca sativa HOM05D004763 ORTHO05D007492 1.3e-35 155.6 160 56.9
Ca_01269_v3 Cicer arietinum L. HOM05D000073 ORTHO05D000033 1.6e-33 148.7 86 89.5
MBI09_g40619_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D019264 6.3e-33 146.7 87 80.5
MBI04_g09599_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 8.2e-33 146.4 87 80.5
MBI02_g24793_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 6.9e-32 143.3 87 79.3
Thecc.03G073800 Theobroma cacao HOM05D004763 ORTHO05D019264 1.2e-31 142.5 107 65.4
PGSC0003DMG400012096 Solanum tuberosum HOM05D004763 ORTHO05D014896 1.8e-27 128.6 86 75.6
PGSC0003DMG401017076 Solanum tuberosum HOM05D004763 ORTHO05D026177 2.4e-24 118.2 111 56.8
Lju1319A4T14 Lonicera japonica HOM05D004763 ORTHO05D019264 1.0e-19 102.8 54 92.6
arahy.Tifrunner.gnm1.ann1.50I1V9 Arachis hypogaea HOM05D004763 ORTHO05D014896 8.8e-19 99.8 68 77.9
Lsat_1_v5_gn_3_118680 Lactuca sativa HOM05D004763 ORTHO05D007492 1.1e-18 99.4 55 87.3
arahy.Tifrunner.gnm1.ann1.F7UR4V Arachis hypogaea HOM05D004763 ORTHO05D014896 2.0e-18 98.6 68 76.5
arahy.Tifrunner.gnm1.ann1.G1IAFF Arachis hypogaea HOM05D004763 ORTHO05D014896 5.7e-18 97.1 82 65.9
PGSC0003DMG400026817 Solanum tuberosum HOM05D004763 ORTHO05D026177 3.5e-15 87.8 82 62.2
TWI60G1170 Tripterygium wilfordii HOM05D004763 ORTHO05D014896 4.5e-15 87.4 49 89.8
arahy.Tifrunner.gnm1.ann1.65KXHR Arachis hypogaea HOM05D004763 ORTHO05D014896 7.7e-15 86.7 49 89.8
Sopen04g015550 Solanum pennellii HOM05D000004 ORTHO05D000002 5.0e-14 84.0 96 55.2
Lsat_1_v5_gn_1_125620 Lactuca sativa HOM05D004763 ORTHO05D007492 4.2e-13 80.9 201 33.3
Lsat_1_v5_gn_1_126960 Lactuca sativa HOM05D004763 ORTHO05D012314 7.2e-13 80.1 68 54.4
arahy.Tifrunner.gnm1.ann1.YT3XVJ Arachis hypogaea HOM05D012186 ORTHO05D009594 8.0e-12 76.6 98 48.0
Solyc11g028310.3 Solanum lycopersicum HOM05D004763 ORTHO05D026177 1.8e-11 75.5 63 66.7
PGSC0003DMG400019106 Solanum tuberosum HOM05D004763 ORTHO05D007492 1.7e-09 68.9 37 83.8
Solyc12g036030.1 Solanum lycopersicum HOM05D004763 ORTHO05D026177 1.6e-07 62.4 104 41.3
Solyc11g028340.3 Solanum lycopersicum HOM05D004763 ORTHO05D019264 2.0e-07 62.0 50 58.0
Aa31LG8G7540 Aethionema arabicum HOM05D004763 ORTHO05D007492 1.7e-06 58.9 67 46.3
arahy.Tifrunner.gnm1.ann1.NZV0HQ Arachis hypogaea HOM05D004763 ORTHO05D014896 3.8e-06 57.8 33 90.9
TPR.G29746 Trifolium pratense HOM05D004763 ORTHO05D412220 3.8e-06 57.8 36 75.0
Solyc11g028350.1 Solanum lycopersicum HOM05D004763 ORTHO05D019264 5.0e-06 57.4 40 65.0


User provided reference genes

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