Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g228980 Amaranthus hybridus HOM05D001072 ORTHO05D006807 1.6e-56 222.6 118 100.0
EL10Ac8g18974 Beta vulgaris HOM05D001072 ORTHO05D006807 2.7e-40 168.7 103 86.4
AUR62025311 Chenopodium quinoa HOM05D001072 ORTHO05D006807 7.8e-40 167.2 103 86.4
AUR62028316 Chenopodium quinoa HOM05D001072 ORTHO05D006807 1.7e-39 166.0 103 84.5
Sc06g0008120 Simmondsia chinensis HOM05D001072 ORTHO05D006807 1.9e-33 146.0 103 75.7
Hund08884 Selenicereus undatus HOM05D001072 ORTHO05D006807 2.7e-32 142.1 103 72.8
CSS0035690 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 4.7e-29 131.3 103 67.0
Actinidia32600 Actinidia chinensis HOM05D001072 ORTHO05D006807 1.1e-28 130.2 103 64.1
Dinv12247 Davidia involucrata HOM05D001072 ORTHO05D006807 2.4e-28 129.0 103 64.1
Ciclev10000015m.g Citrus clementina HOM05D001072 ORTHO05D006807 3.1e-28 128.6 105 65.7
Nn2g11057 Nelumbo nucifera HOM05D001072 ORTHO05D006807 5.2e-28 127.9 103 63.1
Thecc.09G359500 Theobroma cacao HOM05D001072 ORTHO05D006807 5.2e-28 127.9 105 64.8
Duzib168G2177 Durio zibethinus HOM05D001072 ORTHO05D006807 1.2e-27 126.7 105 65.7
CiPaw.13G067600 Carya illinoinensis HOM05D001072 ORTHO05D006807 3.4e-27 125.2 104 64.4
Haze_24430 Corylus avellana HOM05D001072 ORTHO05D006807 3.4e-27 125.2 104 64.4
MSTRG.21246 Avicennia marina HOM05D001072 ORTHO05D006807 7.6e-27 124.0 104 64.4
Cc01_g15000 Coffea canephora HOM05D001072 ORTHO05D006807 7.6e-27 124.0 103 64.1
Nitab4.5_0000046g0010 Nicotiana tabacum HOM05D001072 ORTHO05D006807 7.6e-27 124.0 103 61.2
Nitab4.5_0000684g0150 Nicotiana tabacum HOM05D001072 ORTHO05D006807 7.6e-27 124.0 103 61.2
MBI03_g13045_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 1.3e-26 123.2 103 60.2
Cpa.g.sc2.338 Carica papaya HOM05D001072 ORTHO05D006807 1.7e-26 122.9 105 62.9
CANSAT54G0981 Cannabis sativa HOM05D001072 ORTHO05D006807 3.8e-26 121.7 104 61.5
COL.COLO4_11172 Corchorus olitorius HOM05D001072 ORTHO05D006807 4.9e-26 121.3 105 62.9
Potri.019G126000 Populus trichocarpa HOM05D001072 ORTHO05D006807 4.9e-26 121.3 107 62.6
SGA_v2.0_scaffold20G09297 Striga asiatica HOM05D001072 ORTHO05D006807 4.9e-26 121.3 104 61.5
THA.LOC104810689 Tarenaya hassleriana HOM05D001072 ORTHO05D006807 4.9e-26 121.3 106 63.2
Manes.18G136800 Manihot esculenta HOM05D001072 ORTHO05D006807 6.4e-26 120.9 105 63.8
Prupe.6G045900 Prunus persica HOM05D001072 ORTHO05D006807 8.4e-26 120.6 104 62.5
Sp6g20090 Schrenkiella parvula HOM05D001072 ORTHO05D006807 2.4e-25 119.0 105 59.0
Sopen09g017350 Solanum pennellii HOM05D001072 ORTHO05D006807 2.4e-25 119.0 103 60.2
Solyc09g055260.4 Solanum lycopersicum HOM05D001072 ORTHO05D006807 3.2e-25 118.6 103 60.2
vmacro02906 Vaccinium macrocarpon HOM05D001072 ORTHO05D006807 3.2e-25 118.6 111 59.5
AT5G58410 Arabidopsis thaliana HOM05D001072 ORTHO05D006807 4.2e-25 118.2 104 60.6
Sed0011357 Sechium edule HOM05D001072 ORTHO05D006807 4.2e-25 118.2 108 63.0
A03p12250 Brassica napus HOM05D001072 ORTHO05D006807 5.4e-25 117.9 105 58.1
BraA03t10536Z Brassica rapa HOM05D001072 ORTHO05D006807 5.4e-25 117.9 105 58.1
PGR119G0697 Punica granatum HOM05D001072 ORTHO05D006807 5.4e-25 117.9 106 62.3
BolC3t13881H Brassica oleracea HOM05D001072 ORTHO05D006807 7.1e-25 117.5 105 58.1
MELO3C020494.2 Cucumis melo HOM05D001072 ORTHO05D006807 7.1e-25 117.5 106 61.3
CsaV3_1G036730 Cucumis sativus L. HOM05D001072 ORTHO05D006807 7.1e-25 117.5 106 61.3
PGSC0003DMG401017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 7.1e-25 117.5 103 60.2
MD03G1058100 Malus domestica HOM05D001072 ORTHO05D006807 9.3e-25 117.1 104 60.6
QL01p025823 Quercus lobata HOM05D001072 ORTHO05D006807 9.3e-25 117.1 105 63.8
Rhsim13G0062700 Rhododendron simsii HOM05D001072 ORTHO05D006807 9.3e-25 117.1 104 61.5
Atru.chr1.2576 Acer truncatum HOM05D001072 ORTHO05D006807 1.2e-24 116.7 107 61.7
C03p14380 Brassica napus HOM05D001072 ORTHO05D006807 1.2e-24 116.7 105 57.1
CSS0014731 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 1.2e-24 116.7 84 69.0
CARHR272240 Cardamine hirsuta HOM05D001072 ORTHO05D006807 1.2e-24 116.7 106 57.5
Migut.D00839 Erythranthe guttata HOM05D001072 ORTHO05D006807 1.2e-24 116.7 104 59.6
BcaB01g04524 Brassica carinata HOM05D001072 ORTHO05D006807 1.6e-24 116.3 106 56.6
TWI31G1315 Tripterygium wilfordii HOM05D001072 ORTHO05D006807 1.6e-24 116.3 104 58.7
BcaB08g36177 Brassica carinata HOM05D001072 ORTHO05D006807 2.1e-24 115.9 105 58.1
CDE04G3416 Ceratophyllum demersum HOM05D001072 ORTHO05D006807 2.7e-24 115.5 103 55.3
HanXRQChr10g0312111 Helianthus annuus HOM05D001072 ORTHO05D006807 2.7e-24 115.5 107 63.6
AL8G34570 Arabidopsis lyrata HOM05D001072 ORTHO05D006807 3.5e-24 115.2 104 58.7
RcHm_v2.0_Chr5g0071961 Rosa chinensis HOM05D001072 ORTHO05D006807 3.5e-24 115.2 104 60.6
PSO017G5353 Papaver somniferum HOM05D001072 ORTHO05D006807 4.6e-24 114.8 103 57.3
A10p15850 Brassica napus HOM05D001072 ORTHO05D006807 1.0e-23 113.6 105 56.2
BraA10t43640Z Brassica rapa HOM05D001072 ORTHO05D006807 1.0e-23 113.6 105 56.2
Sabra19G0124000 Salix brachista HOM05D001072 ORTHO05D006807 1.0e-23 113.6 107 60.7
Sabra19G0130600 Salix brachista HOM05D001072 ORTHO05D006807 1.0e-23 113.6 107 60.7
HPP92_011994 Vanilla planifolia HOM05D001072 ORTHO05D006807 1.0e-23 113.6 104 57.7
BcaC04g19869 Brassica carinata HOM05D001072 ORTHO05D006807 1.7e-23 112.8 105 56.2
C09p50300 Brassica napus HOM05D001072 ORTHO05D006807 1.7e-23 112.8 105 56.2
BolC9t57885H Brassica oleracea HOM05D001072 ORTHO05D006807 1.7e-23 112.8 105 56.2
ECA236G3191 Erigeron canadensis HOM05D001072 ORTHO05D006807 1.7e-23 112.8 107 63.6
Thhalv10012416m.g Eutrema salsugineum HOM05D001072 ORTHO05D006807 1.7e-23 112.8 105 57.1
Aqoxy4G02167 Aquilegia oxysepala HOM05D001072 ORTHO05D006807 3.0e-23 112.1 103 55.3
FvH4_3g39950 Fragaria vesca HOM05D001072 ORTHO05D006807 3.9e-23 111.7 105 59.0
FAN25G0381 Fragaria x ananassa HOM05D001072 ORTHO05D006807 3.9e-23 111.7 105 59.0
PSO170G6524 Papaver somniferum HOM05D001072 ORTHO05D006807 3.9e-23 111.7 104 57.7
HPP92_012011 Vanilla planifolia HOM05D001072 ORTHO05D006807 5.1e-23 111.3 104 56.7
Carub.0008s1900 Capsella rubella HOM05D001072 ORTHO05D006807 8.7e-23 110.5 105 56.2
Phvul.008G250900 Phaseolus vulgaris HOM05D001072 ORTHO05D006807 8.7e-23 110.5 106 57.5
LjContig00141g0020287 Lotus japonicus HOM05D001072 ORTHO05D006807 1.5e-22 109.8 105 59.0
Gohir.A03G024800 Gossypium hirsutum HOM05D001072 ORTHO05D006807 1.9e-22 109.4 107 57.9
Gohir.D03G143700 Gossypium hirsutum HOM05D001072 ORTHO05D006807 1.9e-22 109.4 107 57.9
Gorai.003G151000 Gossypium raimondii HOM05D001072 ORTHO05D006807 1.9e-22 109.4 107 57.9
ATR0681G329 Amborella trichopoda HOM05D001072 ORTHO05D006807 3.3e-22 108.6 103 55.3
Lsat_1_v5_gn_8_108741 Lactuca sativa HOM05D001072 ORTHO05D006807 3.3e-22 108.6 104 57.7
Psat2g054080 Pisum sativum HOM05D001072 ORTHO05D006807 5.6e-22 107.8 108 56.5
DCAR_018643 Daucus carota HOM05D001072 ORTHO05D006807 2.1e-21 105.9 104 56.7
FAN16G0450 Fragaria x ananassa HOM05D001072 ORTHO05D006807 2.8e-21 105.5 107 57.0
TPR.G25340 Trifolium pratense HOM05D001072 ORTHO05D006807 2.8e-21 105.5 108 54.6
SEGI_04376 Sequoiadendron giganteum HOM05D001072 ORTHO05D006807 1.4e-20 103.2 104 53.8
Ca_05680_v3 Cicer arietinum L. HOM05D001072 ORTHO05D006807 3.1e-20 102.1 108 52.8
Glyma.02G232900 Glycine max HOM05D001072 ORTHO05D006807 3.1e-20 102.1 106 55.7
Lalb_Chr04g0251881 Lupinus albus HOM05D001072 ORTHO05D006807 5.3e-20 101.3 110 54.5
VMungo0647G0153 Vigna mungo HOM05D001072 ORTHO05D006807 2.0e-19 99.4 132 47.0
FAN11G0037 Fragaria x ananassa HOM05D001072 ORTHO05D006807 3.8e-18 95.1 138 44.2
TAR623G0321 Trochodendron aralioides HOM05D001072 ORTHO05D006807 8.4e-18 94.0 89 55.1
TAR623G1063 Trochodendron aralioides HOM05D001072 ORTHO05D006807 8.4e-18 94.0 89 55.1
arahy.Tifrunner.gnm1.ann1.XX59BG Arachis hypogaea HOM05D001072 ORTHO05D006807 1.4e-17 93.2 111 51.4
arahy.Tifrunner.gnm1.ann1.QD7CJP Arachis hypogaea HOM05D001072 ORTHO05D006807 2.4e-17 92.4 110 50.9
Medtr5g074510 Medicago truncatula HOM05D001072 ORTHO05D006807 7.1e-17 90.9 109 50.5
Pp3c11_1040 Physcomitrium patens HOM05D001072 ORTHO05D006807 7.1e-17 90.9 104 52.9
SMO367G0609 Selaginella moellendorffii HOM05D001072 ORTHO05D006807 1.2e-16 90.1 104 49.0
AagrBONN_evm.TU.Sc2ySwM_344.918 Anthoceros agrestis HOM05D001072 ORTHO05D006807 2.1e-16 89.4 105 48.6
Os01g0977600 Oryza sativa ssp. japonica HOM05D001072 ORTHO05D006807 3.5e-16 88.6 111 51.4
Zm00001eb093280 Zea mays HOM05D001072 ORTHO05D006807 1.0e-15 87.0 108 52.8
unitig_0.g202 Utricularia gibba HOM05D001072 ORTHO05D006807 1.8e-15 86.3 86 48.8
Mapoly0076s0060 Marchantia polymorpha HOM05D001072 ORTHO05D006807 2.3e-15 85.9 105 49.5
Lj2A1095G45 Lonicera japonica HOM05D001072 ORTHO05D006807 9.6e-14 80.5 61 65.6
ClCG03G000170 Citrullus lanatus HOM05D001072 ORTHO05D006807 2.8e-13 79.0 106 50.0
FAN21G1089 Fragaria x ananassa HOM05D001072 ORTHO05D006807 2.8e-13 79.0 179 34.6
Oeu050029.1 Olea europaea HOM05D001072 ORTHO05D006807 3.8e-10 68.6 46 67.4


User provided reference genes

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