Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g226470 Amaranthus hybridus HOM05D003791 ORTHO05D019539 1.7e-99 365.9 178 100.0
AUR62024040 Chenopodium quinoa HOM05D003791 ORTHO05D004961 8.6e-75 283.9 173 82.1
EL10Ac9g20994 Beta vulgaris HOM05D003791 ORTHO05D004961 2.4e-61 239.2 173 67.1
Hund00856 Selenicereus undatus HOM05D003791 ORTHO05D004961 4.5e-55 218.4 171 62.0
Ah.13g066400 Amaranthus hybridus HOM05D003791 ORTHO05D019539 1.0e-51 207.2 105 94.3
GSVIVG01031443001 Vitis vinifera HOM05D003791 ORTHO05D004961 2.4e-48 196.1 170 58.8
Duzib168G1694 Durio zibethinus HOM05D003791 ORTHO05D004961 1.2e-47 193.7 171 57.9
Ah.10g024760 Amaranthus hybridus HOM05D001024 ORTHO05D000878 2.6e-47 192.6 143 71.3
AUR62040427 Chenopodium quinoa HOM05D003791 ORTHO05D019539 3.4e-47 192.2 101 91.1
Dinv12566 Davidia involucrata HOM05D003791 ORTHO05D004961 1.7e-46 189.9 174 56.9
DCAR_018754 Daucus carota HOM05D003791 ORTHO05D004961 3.8e-46 188.7 169 55.0
Phvul.011G088100 Phaseolus vulgaris HOM05D003791 ORTHO05D004961 1.9e-45 186.4 174 56.3
COL.COLO4_19230 Corchorus olitorius HOM05D003791 ORTHO05D004961 2.4e-45 186.0 154 60.4
VMungo1127G0886 Vigna mungo HOM05D003791 ORTHO05D004961 2.4e-45 186.0 174 56.3
DCAR_006140 Daucus carota HOM05D003791 ORTHO05D004961 3.2e-45 185.7 170 53.5
Lalb_Chr22g0350471 Lupinus albus HOM05D003791 ORTHO05D004961 3.2e-45 185.7 156 58.3
CANSAT64G0962 Cannabis sativa HOM05D003791 ORTHO05D004961 4.2e-45 185.3 169 56.8
Cfa010128 Carpinus fangiana HOM05D003791 ORTHO05D004961 4.2e-45 185.3 170 54.7
Glyma.12G083300 Glycine max HOM05D003791 ORTHO05D004961 5.5e-45 184.9 174 58.0
Glyma.11G191000 Glycine max HOM05D003791 ORTHO05D004961 7.1e-45 184.5 173 56.6
Hma1.2p1_0051F.1_g029640 Hydrangea macrophylla HOM05D003791 ORTHO05D004961 7.1e-45 184.5 173 52.6
Prupe.6G114800 Prunus persica HOM05D003791 ORTHO05D004961 7.1e-45 184.5 159 55.3
Atru.chr3.3491 Acer truncatum HOM05D003791 ORTHO05D004961 9.3e-45 184.1 172 54.7
Actinidia24158 Actinidia chinensis HOM05D003791 ORTHO05D004961 1.2e-44 183.7 150 60.0
FvH4_3g30370 Fragaria vesca HOM05D003791 ORTHO05D004961 1.2e-44 183.7 176 50.6
FAN11G2854 Fragaria x ananassa HOM05D003791 ORTHO05D004961 1.2e-44 183.7 176 50.6
FAN21G1169 Fragaria x ananassa HOM05D003791 ORTHO05D004961 1.2e-44 183.7 176 50.6
FAN21G3702 Fragaria x ananassa HOM05D003791 ORTHO05D004961 1.2e-44 183.7 176 50.6
CiPaw.13G143800 Carya illinoinensis HOM05D003791 ORTHO05D004961 1.6e-44 183.3 170 55.3
QL03p064651 Quercus lobata HOM05D003791 ORTHO05D004961 1.6e-44 183.3 169 55.0
Dinv29393 Davidia involucrata HOM05D003791 ORTHO05D004961 2.1e-44 183.0 173 54.3
Haze_23510 Corylus avellana HOM05D003791 ORTHO05D004961 2.7e-44 182.6 170 54.1
Gohir.A09G087400 Gossypium hirsutum HOM05D003791 ORTHO05D004961 2.7e-44 182.6 167 56.3
TAR623G0647 Trochodendron aralioides HOM05D003791 ORTHO05D004961 2.7e-44 182.6 168 55.4
Thecc.09G295700 Theobroma cacao HOM05D003791 ORTHO05D004961 3.5e-44 182.2 168 57.1
MD03G1129800 Malus domestica HOM05D003791 ORTHO05D004961 6.0e-44 181.4 176 51.7
Nn6g35161 Nelumbo nucifera HOM05D003791 ORTHO05D004961 6.0e-44 181.4 168 54.2
Duzib170G1073 Durio zibethinus HOM05D003791 ORTHO05D004961 7.9e-44 181.0 171 54.4
FAN16G1431 Fragaria x ananassa HOM05D003791 ORTHO05D004961 7.9e-44 181.0 176 50.0
Lj3g0026116 Lotus japonicus HOM05D003791 ORTHO05D004961 7.9e-44 181.0 174 54.6
MELO3C004827.2 Cucumis melo HOM05D003791 ORTHO05D004961 1.0e-43 180.6 179 51.4
MD11G1151700 Malus domestica HOM05D003791 ORTHO05D004961 1.0e-43 180.6 167 53.9
TPR.G35046 Trifolium pratense HOM05D003791 ORTHO05D004961 1.0e-43 180.6 168 55.4
Actinidia07195 Actinidia chinensis HOM05D003791 ORTHO05D004961 1.8e-43 179.9 154 57.8
CsaV3_1G014360 Cucumis sativus L. HOM05D003791 ORTHO05D004961 1.8e-43 179.9 179 51.4
Gohir.D09G087100 Gossypium hirsutum HOM05D003791 ORTHO05D004961 1.8e-43 179.9 166 56.0
Gorai.006G103500 Gossypium raimondii HOM05D003791 ORTHO05D004961 1.8e-43 179.9 166 56.0
QL01p014586 Quercus lobata HOM05D003791 ORTHO05D004961 1.8e-43 179.9 169 54.4
CSS0014729 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 2.3e-43 179.5 170 53.5
Gohir.A08G003200 Gossypium hirsutum HOM05D003791 ORTHO05D004961 2.3e-43 179.5 166 56.6
Ciclev10027764m.g Citrus clementina HOM05D003791 ORTHO05D004961 3.0e-43 179.1 169 55.0
RcHm_v2.0_Chr5g0056311 Rosa chinensis HOM05D003791 ORTHO05D004961 3.0e-43 179.1 169 52.7
Psat7g191520 Pisum sativum HOM05D003791 ORTHO05D004961 5.1e-43 178.3 170 54.1
ClCG00G003900 Citrullus lanatus HOM05D003791 ORTHO05D004961 6.7e-43 177.9 176 50.6
CiPaw.14G105700 Carya illinoinensis HOM05D003791 ORTHO05D004961 8.7e-43 177.6 171 50.9
Nn2g13909 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.5e-42 176.8 170 53.5
CSS0049530 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.9e-42 176.4 167 53.3
Gohir.D08G013600 Gossypium hirsutum HOM05D003791 ORTHO05D004961 1.9e-42 176.4 163 57.1
PGR102G1149 Punica granatum HOM05D003791 ORTHO05D004961 1.9e-42 176.4 175 52.6
Rhsim13G0102400 Rhododendron simsii HOM05D003791 ORTHO05D004961 1.9e-42 176.4 148 58.1
Oeu035522.1 Olea europaea HOM05D003791 ORTHO05D004961 2.5e-42 176.0 172 52.9
Sed0022437 Sechium edule HOM05D003791 ORTHO05D004961 4.3e-42 175.3 170 51.2
Ca_19327_v3 Cicer arietinum L. HOM05D003791 ORTHO05D004961 7.4e-42 174.5 173 52.6
Migut.N02533 Erythranthe guttata HOM05D003791 ORTHO05D004961 9.6e-42 174.1 150 56.0
Gorai.004G007900 Gossypium raimondii HOM05D003791 ORTHO05D004961 9.6e-42 174.1 163 56.4
Peaxi162Scf00150g00213 Petunia axillaris HOM05D003791 ORTHO05D004961 1.3e-41 173.7 173 51.4
Nitab4.5_0000173g0320 Nicotiana tabacum HOM05D003791 ORTHO05D004961 1.6e-41 173.3 173 50.3
SGA_v2.0_scaffold83G26445 Striga asiatica HOM05D003791 ORTHO05D004961 1.6e-41 173.3 172 53.5
Manes.11G154100 Manihot esculenta HOM05D003791 ORTHO05D004961 2.1e-41 172.9 159 55.3
Medtr4g056480 Medicago truncatula HOM05D003791 ORTHO05D004961 3.7e-41 172.2 180 53.3
Cc01_g10100 Coffea canephora HOM05D003791 ORTHO05D004961 4.8e-41 171.8 169 50.9
TAR369G0287 Trochodendron aralioides HOM05D003791 ORTHO05D004961 4.8e-41 171.8 150 59.3
Eucgr.B03911 Eucalyptus grandis HOM05D003791 ORTHO05D004961 6.2e-41 171.4 161 54.0
Manes.04G011800 Manihot esculenta HOM05D003791 ORTHO05D004961 6.2e-41 171.4 165 55.8
Aqoxy1G01033 Aquilegia oxysepala HOM05D003791 ORTHO05D004961 8.2e-41 171.0 149 57.0
Nitab4.5_0004517g0020 Nicotiana tabacum HOM05D003791 ORTHO05D004961 1.1e-40 170.6 170 52.9
Lalb_Chr03g0027821 Lupinus albus HOM05D003791 ORTHO05D004961 2.4e-40 169.5 174 52.9
TWI79G0622 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 2.4e-40 169.5 170 50.6
Lj3g0020816 Lotus japonicus HOM05D003791 ORTHO05D004961 3.1e-40 169.1 168 53.6
Sabra04G0148600 Salix brachista HOM05D003791 ORTHO05D004961 3.1e-40 169.1 174 51.7
ECA233G0170 Erigeron canadensis HOM05D003791 ORTHO05D004961 4.0e-40 168.7 155 54.8
CAN.G546.67 Capsicum annuum HOM05D003791 ORTHO05D004961 5.3e-40 168.3 173 49.1
Potri.001G212700 Populus trichocarpa HOM05D003791 ORTHO05D004961 9.0e-40 167.5 165 54.5
Ah.01g004870 Amaranthus hybridus HOM05D003791 ORTHO05D004961 1.2e-39 167.2 105 70.5
arahy.Tifrunner.gnm1.ann1.53PLGZ Arachis hypogaea HOM05D003791 ORTHO05D004961 1.2e-39 167.2 157 55.4
AUR62024999 Chenopodium quinoa HOM05D003791 ORTHO05D019539 2.0e-39 166.4 173 57.2
Peaxi162Scf00114g00310 Petunia axillaris HOM05D003791 ORTHO05D004961 2.0e-39 166.4 177 49.2
Solyc11g066560.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 2.0e-39 166.4 145 55.2
arahy.Tifrunner.gnm1.ann1.DSMN0K Arachis hypogaea HOM05D003791 ORTHO05D004961 4.5e-39 165.2 157 54.8
CDE09G0630 Ceratophyllum demersum HOM05D003791 ORTHO05D004961 4.5e-39 165.2 170 50.6
HanXRQChr13g0403561 Helianthus annuus HOM05D003791 ORTHO05D004961 7.6e-39 164.5 152 53.3
Sopen11g026300 Solanum pennellii HOM05D003791 ORTHO05D004961 1.3e-38 163.7 172 48.8
PSO063G7392 Papaver somniferum HOM05D003791 ORTHO05D004961 2.2e-38 162.9 153 54.2
Potri.009G002400 Populus trichocarpa HOM05D003791 ORTHO05D004961 2.2e-38 162.9 171 52.0
CAN.G1432.22 Capsicum annuum HOM05D003791 ORTHO05D004961 3.8e-38 162.2 155 52.9
PSO339G5439 Papaver somniferum HOM05D003791 ORTHO05D004961 1.1e-37 160.6 153 53.6
Lsat_1_v5_gn_6_42140 Lactuca sativa HOM05D003791 ORTHO05D004961 2.5e-37 159.5 170 48.8
SalBow3G1938 Salvia bowleyana HOM05D003791 ORTHO05D004961 2.5e-37 159.5 151 53.6
unitig_22.g5654 Utricularia gibba HOM05D003791 ORTHO05D004961 7.1e-37 157.9 170 50.0
Solyc06g074740.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 9.3e-37 157.5 155 51.0
Sopen06g031150 Solanum pennellii HOM05D003791 ORTHO05D004961 1.6e-36 156.8 170 48.8
arahy.Tifrunner.gnm1.ann1.BYIB55 Arachis hypogaea HOM05D003791 ORTHO05D004961 1.0e-35 154.1 146 54.8
arahy.Tifrunner.gnm1.ann1.EI6HBJ Arachis hypogaea HOM05D003791 ORTHO05D004961 1.0e-35 154.1 146 54.8
THA.LOC104800566 Tarenaya hassleriana HOM05D003791 ORTHO05D004961 1.0e-35 154.1 160 51.2
Thhalv10006697m.g Eutrema salsugineum HOM05D003791 ORTHO05D004961 5.1e-35 151.8 168 49.4
Sp1g06840 Schrenkiella parvula HOM05D003791 ORTHO05D004961 6.7e-35 151.4 168 49.4
Sabra09G0001100 Salix brachista HOM05D003791 ORTHO05D004961 1.9e-34 149.8 171 48.0
Os04g0195000 Oryza sativa ssp. japonica HOM05D003791 ORTHO05D004961 2.5e-34 149.4 163 44.8
Zm00001eb066510 Zea mays HOM05D003791 ORTHO05D004961 2.5e-34 149.4 166 45.8
ATR0580G402 Amborella trichopoda HOM05D003791 ORTHO05D004961 3.3e-34 149.1 175 47.4
Carub.0001s0755 Capsella rubella HOM05D003791 ORTHO05D004961 7.4e-34 147.9 167 47.3
C05p06320 Brassica napus HOM05D003791 ORTHO05D004961 9.7e-34 147.5 166 49.4
A06p05250 Brassica napus HOM05D003791 ORTHO05D004961 1.6e-33 146.7 166 48.8
BraA06t23732Z Brassica rapa HOM05D003791 ORTHO05D004961 1.6e-33 146.7 166 48.8
BolC5t29388H Brassica oleracea HOM05D003791 ORTHO05D004961 2.8e-33 146.0 166 48.8
AL1G18600 Arabidopsis lyrata HOM05D003791 ORTHO05D004961 4.8e-33 145.2 168 47.6
vmacro03244 Vaccinium macrocarpon HOM05D003791 ORTHO05D004961 6.3e-33 144.8 257 36.6
Aa31LG11G12710 Aethionema arabicum HOM05D003791 ORTHO05D004961 1.1e-32 144.1 159 48.4
CARHR008020 Cardamine hirsuta HOM05D003791 ORTHO05D004961 1.8e-32 143.3 177 45.8
AT1G08190 Arabidopsis thaliana HOM05D003791 ORTHO05D004961 4.1e-32 142.1 177 45.2
SEGI_35272 Sequoiadendron giganteum HOM05D003791 ORTHO05D004961 9.0e-32 141.0 160 48.8
SHI06192 Sapria himalayana HOM05D003791 ORTHO05D004961 1.3e-30 137.1 174 45.4
Mapoly0052s0125 Marchantia polymorpha HOM05D003791 ORTHO05D004961 3.0e-27 125.9 172 43.6
AagrBONN_evm.TU.Sc2ySwM_368.1978 Anthoceros agrestis HOM05D003791 ORTHO05D004961 8.8e-27 124.4 154 45.5
Pp3c15_14510 Physcomitrium patens HOM05D003791 ORTHO05D004961 1.1e-24 117.5 161 43.5
DCAR_015496 Daucus carota HOM05D003791 ORTHO05D004961 1.2e-23 114.0 116 49.1
AUR62024027 Chenopodium quinoa HOM05D003791 ORTHO05D000022 2.0e-23 113.2 178 45.5
FAN21G2323 Fragaria x ananassa HOM05D003791 ORTHO05D004961 7.7e-23 111.3 215 35.8
Nitab4.5_0003470g0120 Nicotiana tabacum HOM05D003791 ORTHO05D004961 6.1e-20 101.7 109 50.5
CBR_g63066 Chara braunii HOM05D003791 ORTHO05D000002 5.1e-19 98.6 172 36.6
Lj1C215T10 Lonicera japonica HOM05D003791 ORTHO05D019539 2.8e-17 92.8 91 46.2
Oeu000610.1 Olea europaea HOM05D003791 ORTHO05D004961 2.2e-14 83.2 94 50.0
Lj1A216G25 Lonicera japonica HOM05D003791 ORTHO05D004961 1.9e-13 80.1 48 77.1
Zm00001eb043500 Zea mays HOM05D003791 ORTHO05D004961 4.4e-10 68.9 44 72.7
Zm00001eb057600 Zea mays HOM05D003791 ORTHO05D004961 4.4e-10 68.9 44 72.7
Zm00001eb291520 Zea mays HOM05D003791 ORTHO05D004961 4.4e-10 68.9 44 72.7
Zm00001eb364150 Zea mays HOM05D003791 ORTHO05D004961 4.4e-10 68.9 44 72.7
SMO266G0036 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 9.7e-10 67.8 130 31.5
Ah.03g145400 Amaranthus hybridus HOM05D006463 ORTHO05D002997 2.8e-09 66.2 48 70.8
Ah.09g225330 Amaranthus hybridus HOM05D006463 ORTHO05D002997 2.8e-09 66.2 48 72.9
Ah.05g176190 Amaranthus hybridus HOM05D006463 ORTHO05D002997 3.7e-09 65.9 48 70.8
SMO118G0273 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 1.4e-08 63.9 48 56.2
arahy.Tifrunner.gnm1.ann1.5PQ0NB Arachis hypogaea HOM05D003791 ORTHO05D004961 1.6e-07 60.5 48 64.6
PRCOL_00006500 Prasinoderma coloniale HOM05D003791 ORTHO05D004961 5.9e-07 58.5 144 27.8
AUR62040426 Chenopodium quinoa HOM05D003791 ORTHO05D004961 3.8e-06 55.8 27 92.6


User provided reference genes

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