Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g020810 Amaranthus hybridus HOM05D005526 ORTHO05D006802 1.3e-227 792.7 415 100.0
AUR62011560 Chenopodium quinoa HOM05D005526 ORTHO05D006802 1.2e-151 540.4 422 73.0
AUR62016379 Chenopodium quinoa HOM05D005526 ORTHO05D006802 4.5e-151 538.5 422 71.8
EL10Ac9g21940 Beta vulgaris HOM05D005526 ORTHO05D006802 2.9e-150 535.8 423 71.6
Hund06580 Selenicereus undatus HOM05D005526 ORTHO05D006802 2.3e-142 509.6 430 68.6
Sc10g0005720 Simmondsia chinensis HOM05D005526 ORTHO05D006802 6.4e-129 464.9 422 64.7
Dinv38097 Davidia involucrata HOM05D005526 ORTHO05D006802 7.3e-125 451.4 450 59.3
Ciclev10025661m.g Citrus clementina HOM05D005526 ORTHO05D006802 1.3e-121 440.7 446 58.7
Atru.chr1.3093 Acer truncatum HOM05D005526 ORTHO05D006802 6.4e-121 438.3 447 58.6
TAR383G0281 Trochodendron aralioides HOM05D005526 ORTHO05D006802 2.1e-119 433.3 443 56.7
Actinidia08810 Actinidia chinensis HOM05D005526 ORTHO05D006802 6.0e-119 431.8 445 57.3
Cfa002011 Carpinus fangiana HOM05D005526 ORTHO05D006802 1.7e-118 430.3 449 58.4
CSS0037293 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 6.6e-118 428.3 446 57.2
Gohir.D06G117200 Gossypium hirsutum HOM05D005526 ORTHO05D006802 8.6e-118 427.9 443 57.1
MD09G1221000 Malus domestica HOM05D005526 ORTHO05D006802 1.5e-117 427.2 455 57.4
Eucgr.J03045 Eucalyptus grandis HOM05D005526 ORTHO05D006802 1.9e-117 426.8 446 56.3
Nn2g11952 Nelumbo nucifera HOM05D005526 ORTHO05D006802 1.9e-117 426.8 443 57.8
Gorai.010G134800 Gossypium raimondii HOM05D005526 ORTHO05D006802 2.5e-117 426.4 443 56.9
Thecc.06G073100 Theobroma cacao HOM05D005526 ORTHO05D006802 2.5e-117 426.4 444 57.4
Manes.04G116500 Manihot esculenta HOM05D005526 ORTHO05D006802 7.3e-117 424.9 445 56.9
Duzib235G1092 Durio zibethinus HOM05D005526 ORTHO05D006802 9.5e-117 424.5 444 57.0
Glyma.15G010400 Glycine max HOM05D005526 ORTHO05D006802 9.5e-117 424.5 448 56.5
MBI01_g11875_MAGBIO Magnolia biondii HOM05D005526 ORTHO05D006802 9.5e-117 424.5 442 58.6
CsaV3_4G001390 Cucumis sativus L. HOM05D005526 ORTHO05D006802 2.1e-116 423.3 452 55.5
Lj3g0017842 Lotus japonicus HOM05D005526 ORTHO05D006802 6.2e-116 421.8 440 56.1
Glyma.13G363400 Glycine max HOM05D005526 ORTHO05D006802 1.1e-115 421.0 448 56.0
Gohir.A06G112600 Gossypium hirsutum HOM05D005526 ORTHO05D006802 1.8e-115 420.2 441 56.0
CiPaw.01G244400 Carya illinoinensis HOM05D005526 ORTHO05D006802 2.3e-115 419.9 443 56.4
Solyc06g067990.3 Solanum lycopersicum HOM05D005526 ORTHO05D006802 5.2e-115 418.7 438 56.8
THA.LOC104812497 Tarenaya hassleriana HOM05D005526 ORTHO05D006802 8.9e-115 417.9 417 59.7
Cpa.g.sc336.8 Carica papaya HOM05D005526 ORTHO05D006802 1.2e-114 417.5 418 58.6
Migut.D01055 Erythranthe guttata HOM05D005526 ORTHO05D006802 2.0e-114 416.8 405 58.5
Ca_01085_v3 Cicer arietinum L. HOM05D005526 ORTHO05D006802 2.6e-114 416.4 446 56.1
Medtr2g103110 Medicago truncatula HOM05D005526 ORTHO05D006802 2.6e-114 416.4 451 55.4
Sed0002477 Sechium edule HOM05D005526 ORTHO05D006802 3.4e-114 416.0 447 54.6
ECA234G2940 Erigeron canadensis HOM05D005526 ORTHO05D006802 5.8e-114 415.2 431 56.1
Prupe.3G079900 Prunus persica HOM05D005526 ORTHO05D006802 7.6e-114 414.8 454 55.7
FvH4_6g30340 Fragaria vesca HOM05D005526 ORTHO05D006802 1.3e-113 414.1 441 55.3
TWI18G0833 Tripterygium wilfordii HOM05D005526 ORTHO05D006802 1.3e-113 414.1 446 55.6
FAN02G2127 Fragaria x ananassa HOM05D005526 ORTHO05D006802 6.4e-113 411.8 441 54.9
SalBow2G2365 Salvia bowleyana HOM05D005526 ORTHO05D006802 6.4e-113 411.8 389 60.2
TWI75G1755 Tripterygium wilfordii HOM05D005526 ORTHO05D006802 4.1e-112 409.1 446 55.6
Lsat_1_v5_gn_5_132520 Lactuca sativa HOM05D005526 ORTHO05D006802 1.2e-111 407.5 427 57.4
Phvul.005G174900 Phaseolus vulgaris HOM05D005526 ORTHO05D006802 1.6e-111 407.1 434 56.0
PSO170G3249 Papaver somniferum HOM05D005526 ORTHO05D006802 2.7e-111 406.4 429 54.3
Aqoxy7G02084 Aquilegia oxysepala HOM05D005526 ORTHO05D006802 3.5e-111 406.0 436 56.2
arahy.Tifrunner.gnm1.ann1.FYL3MV Arachis hypogaea HOM05D005526 ORTHO05D006802 3.5e-111 406.0 453 55.6
ClCG07G012810 Citrullus lanatus HOM05D005526 ORTHO05D006802 3.9e-110 402.5 460 53.5
PGR031G1627 Punica granatum HOM05D005526 ORTHO05D006802 5.1e-110 402.1 394 58.9
MSTRG.9436 Avicennia marina HOM05D005526 ORTHO05D006802 6.6e-110 401.7 387 58.4
CANSAT56G0953 Cannabis sativa HOM05D005526 ORTHO05D006802 8.6e-110 401.4 420 56.7
DCAR_025483 Daucus carota HOM05D005526 ORTHO05D006802 3.3e-109 399.4 436 54.8
QL05p027824 Quercus lobata HOM05D005526 ORTHO05D006802 1.6e-108 397.1 524 48.3
Aa31LG4G500 Aethionema arabicum HOM05D005526 ORTHO05D006802 1.4e-107 394.0 405 56.3
Rhsim12G0193000 Rhododendron simsii HOM05D005526 ORTHO05D006802 1.4e-107 394.0 544 48.2
vmacro16915 Vaccinium macrocarpon HOM05D005526 ORTHO05D006802 1.8e-107 393.7 560 47.9
Oeu052283.1 Olea europaea HOM05D005526 ORTHO05D006802 6.9e-107 391.7 414 56.3
Thhalv10018648m.g Eutrema salsugineum HOM05D005526 ORTHO05D006802 8.9e-107 391.3 410 55.1
MD17G1204400 Malus domestica HOM05D005526 ORTHO05D006802 8.9e-107 391.3 524 48.5
CARHR074270 Cardamine hirsuta HOM05D005526 ORTHO05D006802 2.6e-106 389.8 411 55.5
SGA_v2.0_scaffold16G07615 Striga asiatica HOM05D005526 ORTHO05D006802 5.8e-106 388.7 398 57.0
VMungo1080G0636 Vigna mungo HOM05D005526 ORTHO05D006802 5.8e-106 388.7 394 55.6
Potri.001G172800 Populus trichocarpa HOM05D005526 ORTHO05D006802 7.6e-106 388.3 444 53.4
BcaC08g45297 Brassica carinata HOM05D005526 ORTHO05D006802 1.3e-105 387.5 419 54.7
Sp5g35600 Schrenkiella parvula HOM05D005526 ORTHO05D006802 2.9e-105 386.3 413 54.7
Nitab4.5_0000620g0060 Nicotiana tabacum HOM05D005526 ORTHO05D006802 4.9e-105 385.6 402 58.2
BcaB02g07290 Brassica carinata HOM05D005526 ORTHO05D006802 4.2e-104 382.5 425 53.6
A07p26570 Brassica napus HOM05D005526 ORTHO05D006802 4.2e-104 382.5 415 55.2
C06p28990 Brassica napus HOM05D005526 ORTHO05D006802 5.4e-104 382.1 420 55.2
BolC6t38065H Brassica oleracea HOM05D005526 ORTHO05D006802 4.6e-103 379.0 422 55.9
AT3G06820 Arabidopsis thaliana HOM05D005526 ORTHO05D006802 1.7e-102 377.1 403 55.3
Dinv30571 Davidia involucrata HOM05D005526 ORTHO05D006802 6.6e-102 375.2 371 59.6
AT1G80210 Arabidopsis thaliana HOM05D005526 ORTHO05D006802 1.3e-97 360.9 373 55.8
Peaxi162Scf00207g00731 Petunia axillaris HOM05D005526 ORTHO05D006802 3.2e-96 356.3 395 53.2
CDE02G1452 Ceratophyllum demersum HOM05D005526 ORTHO05D006802 2.1e-95 353.6 437 50.6
FAN09G0405 Fragaria x ananassa HOM05D005526 ORTHO05D006802 1.0e-94 351.3 441 50.1
BraA07t30300Z Brassica rapa HOM05D005526 ORTHO05D006802 4.0e-91 339.3 411 51.1
GSVIVG01017251001 Vitis vinifera HOM05D005526 ORTHO05D006802 5.3e-91 339.0 330 60.3
Os05g0542600 Oryza sativa ssp. japonica HOM05D005526 ORTHO05D006802 2.0e-90 337.0 444 46.6
Zm00001eb294490 Zea mays HOM05D005526 ORTHO05D006802 7.6e-90 335.1 444 48.4
unitig_899.g14780 Utricularia gibba HOM05D005526 ORTHO05D006802 4.6e-87 325.9 416 48.8
SEGI_35764 Sequoiadendron giganteum HOM05D005526 ORTHO05D006802 2.3e-86 323.6 433 46.2
CiPaw.02G154800 Carya illinoinensis HOM05D005526 ORTHO05D006802 3.0e-86 323.2 334 58.7
Lj5C68G25 Lonicera japonica HOM05D005526 ORTHO05D006802 1.1e-85 321.2 333 58.0
HanXRQChr10g0303071 Helianthus annuus HOM05D005526 ORTHO05D006802 2.5e-85 320.1 321 57.3
RcHm_v2.0_Chr2g0136621 Rosa chinensis HOM05D005526 ORTHO05D006802 7.4e-85 318.5 324 57.7
CAN.G395.46 Capsicum annuum HOM05D005526 ORTHO05D006802 9.6e-85 318.2 314 58.9
COL.COLO4_12896 Corchorus olitorius HOM05D005526 ORTHO05D006802 1.3e-84 317.8 333 57.1
arahy.Tifrunner.gnm1.ann1.IMA97E Arachis hypogaea HOM05D005526 ORTHO05D006802 2.1e-84 317.0 474 47.3
Nitab4.5_0013710g0010 Nicotiana tabacum HOM05D005526 ORTHO05D006802 2.1e-84 317.0 404 51.7
Lalb_Chr14g0373681 Lupinus albus HOM05D005526 ORTHO05D006802 2.8e-84 316.6 328 57.9
MELO3C017901.2 Cucumis melo HOM05D005526 ORTHO05D006802 6.2e-84 315.5 333 55.3
Sopen06g025270 Solanum pennellii HOM05D005526 ORTHO05D006802 1.4e-83 314.3 315 58.4
Psat5g300440 Pisum sativum HOM05D005526 ORTHO05D006802 3.1e-83 313.2 331 55.3
CSS0003126 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 1.7e-81 307.4 333 56.8
SGA_v2.0_scaffold37G14789 Striga asiatica HOM05D005526 ORTHO05D006802 1.4e-80 304.3 399 48.9
Cc04_g04020 Coffea canephora HOM05D005526 ORTHO05D006802 2.5e-80 303.5 326 54.9
Oeu063802.2 Olea europaea HOM05D005526 ORTHO05D006802 2.5e-77 293.5 325 56.9
TPR.G37284 Trifolium pratense HOM05D005526 ORTHO05D006802 1.8e-75 287.3 285 57.5
AL2G41300 Arabidopsis lyrata HOM05D005526 ORTHO05D006802 1.0e-73 281.6 295 55.3
AL3G17940 Arabidopsis lyrata HOM05D005526 ORTHO05D006802 1.9e-72 277.3 300 54.0
Carub.0002s2731 Capsella rubella HOM05D005526 ORTHO05D006802 1.9e-72 277.3 301 53.8
ATR1156G007 Amborella trichopoda HOM05D005526 ORTHO05D006802 4.6e-71 272.7 290 53.8
Pp3c27_4740 Physcomitrium patens HOM05D005526 ORTHO05D006802 4.6e-71 272.7 417 41.5
Mapoly0053s0043 Marchantia polymorpha HOM05D005526 ORTHO05D006802 3.0e-70 270.0 378 43.4
CDE01G0292 Ceratophyllum demersum HOM05D005526 ORTHO05D006802 2.4e-67 260.4 403 44.7
CBR_g46861 Chara braunii HOM05D005526 ORTHO05D006802 1.0e-65 255.0 440 38.0
HPP92_009843 Vanilla planifolia HOM05D005526 ORTHO05D006802 2.3e-62 243.8 328 47.3
Haze_16513 Corylus avellana HOM05D005526 ORTHO05D006802 1.0e-57 228.4 192 63.5
Haze_16512 Corylus avellana HOM05D005526 ORTHO05D006802 4.2e-48 196.4 229 56.3
FAN14G4362 Fragaria x ananassa HOM05D005526 ORTHO05D006802 5.5e-48 196.1 297 44.4
AagrBONN_evm.TU.Sc2ySwM_368.2431 Anthoceros agrestis HOM05D005526 ORTHO05D006802 7.0e-43 179.1 280 40.0
Zm00001eb342510 Zea mays HOM05D005526 ORTHO05D006802 1.5e-40 171.4 213 51.6
Oeu014842.2 Olea europaea HOM05D005526 ORTHO05D006802 1.2e-39 168.3 327 41.0
SMO196G0028 Selaginella moellendorffii HOM05D005526 ORTHO05D006802 2.8e-31 140.6 252 34.5
TPR.G37278 Trifolium pratense HOM05D005526 ORTHO05D006802 2.2e-28 131.0 75 86.7
CSS0009710 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 3.1e-27 127.1 75 84.0
Sed0012845 Sechium edule HOM05D005526 ORTHO05D006802 1.2e-26 125.2 319 32.9
ATR1156G076 Amborella trichopoda HOM05D005526 ORTHO05D006802 1.6e-26 124.8 75 84.0
Cc04_g04010 Coffea canephora HOM05D005526 ORTHO05D006802 1.6e-26 124.8 75 82.7
Lj5A68T70 Lonicera japonica HOM05D005526 ORTHO05D006802 1.6e-26 124.8 75 82.7
FAN05G1558 Fragaria x ananassa HOM05D005526 ORTHO05D006802 2.0e-26 124.4 75 82.7
Sabra01G0138900 Salix brachista HOM05D005526 ORTHO05D006802 4.5e-26 123.2 75 81.3
HanXRQChr10g0303081 Helianthus annuus HOM05D005526 ORTHO05D006802 1.0e-25 122.1 75 82.7
RcHm_v2.0_Chr2g0136631 Rosa chinensis HOM05D005526 ORTHO05D006802 1.0e-25 122.1 75 81.3
Sopen06g025280 Solanum pennellii HOM05D005526 ORTHO05D006802 1.0e-25 122.1 75 78.7
PGSC0003DMG401028513 Solanum tuberosum HOM05D005526 ORTHO05D006802 1.0e-25 122.1 75 78.7
Lalb_Chr14g0373671 Lupinus albus HOM05D005526 ORTHO05D006802 1.7e-25 121.3 75 80.0
GSVIVG01017250001 Vitis vinifera HOM05D005526 ORTHO05D006802 5.0e-25 119.8 68 85.3
AagrBONN_evm.TU.Sc2ySwM_368.2432 Anthoceros agrestis HOM05D005526 ORTHO05D006802 4.0e-22 110.2 75 69.3
Cre11.g475400 Chlamydomonas reinhardtii HOM05D005526 ORTHO05D006802 5.7e-21 106.3 379 28.5
SalBow8G0881 Salvia bowleyana HOM05D005526 ORTHO05D006802 7.5e-13 79.3 89 55.1
Pp3c25_2940 Physcomitrium patens HOM05D005526 ORTHO05D311957 1.7e-12 78.2 87 49.4
Gohir.A10G140700 Gossypium hirsutum HOM05D000009 ORTHO05D000008 6.6e-09 66.2 37 86.5
Pp3c6_24500 Physcomitrium patens HOM05D005526 ORTHO05D006802 6.6e-09 66.2 60 53.3
CAN.G395.47 Capsicum annuum HOM05D005526 ORTHO05D006802 4.3e-08 63.5 55 54.5
COL.COLO4_12895 Corchorus olitorius HOM05D005526 ORTHO05D006802 3.1e-06 57.4 29 89.7


User provided reference genes

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