Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g129050 Amaranthus hybridus HOM05D006371 ORTHO05D008309 0.0e+00 1741.5 883 100.0
EL10Ac6g13348 Beta vulgaris HOM05D006371 ORTHO05D008309 0.0e+00 1283.9 897 75.7
AUR62039632 Chenopodium quinoa HOM05D006371 ORTHO05D008309 0.0e+00 1239.9 874 75.1
AUR62040011 Chenopodium quinoa HOM05D006371 ORTHO05D008309 0.0e+00 1219.5 820 78.5
Sc07g0001260 Simmondsia chinensis HOM05D006371 ORTHO05D008309 2.0e-281 972.6 868 62.9
Hund03659 Selenicereus undatus HOM05D006371 ORTHO05D008309 3.2e-279 965.3 886 62.0
Dinv40160 Davidia involucrata HOM05D006371 ORTHO05D008309 1.1e-274 950.3 893 61.4
Actinidia02362 Actinidia chinensis HOM05D006371 ORTHO05D008309 5.8e-265 917.9 890 58.9
Ciclev10014166m.g Citrus clementina HOM05D006371 ORTHO05D008309 5.8e-265 917.9 797 63.7
CSS0032100 Camellia sinensis var. sinensis HOM05D006371 ORTHO05D008309 2.9e-264 915.6 806 62.8
CiPaw.03G283700 Carya illinoinensis HOM05D006371 ORTHO05D008309 6.5e-264 914.4 843 61.4
Cfa014202 Carpinus fangiana HOM05D006371 ORTHO05D008309 4.2e-263 911.8 764 64.9
Nn1g07560 Nelumbo nucifera HOM05D006371 ORTHO05D008309 7.9e-262 907.5 821 62.0
QL04p067039 Quercus lobata HOM05D006371 ORTHO05D008309 9.7e-260 900.6 754 65.9
Gohir.A11G148000 Gossypium hirsutum HOM05D006371 ORTHO05D008309 2.8e-259 899.0 750 66.4
CANSAT64G2089 Cannabis sativa HOM05D006371 ORTHO05D008309 8.2e-259 897.5 824 61.9
Gorai.007G165100 Gossypium raimondii HOM05D006371 ORTHO05D008309 1.4e-258 896.7 829 62.4
RcHm_v2.0_Chr2g0155641 Rosa chinensis HOM05D006371 ORTHO05D008309 1.4e-258 896.7 803 63.1
FvH4_6g40410 Fragaria vesca HOM05D006371 ORTHO05D008309 3.1e-258 895.6 759 65.1
FAN14G0004 Fragaria x ananassa HOM05D006371 ORTHO05D008309 4.1e-258 895.2 757 65.7
MD09G1130200 Malus domestica HOM05D006371 ORTHO05D008309 4.1e-258 895.2 773 63.9
Cc07_g11500 Coffea canephora HOM05D006371 ORTHO05D008309 1.5e-257 893.3 832 60.7
FAN05G5438 Fragaria x ananassa HOM05D006371 ORTHO05D008309 2.0e-257 892.9 781 63.6
Gohir.D11G154800 Gossypium hirsutum HOM05D006371 ORTHO05D008309 2.0e-257 892.9 829 62.0
Migut.D00896 Erythranthe guttata HOM05D006371 ORTHO05D008309 3.8e-256 888.6 879 57.9
FAN02G4613 Fragaria x ananassa HOM05D006371 ORTHO05D008309 8.5e-256 887.5 781 63.4
Eucgr.A01367 Eucalyptus grandis HOM05D006371 ORTHO05D008309 1.9e-255 886.3 792 62.2
FAN09G0519 Fragaria x ananassa HOM05D006371 ORTHO05D008309 2.5e-255 885.9 781 63.3
Duzib211G0069 Durio zibethinus HOM05D006371 ORTHO05D008309 3.2e-255 885.6 901 57.9
Manes.12G064500 Manihot esculenta HOM05D006371 ORTHO05D008309 3.2e-255 885.6 757 64.5
TWI36G0955 Tripterygium wilfordii HOM05D006371 ORTHO05D008309 3.2e-255 885.6 761 64.9
Prupe.3G194900 Prunus persica HOM05D006371 ORTHO05D008309 5.5e-255 884.8 790 63.0
PGR031G1410 Punica granatum HOM05D006371 ORTHO05D008309 1.2e-254 883.6 760 64.5
MELO3C024185.2 Cucumis melo HOM05D006371 ORTHO05D008309 1.8e-253 879.8 803 62.3
PSO675G4792 Papaver somniferum HOM05D006371 ORTHO05D008309 1.5e-252 876.7 762 64.0
GSVIVG01030124001 Vitis vinifera HOM05D006371 ORTHO05D008309 2.0e-252 876.3 805 62.0
PSO541G0072 Papaver somniferum HOM05D006371 ORTHO05D008309 2.5e-252 875.9 762 64.4
Lalb_Chr04g0252451 Lupinus albus HOM05D006371 ORTHO05D008309 5.7e-252 874.8 825 61.1
Duzib133G1082 Durio zibethinus HOM05D006371 ORTHO05D008309 9.7e-252 874.0 802 61.6
arahy.Tifrunner.gnm1.ann1.BM1T67 Arachis hypogaea HOM05D006371 ORTHO05D008309 2.8e-251 872.5 757 63.9
arahy.Tifrunner.gnm1.ann1.YIC3VW Arachis hypogaea HOM05D006371 ORTHO05D008309 3.7e-251 872.1 764 64.0
Sabra14G0129800 Salix brachista HOM05D006371 ORTHO05D008309 3.7e-251 872.1 756 64.3
Glyma.14G190200 Glycine max HOM05D006371 ORTHO05D008309 6.3e-251 871.3 830 60.0
SalBow7G3887 Salvia bowleyana HOM05D006371 ORTHO05D008309 6.3e-251 871.3 837 59.6
Sed0018275 Sechium edule HOM05D006371 ORTHO05D008309 1.1e-250 870.5 792 62.1
Potri.014G170300 Populus trichocarpa HOM05D006371 ORTHO05D008309 3.1e-250 869.0 756 64.0
Dinv08538 Davidia involucrata HOM05D006371 ORTHO05D008309 5.3e-250 868.2 704 66.6
CsaV3_2G010080 Cucumis sativus L. HOM05D006371 ORTHO05D008309 2.6e-249 865.9 798 61.4
Hund03661 Selenicereus undatus HOM05D006371 ORTHO05D008309 2.6e-249 865.9 910 57.6
MSTRG.10896 Avicennia marina HOM05D006371 ORTHO05D008309 3.4e-249 865.5 736 64.4
Glyma.02G223400 Glycine max HOM05D006371 ORTHO05D008309 3.4e-249 865.5 825 61.0
LjContig00155g0006571 Lotus japonicus HOM05D006371 ORTHO05D008309 3.8e-248 862.1 763 62.8
Aqoxy3G02224 Aquilegia oxysepala HOM05D006371 ORTHO05D008309 1.6e-246 856.7 800 59.2
THA.LOC104808834 Tarenaya hassleriana HOM05D006371 ORTHO05D008309 2.1e-246 856.3 837 59.7
CARHR102110 Cardamine hirsuta HOM05D006371 ORTHO05D008309 5.1e-245 851.7 742 64.2
Sp3g23150 Schrenkiella parvula HOM05D006371 ORTHO05D008309 7.4e-244 847.8 756 62.3
Carub.0003s2599 Capsella rubella HOM05D006371 ORTHO05D008309 3.1e-242 842.4 743 63.1
COL.COLO4_19652 Corchorus olitorius HOM05D006371 ORTHO05D008309 4.1e-242 842.0 870 56.2
AT2G04270 Arabidopsis thaliana HOM05D006371 ORTHO05D008309 1.5e-241 840.1 702 65.8
Thhalv10002385m.g Eutrema salsugineum HOM05D006371 ORTHO05D008309 2.6e-241 839.3 806 59.2
AL3G41970 Arabidopsis lyrata HOM05D006371 ORTHO05D008309 5.9e-241 838.2 801 59.6
Solyc02g083140.3 Solanum lycopersicum HOM05D006371 ORTHO05D008309 1.0e-240 837.4 872 55.6
BcaB06g26772 Brassica carinata HOM05D006371 ORTHO05D008309 1.7e-240 836.6 761 62.0
A07p06760 Brassica napus HOM05D006371 ORTHO05D008309 1.1e-239 833.9 749 63.4
CAN.G890.8 Capsicum annuum HOM05D006371 ORTHO05D008309 1.1e-239 833.9 682 66.0
Aa31sc575G10 Aethionema arabicum HOM05D006371 ORTHO05D008309 2.5e-239 832.8 754 61.3
Sopen02g027900 Solanum pennellii HOM05D006371 ORTHO05D008309 5.5e-239 831.6 871 55.7
PGSC0003DMG400001545 Solanum tuberosum HOM05D006371 ORTHO05D008309 1.2e-238 830.5 871 55.9
BcaC06g35860 Brassica carinata HOM05D006371 ORTHO05D008309 2.1e-238 829.7 809 59.6
BraA07t28469Z Brassica rapa HOM05D006371 ORTHO05D008309 1.0e-237 827.4 787 60.6
Lj4C228G6 Lonicera japonica HOM05D006371 ORTHO05D008309 1.0e-237 827.4 872 55.8
BolC7t41483H Brassica oleracea HOM05D006371 ORTHO05D008309 5.2e-237 825.1 810 59.5
TAR627G0565 Trochodendron aralioides HOM05D006371 ORTHO05D008309 6.7e-237 824.7 715 64.9
C07p10340 Brassica napus HOM05D006371 ORTHO05D008309 2.0e-236 823.2 810 59.4
Peaxi162Scf00300g00515 Petunia axillaris HOM05D006371 ORTHO05D008309 9.7e-236 820.8 940 52.8
TPR.G13852 Trifolium pratense HOM05D006371 ORTHO05D008309 4.8e-235 818.5 798 56.9
Ca_05557_v3 Cicer arietinum L. HOM05D006371 ORTHO05D008309 2.0e-233 813.1 728 61.5
ECA232G0409 Erigeron canadensis HOM05D006371 ORTHO05D008309 4.5e-233 812.0 832 55.3
HanXRQChr09g0256951 Helianthus annuus HOM05D006371 ORTHO05D008309 7.7e-233 811.2 842 56.3
Thecc.01G199300 Theobroma cacao HOM05D006371 ORTHO05D008309 2.5e-231 806.2 800 58.5
ATR0751G221 Amborella trichopoda HOM05D006371 ORTHO05D008309 9.4e-231 804.3 829 56.8
ECA238G3451 Erigeron canadensis HOM05D006371 ORTHO05D008309 6.8e-229 798.1 845 55.3
Lsat_1_v5_gn_4_142580 Lactuca sativa HOM05D006371 ORTHO05D008309 1.1e-226 790.8 864 53.9
Nitab4.5_0005413g0050 Nicotiana tabacum HOM05D006371 ORTHO05D008309 1.2e-225 787.3 873 54.1
Psat2g060760 Pisum sativum HOM05D006371 ORTHO05D008309 7.2e-223 778.1 748 58.8
HPP92_003032 Vanilla planifolia HOM05D006371 ORTHO05D008309 2.7e-222 776.2 779 57.1
Os08g0323600 Oryza sativa ssp. japonica HOM05D006371 ORTHO05D008309 2.8e-219 766.1 722 59.3
Zm00001eb038720 Zea mays HOM05D006371 ORTHO05D008309 1.0e-216 757.7 686 61.2
Medtr5g069430 Medicago truncatula HOM05D006371 ORTHO05D008309 5.5e-215 751.9 763 57.1
Cpa.g.sc136.51 Carica papaya HOM05D006371 ORTHO05D008309 5.7e-212 741.9 553 71.6
SGA_v2.0_scaffold68G22808 Striga asiatica HOM05D006371 ORTHO05D008309 1.5e-207 727.2 854 52.5
Oeu049652.2 Olea europaea HOM05D006371 ORTHO05D008309 2.6e-204 716.5 887 50.1
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 8.0e-198 694.9 715 56.5
MBI15_g38530_MAGBIO Magnolia biondii HOM05D006371 ORTHO05D008309 1.2e-177 627.9 575 61.9
ClCG02G003000 Citrullus lanatus HOM05D006371 ORTHO05D008309 1.2e-169 601.3 624 57.5
Phvul.008G190000 Phaseolus vulgaris HOM05D006371 ORTHO05D008309 1.1e-167 594.7 581 59.0
Hma1.2p1_0315F.1_g122770 Hydrangea macrophylla HOM05D006371 ORTHO05D008309 5.6e-167 592.4 669 53.2
Mapoly0111s0056 Marchantia polymorpha HOM05D006371 ORTHO05D008309 3.8e-163 579.7 730 46.4
CDE02G2282 Ceratophyllum demersum HOM05D006371 ORTHO05D008309 2.3e-160 570.5 563 58.1
vmacro20507 Vaccinium macrocarpon HOM05D006371 ORTHO05D008309 4.8e-158 562.8 928 42.5
DCAR_023137 Daucus carota HOM05D006371 ORTHO05D008309 6.2e-158 562.4 653 52.4
Nitab4.5_0023804g0010 Nicotiana tabacum HOM05D006371 ORTHO05D008309 2.3e-152 543.9 662 50.8
Pp3c4_14910 Physcomitrium patens HOM05D006371 ORTHO05D008309 1.4e-146 524.6 693 44.2
Rhsim10G0203500 Rhododendron simsii HOM05D006371 ORTHO05D008309 1.5e-140 504.6 946 39.5
AagrBONN_evm.TU.Sc2ySwM_368.983 Anthoceros agrestis HOM05D006371 ORTHO05D008309 1.3e-134 485.0 689 43.7
Atru.chr6.3429 Acer truncatum HOM05D006371 ORTHO05D008309 1.8e-133 481.1 531 55.2
SMO117G0275 Selaginella moellendorffii HOM05D006371 ORTHO05D008309 3.6e-129 466.8 549 49.0
Haze_12588 Corylus avellana HOM05D006371 ORTHO05D008309 7.7e-124 449.1 464 55.8
Haze_12589 Corylus avellana HOM05D006371 ORTHO05D008309 1.5e-90 338.6 418 50.5
AUR62026198 Chenopodium quinoa HOM05D006371 ORTHO05D008309 1.3e-86 325.5 277 66.8
SEGI_21719 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 9.6e-66 256.1 217 60.4
Ca_28887_v3 Cicer arietinum L. HOM05D006371 ORTHO05D008309 5.1e-51 207.2 413 32.2
MD17G1105600 Malus domestica HOM05D006371 ORTHO05D008309 1.9e-45 188.7 197 57.4
MCO12G287 Micromonas commoda HOM05D006371 ORTHO05D008309 2.4e-40 171.8 353 32.6
CBR_g28919 Chara braunii HOM05D006371 ORTHO05D000048 2.6e-23 115.2 114 51.8
SEGI_30134 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 1.6e-20 105.9 275 33.8
SEGI_19700 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 1.4e-19 102.8 74 68.9
AUR62026199 Chenopodium quinoa HOM05D000691 ORTHO05D000378 3.3e-18 98.2 162 42.0
CBR_g28910 Chara braunii HOM05D000019 ORTHO05D000048 3.1e-16 91.7 110 47.3
MD17G1105400 Malus domestica HOM05D006371 ORTHO05D008309 1.5e-15 89.4 86 55.8
CBR_g28922 Chara braunii HOM05D000019 ORTHO05D000048 3.4e-15 88.2 247 30.4
MD17G1105500 Malus domestica HOM05D006371 ORTHO05D008309 1.5e-10 72.8 41 90.2
AUR62026201 Chenopodium quinoa HOM05D006371 ORTHO05D008309 2.2e-09 68.9 38 92.1


User provided reference genes

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