Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.14g080800 Amaranthus hybridus HOM05D000572 ORTHO05D002399 1.2e-149 533.1 268 100.0
Ah.14g080810 Amaranthus hybridus HOM05D000572 ORTHO05D002399 6.2e-117 424.5 286 80.8
Ah.01g020670 Amaranthus hybridus HOM05D000572 ORTHO05D002399 6.5e-26 122.1 71 83.1
Hund15395 Selenicereus undatus HOM05D000572 ORTHO05D002399 4.5e-19 99.4 71 66.2
EL10Ac8g18295 Beta vulgaris HOM05D000572 ORTHO05D002399 7.7e-19 98.6 71 67.6
Dinv29674 Davidia involucrata HOM05D000572 ORTHO05D002399 7.7e-19 98.6 74 63.5
AUR62001559 Chenopodium quinoa HOM05D000572 ORTHO05D002399 1.3e-18 97.8 71 66.2
AUR62021310 Chenopodium quinoa HOM05D000572 ORTHO05D002399 1.3e-18 97.8 71 69.0
AUR62043444 Chenopodium quinoa HOM05D000572 ORTHO05D002399 1.3e-18 97.8 71 69.0
Dinv29626 Davidia involucrata HOM05D000572 ORTHO05D002399 8.6e-18 95.1 74 62.2
Ah.04g152120 Amaranthus hybridus HOM05D000572 ORTHO05D002399 1.1e-17 94.7 86 57.0
Lj2A766T19 Lonicera japonica HOM05D000572 ORTHO05D002399 3.6e-16 89.7 95 52.6
Sc02g0000170 Simmondsia chinensis HOM05D000572 ORTHO05D002399 3.6e-16 89.7 71 59.2
Actinidia19531 Actinidia chinensis HOM05D000572 ORTHO05D002399 6.1e-16 89.0 71 59.2
QL10p035076 Quercus lobata HOM05D000572 ORTHO05D002399 3.0e-15 86.7 71 57.7
Thecc.01G144800 Theobroma cacao HOM05D000572 ORTHO05D002399 5.2e-15 85.9 90 50.0
COL.COLO4_12145 Corchorus olitorius HOM05D000572 ORTHO05D002399 6.8e-15 85.5 74 55.4
CSS0016257 Camellia sinensis var. sinensis HOM05D000572 ORTHO05D002399 1.5e-14 84.3 71 57.7
CSS0042457 Camellia sinensis var. sinensis HOM05D000572 ORTHO05D002399 1.5e-14 84.3 71 57.7
vmacro01683 Vaccinium macrocarpon HOM05D000572 ORTHO05D002399 2.6e-14 83.6 71 57.7
CiPaw.12G053900 Carya illinoinensis HOM05D000572 ORTHO05D002399 4.4e-14 82.8 91 46.2
Ciclev10027585m.g Citrus clementina HOM05D000572 ORTHO05D002399 4.4e-14 82.8 87 47.1
HanXRQChr04g0120041 Helianthus annuus HOM05D000572 ORTHO05D002399 4.4e-14 82.8 74 50.0
TAR525G0001 Trochodendron aralioides HOM05D000572 ORTHO05D002399 5.7e-14 82.4 71 57.7
Dinv19128 Davidia involucrata HOM05D000572 ORTHO05D002399 9.8e-14 81.6 71 56.3
Gorai.012G048000 Gossypium raimondii HOM05D000572 ORTHO05D002399 1.3e-13 81.3 82 50.0
Gohir.A05G373000 Gossypium hirsutum HOM05D000572 ORTHO05D002399 1.7e-13 80.9 82 48.8
Gohir.D04G042500 Gossypium hirsutum HOM05D000572 ORTHO05D002399 1.7e-13 80.9 82 48.8
HanXRQChr11g0347301 Helianthus annuus HOM05D000572 ORTHO05D002399 2.8e-13 80.1 74 51.4
Prupe.7G183100 Prunus persica HOM05D000572 ORTHO05D002399 3.7e-13 79.7 71 50.7
DCAR_003283 Daucus carota HOM05D000572 ORTHO05D002399 4.9e-13 79.3 71 53.5
GSVIVG01000263001 Vitis vinifera HOM05D000572 ORTHO05D002399 4.9e-13 79.3 71 52.1
CSS0032893 Camellia sinensis var. sinensis HOM05D000572 ORTHO05D002399 6.3e-13 79.0 74 52.7
Rhsim11G0118300 Rhododendron simsii HOM05D000572 ORTHO05D002399 6.3e-13 79.0 71 53.5
TAR633G0967 Trochodendron aralioides HOM05D000572 ORTHO05D002399 8.3e-13 78.6 71 53.5
Atru.chr1.1803 Acer truncatum HOM05D000572 ORTHO05D002399 1.1e-12 78.2 71 56.3
Duzib147G0313 Durio zibethinus HOM05D000572 ORTHO05D002399 1.4e-12 77.8 82 46.3
Aqoxy7G03579 Aquilegia oxysepala HOM05D000572 ORTHO05D002399 1.8e-12 77.4 70 51.4
Duzib160G0412 Durio zibethinus HOM05D000572 ORTHO05D002399 1.8e-12 77.4 67 52.2
Lj5A282T76 Lonicera japonica HOM05D000572 ORTHO05D002399 2.4e-12 77.0 74 55.4
Solyc11g030600.3 Solanum lycopersicum HOM05D000572 ORTHO05D002399 2.4e-12 77.0 71 52.1
Sopen11g013460 Solanum pennellii HOM05D000572 ORTHO05D002399 2.4e-12 77.0 71 52.1
CANSAT01G1917 Cannabis sativa HOM05D000572 ORTHO05D002399 3.2e-12 76.6 71 47.9
Cc07_g19880 Coffea canephora HOM05D000572 ORTHO05D002399 3.2e-12 76.6 70 51.4
Nitab4.5_0004640g0010 Nicotiana tabacum HOM05D000572 ORTHO05D002399 3.2e-12 76.6 71 50.7
Potri.004G134000 Populus trichocarpa HOM05D000572 ORTHO05D002399 3.2e-12 76.6 70 51.4
Atru.chr12.1878 Acer truncatum HOM05D000572 ORTHO05D002399 4.1e-12 76.3 71 53.5
CAN.G1330.38 Capsicum annuum HOM05D000572 ORTHO05D002399 4.1e-12 76.3 71 50.7
Nitab4.5_0004345g0030 Nicotiana tabacum HOM05D000572 ORTHO05D002399 4.1e-12 76.3 71 52.1
Haze_19377 Corylus avellana HOM05D000572 ORTHO05D002399 5.4e-12 75.9 74 47.3
Sabra04G0084200 Salix brachista HOM05D000572 ORTHO05D002399 5.4e-12 75.9 70 50.0
Cpa.g.sc37.192 Carica papaya HOM05D000572 ORTHO05D002399 7.0e-12 75.5 67 52.2
Lsat_1_v5_gn_7_75121 Lactuca sativa HOM05D000572 ORTHO05D002399 7.0e-12 75.5 74 50.0
Manes.13G119400 Manihot esculenta HOM05D000572 ORTHO05D002399 7.0e-12 75.5 71 50.7
CAN.G868.5 Capsicum annuum HOM05D000572 ORTHO05D002399 9.2e-12 75.1 71 50.7
DCAR_019941 Daucus carota HOM05D000572 ORTHO05D002399 1.2e-11 74.7 70 54.3
Manes.13G155232 Manihot esculenta HOM05D000572 ORTHO05D002399 1.2e-11 74.7 71 49.3
MSTRG.27892 Avicennia marina HOM05D000572 ORTHO05D002399 1.6e-11 74.3 71 54.9
Eucgr.I00036 Eucalyptus grandis HOM05D000572 ORTHO05D002399 1.6e-11 74.3 87 46.0
PGSC0003DMG400030941 Solanum tuberosum HOM05D000572 ORTHO05D002399 1.6e-11 74.3 71 50.7
SGA_v2.0_scaffold8G04469 Striga asiatica HOM05D000572 ORTHO05D002399 1.6e-11 74.3 71 49.3
THA.LOC104823726 Tarenaya hassleriana HOM05D000572 ORTHO05D002399 1.6e-11 74.3 55 63.6
GSVIVG01000262001 Vitis vinifera HOM05D000572 ORTHO05D002399 1.6e-11 74.3 71 52.1
PGR119G1310 Punica granatum HOM05D000572 ORTHO05D002399 2.0e-11 73.9 72 50.0
RcHm_v2.0_Chr5g0051581 Rosa chinensis HOM05D000572 ORTHO05D002399 2.0e-11 73.9 71 49.3
Aqoxy1G02545 Aquilegia oxysepala HOM05D000572 ORTHO05D002399 2.7e-11 73.6 70 50.0
Aqoxy7G03575 Aquilegia oxysepala HOM05D000572 ORTHO05D002399 2.7e-11 73.6 70 48.6
AT5G49160 Arabidopsis thaliana HOM05D000572 ORTHO05D002399 2.7e-11 73.6 90 43.3
Carub.0008s0898 Capsella rubella HOM05D000572 ORTHO05D002399 2.7e-11 73.6 82 46.3
MD15G1231100 Malus domestica HOM05D000572 ORTHO05D002399 2.7e-11 73.6 70 52.9
CSS0034408 Camellia sinensis var. sinensis HOM05D000572 ORTHO05D002399 3.5e-11 73.2 67 52.2
MBI03_g20877_MAGBIO Magnolia biondii HOM05D000572 ORTHO05D002399 4.5e-11 72.8 65 50.8
PSO210G2968 Papaver somniferum HOM05D000572 ORTHO05D002399 4.5e-11 72.8 71 46.5
PSO447G0024 Papaver somniferum HOM05D000572 ORTHO05D002399 4.5e-11 72.8 71 46.5
TWI15G0599 Tripterygium wilfordii HOM05D000572 ORTHO05D002399 4.5e-11 72.8 74 48.6
Aa31LG11G8250 Aethionema arabicum HOM05D000572 ORTHO05D002399 5.9e-11 72.4 78 51.3
TPR.G37134 Trifolium pratense HOM05D000572 ORTHO05D002399 5.9e-11 72.4 67 47.8
Zm00001eb301620 Zea mays HOM05D000572 ORTHO05D002399 5.9e-11 72.4 88 43.2
THA.LOC104820805 Tarenaya hassleriana HOM05D000572 ORTHO05D002399 7.8e-11 72.0 72 51.4
arahy.Tifrunner.gnm1.ann1.5512QZ Arachis hypogaea HOM05D000572 ORTHO05D002399 1.0e-10 71.6 69 47.8
arahy.Tifrunner.gnm1.ann1.I0VWWF Arachis hypogaea HOM05D000572 ORTHO05D002399 1.0e-10 71.6 69 47.8
Os07g0182900 Oryza sativa ssp. japonica HOM05D000572 ORTHO05D002399 1.3e-10 71.2 70 48.6
Zm00001eb301630 Zea mays HOM05D000572 ORTHO05D002399 1.3e-10 71.2 70 48.6
AL8G22690 Arabidopsis lyrata HOM05D000572 ORTHO05D002399 1.7e-10 70.9 83 43.4
DCAR_009626 Daucus carota HOM05D000572 ORTHO05D002399 1.7e-10 70.9 70 48.6
FvH4_1g10300 Fragaria vesca HOM05D000572 ORTHO05D002399 1.7e-10 70.9 71 47.9
FAN19G1502 Fragaria x ananassa HOM05D000572 ORTHO05D002399 1.7e-10 70.9 71 47.9
FAN26G0750 Fragaria x ananassa HOM05D000572 ORTHO05D002399 1.7e-10 70.9 71 47.9
Oeu032220.1 Olea europaea HOM05D000572 ORTHO05D002399 1.7e-10 70.9 72 50.0
SHI05188 Sapria himalayana HOM05D000572 ORTHO05D002399 1.7e-10 70.9 72 45.8
SGA_v2.0_scaffold122G33283 Striga asiatica HOM05D000572 ORTHO05D002399 1.7e-10 70.9 55 65.5
TPR.G12077 Trifolium pratense HOM05D000572 ORTHO05D002399 1.7e-10 70.9 67 46.3
TAR628G1524 Trochodendron aralioides HOM05D000572 ORTHO05D002399 1.7e-10 70.9 71 54.9
unitig_26.g9010 Utricularia gibba HOM05D000572 ORTHO05D002399 1.7e-10 70.9 73 53.4
vmacro19834 Vaccinium macrocarpon HOM05D000572 ORTHO05D002399 1.7e-10 70.9 111 36.9
ClCG11G000400 Citrullus lanatus HOM05D000572 ORTHO05D002399 2.3e-10 70.5 71 50.7
MELO3C026448.2 Cucumis melo HOM05D000572 ORTHO05D002399 2.3e-10 70.5 91 46.2
Sed0009647 Sechium edule HOM05D000572 ORTHO05D002399 2.3e-10 70.5 71 52.1
CDE12G0633 Ceratophyllum demersum HOM05D000572 ORTHO05D002399 2.9e-10 70.1 75 50.7
SEGI_36703 Sequoiadendron giganteum HOM05D000572 ORTHO05D002399 2.9e-10 70.1 68 52.9
Medtr6g065580 Medicago truncatula HOM05D000572 ORTHO05D002399 3.9e-10 69.7 61 54.1
RcHm_v2.0_Chr2g0097141 Rosa chinensis HOM05D000572 ORTHO05D002399 3.9e-10 69.7 70 47.1
ECA236G0624 Erigeron canadensis HOM05D000572 ORTHO05D002399 5.0e-10 69.3 67 47.8
Glyma.06G178200 Glycine max HOM05D000572 ORTHO05D002399 5.0e-10 69.3 61 52.5
Lalb_Chr03g0033391 Lupinus albus HOM05D000572 ORTHO05D002399 5.0e-10 69.3 67 47.8
Medtr2g046020 Medicago truncatula HOM05D000572 ORTHO05D002399 5.0e-10 69.3 61 54.1
Nn5g27348 Nelumbo nucifera HOM05D000572 ORTHO05D002399 5.0e-10 69.3 70 44.3
Carub.0004s0387 Capsella rubella HOM05D000572 ORTHO05D002399 6.6e-10 68.9 60 51.7
AUR62028016 Chenopodium quinoa HOM05D000572 ORTHO05D002399 6.6e-10 68.9 67 53.7
Lj3g0025806 Lotus japonicus HOM05D000572 ORTHO05D002399 6.6e-10 68.9 61 49.2
Lalb_Chr01g0008651 Lupinus albus HOM05D000572 ORTHO05D002399 6.6e-10 68.9 67 46.3
SEGI_11646 Sequoiadendron giganteum HOM05D000572 ORTHO05D002399 6.6e-10 68.9 82 45.1
Thhalv10003514m.g Eutrema salsugineum HOM05D000572 ORTHO05D002399 8.6e-10 68.6 66 54.5
Lj5g0006387 Lotus japonicus HOM05D000572 ORTHO05D002399 8.6e-10 68.6 67 44.8
Potri.018G138000 Populus trichocarpa HOM05D000572 ORTHO05D002399 8.6e-10 68.6 70 45.7
Potri.T046100 Populus trichocarpa HOM05D000572 ORTHO05D002399 8.6e-10 68.6 70 45.7
ATR0584G123 Amborella trichopoda HOM05D000572 ORTHO05D002399 1.1e-09 68.2 56 58.9
Glyma.04G187600 Glycine max HOM05D000572 ORTHO05D002399 1.1e-09 68.2 61 50.8
MD02G1115100 Malus domestica HOM05D000572 ORTHO05D002399 1.1e-09 68.2 70 48.6
Peaxi162Scf01053g00039 Petunia axillaris HOM05D000572 ORTHO05D002399 1.1e-09 68.2 71 46.5
Lj2g0020412 Lotus japonicus HOM05D000572 ORTHO05D002399 1.5e-09 67.8 61 47.5
Oeu046383.1 Olea europaea HOM05D000572 ORTHO05D002399 1.5e-09 67.8 70 48.6
TWI63G0302 Tripterygium wilfordii HOM05D000572 ORTHO05D002399 1.5e-09 67.8 71 46.5
VMungo0464G1362 Vigna mungo HOM05D000572 ORTHO05D002399 1.9e-09 67.4 69 46.4
CsaV3_5G013990 Cucumis sativus L. HOM05D000572 ORTHO05D002399 2.5e-09 67.0 91 45.1
Migut.N00875 Erythranthe guttata HOM05D000572 ORTHO05D002399 2.5e-09 67.0 59 52.5
Medtr3g026190 Medicago truncatula HOM05D000572 ORTHO05D002399 2.5e-09 67.0 61 52.5
Sabra19G0000100 Salix brachista HOM05D000572 ORTHO05D002399 2.5e-09 67.0 70 44.3
A09p57170 Brassica napus HOM05D000572 ORTHO05D002399 3.3e-09 66.6 82 42.7
BraA09t41110Z Brassica rapa HOM05D000572 ORTHO05D002399 3.3e-09 66.6 82 42.7
Thhalv10000011m.g Eutrema salsugineum HOM05D000572 ORTHO05D002399 3.3e-09 66.6 59 57.6
Psat1g114520 Pisum sativum HOM05D000572 ORTHO05D002399 3.3e-09 66.6 61 47.5
SEGI_09529 Sequoiadendron giganteum HOM05D000572 ORTHO05D002399 3.3e-09 66.6 68 50.0
Cc02_g23510 Coffea canephora HOM05D000572 ORTHO05D002399 4.3e-09 66.2 71 47.9
Phvul.004G133200 Phaseolus vulgaris HOM05D000572 ORTHO05D002399 4.3e-09 66.2 61 47.5
Ca_03350_v3 Cicer arietinum L. HOM05D000572 ORTHO05D002399 5.6e-09 65.9 61 49.2
SEGI_20274 Sequoiadendron giganteum HOM05D000572 ORTHO05D002399 5.6e-09 65.9 68 51.5
HPP92_005786 Vanilla planifolia HOM05D000572 ORTHO05D002399 5.6e-09 65.9 71 43.7
HPP92_005803 Vanilla planifolia HOM05D000572 ORTHO05D002399 5.6e-09 65.9 71 43.7
AL7G42360 Arabidopsis lyrata HOM05D000572 ORTHO05D002399 7.3e-09 65.5 67 47.8
AT4G14140 Arabidopsis thaliana HOM05D000572 ORTHO05D002399 7.3e-09 65.5 61 50.8
Os03g0798300 Oryza sativa ssp. japonica HOM05D000572 ORTHO05D002399 7.3e-09 65.5 61 50.8
AT4G08990 Arabidopsis thaliana HOM05D000572 ORTHO05D002399 9.5e-09 65.1 61 50.8
BcaC07g41015 Brassica carinata HOM05D000572 ORTHO05D002399 1.6e-08 64.3 82 41.5
C04p52290 Brassica napus HOM05D000572 ORTHO05D002399 1.6e-08 64.3 79 45.6
C08p40170 Brassica napus HOM05D000572 ORTHO05D002399 1.6e-08 64.3 82 41.5
BolC8t51587H Brassica oleracea HOM05D000572 ORTHO05D002399 1.6e-08 64.3 82 41.5
CARHR185440 Cardamine hirsuta HOM05D000572 ORTHO05D002399 1.6e-08 64.3 55 54.5
CSS0010612 Camellia sinensis var. sinensis HOM05D000572 ORTHO05D002399 2.1e-08 63.9 71 46.5
Prupe.7G060100 Prunus persica HOM05D000572 ORTHO05D002399 2.1e-08 63.9 54 57.4
VMungo0464G1539 Vigna mungo HOM05D000572 ORTHO05D002399 2.1e-08 63.9 61 49.2
BcaC02g08585 Brassica carinata HOM05D000572 ORTHO05D002399 2.8e-08 63.5 79 44.3
A04p17510 Brassica napus HOM05D000572 ORTHO05D002399 2.8e-08 63.5 79 44.3
BolC4t26803H Brassica oleracea HOM05D000572 ORTHO05D002399 2.8e-08 63.5 79 44.3
BraA04t17374Z Brassica rapa HOM05D000572 ORTHO05D002399 2.8e-08 63.5 79 44.3
AT4G13610 Arabidopsis thaliana HOM05D000572 ORTHO05D002399 3.6e-08 63.2 55 52.7
CSS0040103 Camellia sinensis var. sinensis HOM05D000572 ORTHO05D002399 3.6e-08 63.2 71 46.5
BcaB06g27851 Brassica carinata HOM05D000572 ORTHO05D002399 6.1e-08 62.4 66 47.0
Sp2g19890 Schrenkiella parvula HOM05D000572 ORTHO05D002399 2.3e-07 60.5 60 51.7
Sp4g01970 Schrenkiella parvula HOM05D000572 ORTHO05D002399 3.1e-07 60.1 66 48.5
CARHR182500 Cardamine hirsuta HOM05D000572 ORTHO05D002399 5.2e-07 59.3 61 47.5
Carub.0007s2893 Capsella rubella HOM05D000572 ORTHO05D002399 6.8e-07 58.9 55 47.3
Oeu008467.1 Olea europaea HOM05D000572 ORTHO05D002399 6.8e-07 58.9 59 50.8
Thhalv10005683m.g Eutrema salsugineum HOM05D000572 ORTHO05D002399 2.0e-06 57.4 59 47.5
AL7G42980 Arabidopsis lyrata HOM05D000572 ORTHO05D002399 4.4e-06 56.2 55 52.7
CARHR287800 Cardamine hirsuta HOM05D000572 ORTHO05D002399 5.8e-06 55.8 62 50.0
CDE01G0823 Ceratophyllum demersum HOM05D000572 ORTHO05D002399 5.8e-06 55.8 57 50.9
BolC7t44532H Brassica oleracea HOM05D000572 ORTHO05D002399 9.8e-06 55.1 56 46.4


User provided reference genes

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