Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.04g161760 Amaranthus hybridus HOM05D004763 ORTHO05D007492 0.0e+00 1206.8 620 100.0
AUR62019250 Chenopodium quinoa HOM05D004763 ORTHO05D007492 1.3e-308 1062.4 673 82.5
EL10Ac4g10318 Beta vulgaris HOM05D004763 ORTHO05D007492 1.3e-303 1045.8 660 82.4
Hund22081 Selenicereus undatus HOM05D004763 ORTHO05D007492 7.4e-299 1030.0 673 79.8
Sc09g0000480 Simmondsia chinensis HOM05D004763 ORTHO05D007492 1.7e-295 1018.8 675 79.0
GSVIVG01025336001 Vitis vinifera HOM05D004763 ORTHO05D007492 6.7e-292 1006.9 674 77.7
Gohir.A13G215400 Gossypium hirsutum HOM05D004763 ORTHO05D007492 8.8e-292 1006.5 666 78.1
Gorai.013G250000 Gossypium raimondii HOM05D004763 ORTHO05D007492 7.4e-291 1003.4 666 77.8
Gohir.D13G219100 Gossypium hirsutum HOM05D004763 ORTHO05D007492 1.3e-290 1002.7 666 77.6
Thecc.09G223100 Theobroma cacao HOM05D004763 ORTHO05D007492 8.2e-290 1000.0 668 77.8
TAR623G1126 Trochodendron aralioides HOM05D004763 ORTHO05D007492 8.2e-290 1000.0 674 77.0
Nn7g36058 Nelumbo nucifera HOM05D004763 ORTHO05D007492 1.1e-289 999.6 673 77.4
CSS0044360 Camellia sinensis var. sinensis HOM05D004763 ORTHO05D007492 2.4e-289 998.4 668 77.8
Hma1.2p1_1169F.1_g263300 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 4.1e-289 997.7 673 76.7
QL01p006243 Quercus lobata HOM05D004763 ORTHO05D007492 2.9e-287 991.5 675 76.4
Manes.14G014500 Manihot esculenta HOM05D004763 ORTHO05D007492 3.8e-287 991.1 666 77.2
MELO3C014639.2 Cucumis melo HOM05D004763 ORTHO05D007492 8.5e-287 989.9 671 76.6
Dinv36304 Davidia involucrata HOM05D004763 ORTHO05D007492 1.4e-286 989.2 674 76.4
TWI34G0672 Tripterygium wilfordii HOM05D004763 ORTHO05D007492 2.5e-286 988.4 674 76.6
CsaV3_4G023800 Cucumis sativus L. HOM05D004763 ORTHO05D007492 7.2e-286 986.9 671 76.3
HanXRQChr14g0451781 Helianthus annuus HOM05D004763 ORTHO05D007492 1.4e-284 982.6 677 76.1
PSO339G3791 Papaver somniferum HOM05D004763 ORTHO05D007492 2.3e-284 981.9 674 76.0
CiPaw.14G125100 Carya illinoinensis HOM05D004763 ORTHO05D007492 3.0e-284 981.5 672 75.0
Lalb_Chr14g0372291 Lupinus albus HOM05D004763 ORTHO05D007492 1.5e-283 979.2 675 76.1
Cc01_g04070 Coffea canephora HOM05D004763 ORTHO05D007492 5.7e-283 977.2 674 75.4
Aqoxy1G00185 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 2.2e-282 975.3 672 74.7
CANSAT54G1729 Cannabis sativa HOM05D004763 ORTHO05D007492 2.2e-282 975.3 679 75.1
Potri.003G211000 Populus trichocarpa HOM05D004763 ORTHO05D007492 2.2e-282 975.3 671 75.4
arahy.Tifrunner.gnm1.ann1.VYK1P0 Arachis hypogaea HOM05D004763 ORTHO05D007492 4.8e-282 974.2 672 75.1
arahy.Tifrunner.gnm1.ann1.P0K6XU Arachis hypogaea HOM05D004763 ORTHO05D007492 6.3e-282 973.8 670 75.4
Medtr2g098510 Medicago truncatula HOM05D004763 ORTHO05D007492 1.4e-281 972.6 671 75.6
arahy.Tifrunner.gnm1.ann1.GN3GFY Arachis hypogaea HOM05D004763 ORTHO05D007492 1.8e-281 972.2 672 75.0
Cpa.g.sc84.111 Carica papaya HOM05D004763 ORTHO05D007492 4.1e-281 971.1 702 73.4
Glyma.13G342900 Glycine max HOM05D004763 ORTHO05D007492 5.3e-281 970.7 674 75.1
Sed0013957 Sechium edule HOM05D004763 ORTHO05D007492 2.0e-280 968.8 671 74.8
ECA238G4453 Erigeron canadensis HOM05D004763 ORTHO05D007492 3.5e-280 968.0 677 75.5
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 1.7e-279 965.7 670 74.6
Psat5g288480 Pisum sativum HOM05D004763 ORTHO05D007492 2.9e-279 964.9 669 75.6
Phvul.005G150500 Phaseolus vulgaris HOM05D004763 ORTHO05D007492 8.5e-279 963.4 669 75.3
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 1.9e-278 962.2 662 75.5
Sopen01g009200 Solanum pennellii HOM05D004763 ORTHO05D007492 3.2e-278 961.4 674 73.7
THA.LOC104816912 Tarenaya hassleriana HOM05D004763 ORTHO05D007492 4.2e-278 961.1 659 75.4
Eucgr.B03662 Eucalyptus grandis HOM05D004763 ORTHO05D007492 1.6e-277 959.1 669 74.1
Ciclev10014511m.g Citrus clementina HOM05D004763 ORTHO05D007492 2.1e-277 958.7 661 75.3
Solyc01g014490.4 Solanum lycopersicum HOM05D004763 ORTHO05D007492 2.1e-277 958.7 674 73.4
Migut.D00558 Erythranthe guttata HOM05D004763 ORTHO05D007492 2.7e-277 958.4 675 73.3
arahy.Tifrunner.gnm1.ann1.X75IXN Arachis hypogaea HOM05D004763 ORTHO05D007492 4.7e-277 957.6 710 70.8
COL.COLO4_09893 Corchorus olitorius HOM05D004763 ORTHO05D007492 1.4e-276 956.1 664 75.0
Peaxi162Scf00773g00119 Petunia axillaris HOM05D004763 ORTHO05D007492 3.0e-276 954.9 682 73.5
Duzib150G1218 Durio zibethinus HOM05D004763 ORTHO05D007492 7.5e-275 950.3 689 73.6
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 1.3e-274 949.5 644 76.2
BcaC05g28282 Brassica carinata HOM05D004763 ORTHO05D007492 1.7e-274 949.1 665 74.0
Sabra03G0153800 Salix brachista HOM05D004763 ORTHO05D007492 2.2e-274 948.7 647 75.6
Sabra03G0156000 Salix brachista HOM05D004763 ORTHO05D007492 2.2e-274 948.7 647 75.6
C05p43300 Brassica napus HOM05D004763 ORTHO05D007492 2.8e-274 948.3 665 73.8
PGR102G0325 Punica granatum HOM05D004763 ORTHO05D007492 4.8e-274 947.6 671 74.7
RcHm_v2.0_Chr5g0078101 Rosa chinensis HOM05D004763 ORTHO05D007492 4.1e-273 944.5 662 73.9
Lj3g0020649 Lotus japonicus HOM05D004763 ORTHO05D007492 7.0e-273 943.7 669 73.4
AL3G34700 Arabidopsis lyrata HOM05D004763 ORTHO05D007492 9.1e-273 943.3 672 73.7
FvH4_3g43550 Fragaria vesca HOM05D004763 ORTHO05D007492 9.1e-273 943.3 662 73.7
AT3G20780 Arabidopsis thaliana HOM05D004763 ORTHO05D007492 1.2e-272 943.0 660 74.4
Sp3g18800 Schrenkiella parvula HOM05D004763 ORTHO05D007492 2.0e-272 942.2 672 73.4
BcaB06g26148 Brassica carinata HOM05D004763 ORTHO05D007492 5.9e-272 940.6 669 73.4
A05p28000 Brassica napus HOM05D004763 ORTHO05D007492 3.8e-271 937.9 679 72.5
BolC5t33062H Brassica oleracea HOM05D004763 ORTHO05D007492 6.5e-271 937.2 693 71.1
Thhalv10020214m.g Eutrema salsugineum HOM05D004763 ORTHO05D007492 6.5e-271 937.2 672 73.5
Carub.0003s2074 Capsella rubella HOM05D004763 ORTHO05D007492 1.9e-270 935.6 672 72.8
FAN16G3272 Fragaria x ananassa HOM05D004763 ORTHO05D007492 2.5e-270 935.3 672 72.5
BraA05t21683Z Brassica rapa HOM05D004763 ORTHO05D007492 3.6e-269 931.4 687 71.6
Nitab4.5_0006575g0020 Nicotiana tabacum HOM05D004763 ORTHO05D007492 1.0e-268 929.9 691 71.8
Prupe.6G018600 Prunus persica HOM05D004763 ORTHO05D007492 1.0e-268 929.9 691 71.3
ATR0605G091 Amborella trichopoda HOM05D004763 ORTHO05D007492 1.8e-268 929.1 671 72.0
MD03G1021100 Malus domestica HOM05D004763 ORTHO05D007492 2.6e-267 925.2 675 72.0
HPP92_020536 Vanilla planifolia HOM05D004763 ORTHO05D007492 3.4e-267 924.9 671 70.8
Nitab4.5_0003069g0050 Nicotiana tabacum HOM05D004763 ORTHO05D007492 7.0e-265 917.1 678 72.4
Os09g0279600 Oryza sativa ssp. japonica HOM05D004763 ORTHO05D007492 5.0e-263 911.0 645 71.5
SGA_v2.0_scaffold1G00797 Striga asiatica HOM05D004763 ORTHO05D007492 3.0e-260 901.7 722 67.9
Lj4g0010878 Lotus japonicus HOM05D004763 ORTHO05D007492 6.8e-260 900.6 626 74.6
Rhsim01G0189300 Rhododendron simsii HOM05D004763 ORTHO05D007492 2.6e-259 898.7 758 66.0
CDE04G0998 Ceratophyllum demersum HOM05D004763 ORTHO05D007492 4.1e-257 891.3 641 71.8
Lsat_1_v5_gn_2_101121 Lactuca sativa HOM05D004763 ORTHO05D007492 6.6e-255 884.0 698 69.6
Aa31LG8G7590 Aethionema arabicum HOM05D004763 ORTHO05D007492 7.0e-249 864.0 645 69.9
Aqoxy381s001 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 2.0e-248 862.4 633 71.9
Actinidia39377 Actinidia chinensis HOM05D004763 ORTHO05D007492 1.2e-243 846.7 675 68.0
Pp3c22_12720 Physcomitrium patens HOM05D004763 ORTHO05D007492 5.1e-239 831.2 658 65.2
Atru.chr3.2503 Acer truncatum HOM05D004763 ORTHO05D007492 6.8e-236 820.8 582 72.5
SMO116G0144 Selaginella moellendorffii HOM05D004763 ORTHO05D007492 1.5e-235 819.7 648 65.6
CARHR096610 Cardamine hirsuta HOM05D004763 ORTHO05D007492 1.9e-233 812.8 572 73.4
AagrBONN_evm.TU.Sc2ySwM_344.3405 Anthoceros agrestis HOM05D004763 ORTHO05D007492 9.2e-233 810.4 645 65.1
Ca_01270_v3 Cicer arietinum L. HOM05D004763 ORTHO05D007492 6.6e-231 804.3 597 71.0
Mapoly0042s0060 Marchantia polymorpha HOM05D004763 ORTHO05D007492 1.5e-230 803.1 665 62.6
DCAR_024396 Daucus carota HOM05D004763 ORTHO05D007492 3.2e-225 785.4 675 64.3
CBR_g31022 Chara braunii HOM05D004763 ORTHO05D007492 5.6e-222 774.6 661 61.1
Hma1.2p1_1169F.1_g263310 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 5.3e-220 768.1 509 75.6
FAN21G2003 Fragaria x ananassa HOM05D004763 ORTHO05D007492 4.0e-212 741.9 635 64.6
FAN11G2145 Fragaria x ananassa HOM05D004763 ORTHO05D007492 7.9e-208 727.6 699 59.4
FAN11G0713 Fragaria x ananassa HOM05D004763 ORTHO05D007492 4.0e-204 715.3 699 58.2
Potri.T085401 Populus trichocarpa HOM05D004763 ORTHO05D007492 2.6e-187 659.4 443 76.7
Zm00001eb308780 Zea mays HOM05D004763 ORTHO05D007492 1.1e-177 627.5 462 67.5
Cre01.g019750 Chlamydomonas reinhardtii HOM05D004763 ORTHO05D007492 1.2e-171 607.4 677 49.6
MBI01_g15753_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D007492 7.7e-171 604.7 368 84.0
ClCG02G023620 Citrullus lanatus HOM05D004763 ORTHO05D007492 2.1e-168 596.7 374 82.4
CAN.G646.1 Capsicum annuum HOM05D004763 ORTHO05D007492 2.6e-166 589.7 366 82.2
PGSC0003DMG401029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 2.4e-164 583.2 387 78.3
Lsat_1_v5_gn_1_127001 Lactuca sativa HOM05D004763 ORTHO05D007492 1.2e-155 554.3 534 58.2
SEGI_32015 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 1.6e-147 527.3 326 79.4
MCO09G243 Micromonas commoda HOM05D004763 ORTHO05D007492 6.6e-146 521.9 664 45.6
PRCOL_00005940 Prasinoderma coloniale HOM05D004763 ORTHO05D007492 7.3e-145 518.5 675 45.5
Lsat_1_v5_gn_1_127121 Lactuca sativa HOM05D004763 ORTHO05D007492 9.8e-142 508.1 567 54.5
Lj1A366T12 Lonicera japonica HOM05D004763 ORTHO05D007492 4.6e-139 499.2 367 72.2
Lju1319A4T15 Lonicera japonica HOM05D004763 ORTHO05D007492 7.6e-110 402.1 306 68.6
CAN.G442.1 Capsicum annuum HOM05D004763 ORTHO05D007492 1.4e-100 371.3 308 63.0
PGSC0003DMG402029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 1.2e-99 368.2 307 63.8
Lsat_1_v5_gn_1_126981 Lactuca sativa HOM05D004763 ORTHO05D007492 1.4e-84 318.2 466 45.5
SEGI_39045 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 4.3e-81 306.6 216 71.3
Lj1C366G5 Lonicera japonica HOM05D004763 ORTHO05D007492 5.7e-81 306.2 298 57.7
Actinidia06319 Actinidia chinensis HOM05D004763 ORTHO05D007492 4.8e-80 303.1 216 71.8
Eucgr.B03660 Eucalyptus grandis HOM05D004763 ORTHO05D007492 1.5e-65 255.0 176 72.7
Lju1319C4G3 Lonicera japonica HOM05D004763 ORTHO05D014896 9.1e-55 219.2 233 57.5
TPR.G29743 Trifolium pratense HOM05D004763 ORTHO05D007492 1.2e-51 208.8 216 56.0
Oeu036968.1 Olea europaea HOM05D004763 ORTHO05D007492 1.6e-51 208.4 104 90.4
TPR.G29742 Trifolium pratense HOM05D004763 ORTHO05D007492 7.5e-49 199.5 246 50.4
Lsat_1_v5_gn_1_127201 Lactuca sativa HOM05D004763 ORTHO05D007492 2.0e-41 174.9 400 34.5
MBI09_g40619_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D019264 4.0e-34 150.6 87 83.9
MBI04_g09599_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 5.2e-34 150.2 87 83.9
Lsat_1_v5_gn_1_126941 Lactuca sativa HOM05D004763 ORTHO05D007492 6.8e-34 149.8 178 47.2
MBI02_g24793_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 4.4e-33 147.1 87 82.8
Ca_01269_v3 Cicer arietinum L. HOM05D000073 ORTHO05D000033 1.1e-31 142.5 116 72.4
Thecc.03G073800 Theobroma cacao HOM05D004763 ORTHO05D019264 7.0e-31 139.8 107 66.4
PGSC0003DMG400012096 Solanum tuberosum HOM05D004763 ORTHO05D014896 9.5e-28 129.4 86 77.9
Aa31LG8G7550 Aethionema arabicum HOM05D004763 ORTHO05D007492 1.6e-27 128.6 465 31.0
PGSC0003DMG401017076 Solanum tuberosum HOM05D004763 ORTHO05D026177 1.7e-24 118.6 113 54.9
Lsat_1_v5_gn_1_127161 Lactuca sativa HOM05D004763 ORTHO05D007492 1.1e-23 115.9 146 47.9
arahy.Tifrunner.gnm1.ann1.50I1V9 Arachis hypogaea HOM05D004763 ORTHO05D014896 8.6e-21 106.3 68 82.4
arahy.Tifrunner.gnm1.ann1.F7UR4V Arachis hypogaea HOM05D004763 ORTHO05D014896 8.6e-21 106.3 68 82.4
arahy.Tifrunner.gnm1.ann1.G1IAFF Arachis hypogaea HOM05D004763 ORTHO05D014896 4.3e-20 104.0 82 69.5
Lju1319A4T14 Lonicera japonica HOM05D004763 ORTHO05D019264 2.8e-19 101.3 54 88.9
Sopen04g015550 Solanum pennellii HOM05D000004 ORTHO05D000002 1.3e-16 92.4 91 63.7
arahy.Tifrunner.gnm1.ann1.65KXHR Arachis hypogaea HOM05D004763 ORTHO05D014896 3.2e-15 87.8 49 89.8
Lsat_1_v5_gn_1_125620 Lactuca sativa HOM05D004763 ORTHO05D007492 3.2e-15 87.8 201 35.3
TWI60G1170 Tripterygium wilfordii HOM05D004763 ORTHO05D014896 7.0e-15 86.7 49 89.8
PGSC0003DMG400026817 Solanum tuberosum HOM05D004763 ORTHO05D026177 2.0e-14 85.1 81 61.7
arahy.Tifrunner.gnm1.ann1.YT3XVJ Arachis hypogaea HOM05D012186 ORTHO05D009594 7.8e-14 83.2 92 55.4
Lsat_1_v5_gn_1_126960 Lactuca sativa HOM05D004763 ORTHO05D012314 1.2e-11 75.9 66 51.5
Solyc11g028310.3 Solanum lycopersicum HOM05D004763 ORTHO05D026177 1.8e-10 72.0 63 65.1
PGSC0003DMG400019106 Solanum tuberosum HOM05D004763 ORTHO05D007492 6.8e-10 70.1 37 86.5
Aa31LG8G7540 Aethionema arabicum HOM05D004763 ORTHO05D007492 2.0e-09 68.6 67 53.7
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 4.9e-08 63.9 44 61.4
Solyc12g036030.1 Solanum lycopersicum HOM05D004763 ORTHO05D026177 8.3e-08 63.2 104 42.3
Solyc11g028340.3 Solanum lycopersicum HOM05D004763 ORTHO05D019264 1.4e-07 62.4 46 58.7
Lsat_1_v5_gn_8_146221 Lactuca sativa HOM05D004763 ORTHO05D014896 7.1e-07 60.1 33 90.9
arahy.Tifrunner.gnm1.ann1.NZV0HQ Arachis hypogaea HOM05D004763 ORTHO05D014896 4.6e-06 57.4 33 90.9
Solyc11g028350.1 Solanum lycopersicum HOM05D004763 ORTHO05D019264 4.6e-06 57.4 40 62.5


User provided reference genes

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