Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g047430 Amaranthus hybridus HOM05D005460 ORTHO05D008059 4.7e-244 847.4 430 100.0
EL10Ac5g11188 Beta vulgaris HOM05D005460 ORTHO05D008059 3.1e-142 509.2 474 61.6
Hund09954 Selenicereus undatus HOM05D005460 ORTHO05D008059 6.4e-140 501.5 437 62.5
Sc04g0003880 Simmondsia chinensis HOM05D005460 ORTHO05D008059 8.6e-129 464.5 443 59.6
AUR62039669 Chenopodium quinoa HOM05D005460 ORTHO05D008059 4.7e-127 458.8 337 71.2
QL10p020708 Quercus lobata HOM05D005460 ORTHO05D008059 8.1e-127 458.0 446 57.4
CSS0025897 Camellia sinensis var. sinensis HOM05D005460 ORTHO05D008059 1.4e-126 457.2 359 66.9
Actinidia04798 Actinidia chinensis HOM05D005460 ORTHO05D008059 4.0e-126 455.7 434 58.3
TAR629G3051 Trochodendron aralioides HOM05D005460 ORTHO05D008059 1.2e-125 454.1 450 58.7
Dinv07972 Davidia involucrata HOM05D005460 ORTHO05D008059 1.5e-125 453.8 418 60.5
Nn3g17530 Nelumbo nucifera HOM05D005460 ORTHO05D008059 2.6e-125 453.0 414 60.9
PSO478G1652 Papaver somniferum HOM05D005460 ORTHO05D008059 9.9e-125 451.1 449 58.1
GSVIVG01008151001 Vitis vinifera HOM05D005460 ORTHO05D008059 3.7e-124 449.1 407 59.7
Cfa017734 Carpinus fangiana HOM05D005460 ORTHO05D008059 1.1e-123 447.6 426 58.0
Haze_18509 Corylus avellana HOM05D005460 ORTHO05D008059 1.1e-123 447.6 425 59.1
Ciclev10018555m.g Citrus clementina HOM05D005460 ORTHO05D008059 6.0e-122 441.8 411 59.4
Migut.I00363 Erythranthe guttata HOM05D005460 ORTHO05D008059 5.1e-121 438.7 430 54.9
Manes.06G081200 Manihot esculenta HOM05D005460 ORTHO05D008059 1.5e-120 437.2 425 57.4
CiPaw.15G113700 Carya illinoinensis HOM05D005460 ORTHO05D008059 1.9e-120 436.8 423 57.4
Duzib068G0250 Durio zibethinus HOM05D005460 ORTHO05D008059 2.5e-120 436.4 421 58.0
MBI16_g07042_MAGBIO Magnolia biondii HOM05D005460 ORTHO05D008059 5.6e-120 435.3 431 55.9
Aqoxy3G00547_Aqoxy3G00548 Aquilegia oxysepala HOM05D005460 ORTHO05D008059 1.6e-119 433.7 449 54.8
Lj9A438G54 Lonicera japonica HOM05D005460 ORTHO05D008059 1.6e-119 433.7 316 70.6
Cc04_g08300 Coffea canephora HOM05D005460 ORTHO05D008059 1.8e-118 430.3 430 54.7
MD14G1216300 Malus domestica HOM05D005460 ORTHO05D008059 3.1e-118 429.5 439 56.0
Nitab4.5_0005994g0060 Nicotiana tabacum HOM05D005460 ORTHO05D008059 8.9e-118 427.9 431 56.1
TWI60G0358 Tripterygium wilfordii HOM05D005460 ORTHO05D008059 8.9e-118 427.9 427 57.4
TWI60G1488 Tripterygium wilfordii HOM05D005460 ORTHO05D008059 8.9e-118 427.9 427 57.4
SGA_v2.0_scaffold25G10948 Striga asiatica HOM05D005460 ORTHO05D008059 2.6e-117 426.4 448 52.7
Lsat_1_v5_gn_4_113721 Lactuca sativa HOM05D005460 ORTHO05D008059 7.6e-117 424.9 427 55.0
Gohir.D11G037400 Gossypium hirsutum HOM05D005460 ORTHO05D008059 9.9e-117 424.5 429 55.7
THA.LOC104818356 Tarenaya hassleriana HOM05D005460 ORTHO05D008059 9.9e-117 424.5 428 55.8
Peaxi162Scf00017g03272 Petunia axillaris HOM05D005460 ORTHO05D008059 4.9e-116 422.2 438 54.8
HanXRQChr09g0270461 Helianthus annuus HOM05D005460 ORTHO05D008059 8.4e-116 421.4 427 54.1
Solyc03g114780.3 Solanum lycopersicum HOM05D005460 ORTHO05D008059 8.4e-116 421.4 441 54.0
TPR.G14357 Trifolium pratense HOM05D005460 ORTHO05D008059 8.4e-116 421.4 401 56.9
Cpa.g.sc3.237 Carica papaya HOM05D005460 ORTHO05D008059 1.4e-115 420.6 433 53.8
Sopen03g033860 Solanum pennellii HOM05D005460 ORTHO05D008059 1.4e-115 420.6 440 54.3
COL.COLO4_27492 Corchorus olitorius HOM05D005460 ORTHO05D008059 1.9e-115 420.2 416 55.8
Gohir.A11G034000 Gossypium hirsutum HOM05D005460 ORTHO05D008059 1.9e-115 420.2 429 55.5
Gorai.007G040200 Gossypium raimondii HOM05D005460 ORTHO05D008059 3.2e-115 419.5 349 63.9
Potri.012G063500 Populus trichocarpa HOM05D005460 ORTHO05D008059 5.4e-115 418.7 417 55.2
Thecc.03G107700 Theobroma cacao HOM05D005460 ORTHO05D008059 5.4e-115 418.7 427 56.7
arahy.Tifrunner.gnm1.ann1.LBS82T Arachis hypogaea HOM05D005460 ORTHO05D008059 7.1e-115 418.3 420 56.4
Lj1g0006842 Lotus japonicus HOM05D005460 ORTHO05D008059 7.1e-115 418.3 411 57.7
Prupe.5G209800 Prunus persica HOM05D005460 ORTHO05D008059 7.1e-115 418.3 432 53.7
Nitab4.5_0002467g0140 Nicotiana tabacum HOM05D005460 ORTHO05D008059 9.2e-115 417.9 348 63.5
Psat1g126760 Pisum sativum HOM05D005460 ORTHO05D008059 9.2e-115 417.9 409 56.7
VMungo1309G0936 Vigna mungo HOM05D005460 ORTHO05D008059 2.7e-114 416.4 414 55.3
arahy.Tifrunner.gnm1.ann1.N0CKJ9 Arachis hypogaea HOM05D005460 ORTHO05D008059 6.0e-114 415.2 420 55.2
RcHm_v2.0_Chr7g0183711 Rosa chinensis HOM05D005460 ORTHO05D008059 1.3e-113 414.1 430 54.9
ClCG06G015450 Citrullus lanatus HOM05D005460 ORTHO05D008059 1.1e-112 411.0 360 60.3
MSTRG.22948 Avicennia marina HOM05D005460 ORTHO05D008059 1.9e-112 410.2 425 52.7
Glyma.06G206000 Glycine max HOM05D005460 ORTHO05D008059 3.3e-112 409.5 426 55.2
Oeu005512.2 Olea europaea HOM05D005460 ORTHO05D008059 9.6e-112 407.9 278 73.0
Phvul.009G203700 Phaseolus vulgaris HOM05D005460 ORTHO05D008059 9.6e-112 407.9 406 55.7
ECA232G2972 Erigeron canadensis HOM05D005460 ORTHO05D008059 1.6e-111 407.1 424 53.8
PGR031G2062 Punica granatum HOM05D005460 ORTHO05D008059 2.1e-111 406.8 412 54.6
MELO3C017248.2 Cucumis melo HOM05D005460 ORTHO05D008059 2.8e-111 406.4 420 55.2
CsaV3_1G003350 Cucumis sativus L. HOM05D005460 ORTHO05D008059 1.8e-110 403.7 405 56.3
Medtr2g461560 Medicago truncatula HOM05D005460 ORTHO05D008059 1.8e-110 403.7 407 56.0
BcaB08g37287 Brassica carinata HOM05D005460 ORTHO05D008059 3.1e-110 402.9 428 53.7
Sed0020336 Sechium edule HOM05D005460 ORTHO05D008059 4.0e-110 402.5 373 57.9
C09p68840 Brassica napus HOM05D005460 ORTHO05D008059 1.5e-109 400.6 428 52.6
Lalb_Chr11g0071861 Lupinus albus HOM05D005460 ORTHO05D008059 2.0e-109 400.2 409 54.8
CANSAT80G0202 Cannabis sativa HOM05D005460 ORTHO05D008059 3.4e-109 399.4 332 63.3
A10p28560 Brassica napus HOM05D005460 ORTHO05D008059 2.2e-108 396.7 426 52.1
BolC9t59631H Brassica oleracea HOM05D005460 ORTHO05D008059 2.2e-108 396.7 432 51.9
ATR0827G052 Amborella trichopoda HOM05D005460 ORTHO05D008059 2.9e-108 396.4 423 53.2
Eucgr.K02548 Eucalyptus grandis HOM05D005460 ORTHO05D008059 2.9e-108 396.4 420 52.9
BraA10t44905Z Brassica rapa HOM05D005460 ORTHO05D008059 3.8e-108 396.0 432 51.6
Aa31LG3G18430 Aethionema arabicum HOM05D005460 ORTHO05D008059 7.1e-107 391.7 288 68.8
FvH4_5g13410 Fragaria vesca HOM05D005460 ORTHO05D008059 9.3e-107 391.3 421 53.9
Thhalv10012480m.g Eutrema salsugineum HOM05D005460 ORTHO05D008059 2.1e-106 390.2 424 52.4
FAN08G0483 Fragaria x ananassa HOM05D005460 ORTHO05D008059 4.6e-106 389.0 435 52.2
FAN13G3146 Fragaria x ananassa HOM05D005460 ORTHO05D008059 6.6e-105 385.2 434 52.1
Carub.0006s0699 Capsella rubella HOM05D005460 ORTHO05D008059 9.6e-104 381.3 420 51.7
AUR62032136 Chenopodium quinoa HOM05D005460 ORTHO05D008059 8.1e-103 378.3 355 61.4
Sp6g34850 Schrenkiella parvula HOM05D005460 ORTHO05D008059 1.4e-102 377.5 291 64.9
vmacro17637 Vaccinium macrocarpon HOM05D005460 ORTHO05D008059 4.0e-102 375.9 452 49.8
AL6G18480 Arabidopsis lyrata HOM05D005460 ORTHO05D008059 5.3e-102 375.6 422 50.7
FAN18G2313 Fragaria x ananassa HOM05D005460 ORTHO05D008059 2.0e-101 373.6 455 50.3
Rhsim08G0141800 Rhododendron simsii HOM05D005460 ORTHO05D008059 5.8e-101 372.1 468 49.8
Ca_02783_v3 Cicer arietinum L. HOM05D005460 ORTHO05D008059 7.6e-101 371.7 374 55.3
Zm00001eb327130 Zea mays HOM05D005460 ORTHO05D008059 4.9e-100 369.0 304 59.9
AT5G08110 Arabidopsis thaliana HOM05D005460 ORTHO05D008059 6.4e-100 368.6 433 49.9
Prupe.5G209300 Prunus persica HOM05D005460 ORTHO05D008059 2.1e-98 363.6 304 63.8
SHI17427 Sapria himalayana HOM05D005460 ORTHO05D008059 4.6e-98 362.5 274 67.2
HPP92_007735 Vanilla planifolia HOM05D005460 ORTHO05D008059 5.6e-96 355.5 418 47.6
Hma1.2p1_2037F.1_g311980 Hydrangea macrophylla HOM05D005460 ORTHO05D008059 4.0e-94 349.4 266 67.3
Os02g0111900 Oryza sativa ssp. japonica HOM05D005460 ORTHO05D008059 4.0e-94 349.4 283 59.0
Pp3c5_22230 Physcomitrium patens HOM05D005460 ORTHO05D008059 1.1e-86 324.7 284 58.1
AagrBONN_evm.TU.Sc2ySwM_344.3544 Anthoceros agrestis HOM05D005460 ORTHO05D008059 2.2e-84 317.0 393 45.0
CBR_g50975 Chara braunii HOM05D005460 ORTHO05D008059 2.6e-77 293.5 284 53.9
SEGI_12628 Sequoiadendron giganteum HOM05D005460 ORTHO05D008059 8.2e-63 245.4 172 66.3
MCO09G659 Micromonas commoda HOM05D005460 ORTHO05D008059 1.7e-60 237.7 311 44.1
PRCOL_00000536 Prasinoderma coloniale HOM05D005460 ORTHO05D008059 2.6e-53 213.8 338 39.9
Pp3c7_15450 Physcomitrium patens HOM05D005460 ORTHO05D008059 8.5e-52 208.8 277 41.5
Pp3c7_15456 Physcomitrium patens HOM05D005460 ORTHO05D008059 8.5e-52 208.8 277 41.5
SMO203G0199 Selaginella moellendorffii HOM05D005460 ORTHO05D008059 4.2e-51 206.5 304 39.5
Pp3s405_10 Physcomitrium patens HOM05D005460 ORTHO05D008059 7.2e-51 205.7 276 41.7
Cre03.g187700 Chlamydomonas reinhardtii HOM05D005460 ORTHO05D008059 2.1e-50 204.1 448 34.4
AagrBONN_evm.TU.Sc2ySwM_344.4214 Anthoceros agrestis HOM05D005460 ORTHO05D008059 1.4e-49 201.4 290 41.7
DCAR_011574 Daucus carota HOM05D005460 ORTHO05D008059 8.3e-47 192.2 133 71.4
Os07g0606500 Oryza sativa ssp. japonica HOM05D005460 ORTHO05D008059 3.2e-43 180.3 105 74.3
SEGI_17125 Sequoiadendron giganteum HOM05D005460 ORTHO05D008059 2.8e-39 167.2 167 56.3
MCO07G109 Micromonas commoda HOM05D005460 ORTHO05D008059 1.5e-35 154.8 295 36.6
CARHR205080 Cardamine hirsuta HOM05D005460 ORTHO05D008059 2.3e-33 147.5 88 76.1
SEGI_40089 Sequoiadendron giganteum HOM05D005460 ORTHO05D008059 2.3e-33 147.5 118 63.6
QL01p024738 Quercus lobata HOM05D005460 ORTHO05D008059 5.0e-28 129.8 115 63.5
Cfa022214 Carpinus fangiana HOM05D005460 ORTHO05D124255 3.4e-24 117.1 115 47.0
Psat7g070520 Pisum sativum HOM05D005460 ORTHO05D008059 4.9e-23 113.2 194 39.7
BcaB08g37286 Brassica carinata HOM05D005460 ORTHO05D006058 1.1e-19 102.1 197 36.5
Lsat_1_v5_gn_2_72741 Lactuca sativa HOM05D005460 ORTHO05D000550 1.7e-12 78.2 202 30.2
Lsat_1_v5_gn_2_72781 Lactuca sativa HOM05D005460 ORTHO05D000550 6.6e-12 76.3 71 53.5
Pp3c22_7840 Physcomitrium patens HOM05D000032 ORTHO05D004353 4.9e-07 60.1 209 27.8
Aqoxy5G02318 Aquilegia oxysepala HOM05D000032 ORTHO05D003522 8.4e-07 59.3 173 34.1


User provided reference genes

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