Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia23573 Actinidia chinensis HOM05D004526 ORTHO05D005548 2.4e-136 488.8 245 100.0
Actinidia06070 Actinidia chinensis HOM05D004526 ORTHO05D005548 3.1e-75 285.8 251 64.1
Dinv07025 Davidia involucrata HOM05D004526 ORTHO05D005548 8.2e-68 261.2 255 60.8
CSS0019571 Camellia sinensis var. sinensis HOM05D004526 ORTHO05D005548 4.1e-67 258.8 255 60.4
vmacro05738 Vaccinium macrocarpon HOM05D004526 ORTHO05D005548 4.1e-67 258.8 251 59.8
RhsimUnG0055200 Rhododendron simsii HOM05D004526 ORTHO05D005548 2.0e-66 256.5 252 59.1
Dinv06512 Davidia involucrata HOM05D004526 ORTHO05D005548 1.9e-64 250.0 258 55.8
Lsat_1_v5_gn_4_176840 Lactuca sativa HOM05D004526 ORTHO05D005548 9.4e-64 247.7 261 55.6
Actinidia27487 Actinidia chinensis HOM05D004526 ORTHO05D005548 8.0e-63 244.6 231 61.5
Lj7A401T78 Lonicera japonica HOM05D004526 ORTHO05D005548 2.3e-62 243.0 255 55.7
HanXRQChr09g0265571 Helianthus annuus HOM05D004526 ORTHO05D005548 3.0e-62 242.7 243 58.8
CsaV3_5G037880 Cucumis sativus L. HOM05D004526 ORTHO05D005548 8.8e-62 241.1 252 56.7
TAR622G0275 Trochodendron aralioides HOM05D004526 ORTHO05D005548 1.2e-61 240.7 244 59.0
CiPaw.04G020200 Carya illinoinensis HOM05D004526 ORTHO05D005548 1.5e-61 240.4 247 56.7
unitig_578.g15969 Utricularia gibba HOM05D004526 ORTHO05D005548 1.5e-61 240.4 243 56.0
Psat6g239400 Pisum sativum HOM05D004526 ORTHO05D005548 2.0e-61 240.0 250 58.4
Medtr1g116060 Medicago truncatula HOM05D004526 ORTHO05D005548 2.6e-61 239.6 250 56.0
ClCG09G018400 Citrullus lanatus HOM05D004526 ORTHO05D005548 3.4e-61 239.2 252 56.3
SalBow1G4721 Salvia bowleyana HOM05D004526 ORTHO05D005548 4.4e-61 238.8 243 57.2
Gohir.A05G364100 Gossypium hirsutum HOM05D004526 ORTHO05D005548 5.7e-61 238.4 253 53.8
Migut.E01591 Erythranthe guttata HOM05D004526 ORTHO05D005548 7.5e-61 238.0 255 54.9
Ca_11340_v3 Cicer arietinum L. HOM05D004526 ORTHO05D005548 9.8e-61 237.7 256 56.2
Nitab4.5_0000157g0090 Nicotiana tabacum HOM05D004526 ORTHO05D005548 9.8e-61 237.7 255 55.7
CAN.G226.26 Capsicum annuum HOM05D004526 ORTHO05D005548 1.3e-60 237.3 255 56.1
Manes.17G021000 Manihot esculenta HOM05D004526 ORTHO05D005548 1.7e-60 236.9 256 56.2
MELO3C021974.2 Cucumis melo HOM05D004526 ORTHO05D005548 2.2e-60 236.5 249 56.2
PGSC0003DMG400030284 Solanum tuberosum HOM05D004526 ORTHO05D005548 2.2e-60 236.5 255 55.7
Haze_14584 Corylus avellana HOM05D004526 ORTHO05D005548 3.7e-60 235.7 251 54.2
Duzib147G0459 Durio zibethinus HOM05D004526 ORTHO05D005548 3.7e-60 235.7 252 54.0
Nitab4.5_0001504g0050 Nicotiana tabacum HOM05D004526 ORTHO05D005548 4.8e-60 235.3 255 55.3
Hund13244 Selenicereus undatus HOM05D004526 ORTHO05D005548 4.8e-60 235.3 230 58.3
DCAR_021672 Daucus carota HOM05D004526 ORTHO05D005548 6.3e-60 235.0 229 57.6
Cfa007509 Carpinus fangiana HOM05D004526 ORTHO05D005548 8.3e-60 234.6 251 54.2
Glyma.20G242900 Glycine max HOM05D004526 ORTHO05D005548 8.3e-60 234.6 250 54.8
VMungo0720G0008 Vigna mungo HOM05D004526 ORTHO05D005548 8.3e-60 234.6 250 55.2
Atru.chr8.1914 Acer truncatum HOM05D004526 ORTHO05D005548 1.1e-59 234.2 250 53.2
MSTRG.1703 Avicennia marina HOM05D004526 ORTHO05D005548 1.1e-59 234.2 243 56.4
Glyma.10G292700 Glycine max HOM05D004526 ORTHO05D005548 1.1e-59 234.2 250 55.2
Nn4g23045 Nelumbo nucifera HOM05D004526 ORTHO05D005548 1.1e-59 234.2 254 54.7
Sabra17G0069000 Salix brachista HOM05D004526 ORTHO05D005548 1.1e-59 234.2 233 57.9
GSVIVG01032607001 Vitis vinifera HOM05D004526 ORTHO05D005548 1.1e-59 234.2 242 56.2
Gohir.D04G050600 Gossypium hirsutum HOM05D004526 ORTHO05D005548 1.4e-59 233.8 253 53.4
Gorai.012G056100 Gossypium raimondii HOM05D004526 ORTHO05D005548 1.4e-59 233.8 253 53.4
Oeu018626.2 Olea europaea HOM05D004526 ORTHO05D005548 1.4e-59 233.8 281 51.6
Solyc01g009290.4 Solanum lycopersicum HOM05D004526 ORTHO05D005548 1.4e-59 233.8 255 54.9
Sopen01g004780 Solanum pennellii HOM05D004526 ORTHO05D005548 1.4e-59 233.8 255 54.9
Thecc.04G074400 Theobroma cacao HOM05D004526 ORTHO05D005548 1.4e-59 233.8 252 53.2
Peaxi162Scf00345g00811 Petunia axillaris HOM05D004526 ORTHO05D005548 1.8e-59 233.4 243 57.2
Sed0004091 Sechium edule HOM05D004526 ORTHO05D005548 5.4e-59 231.9 252 54.8
EL10Ac2g02933 Beta vulgaris HOM05D004526 ORTHO05D005548 1.2e-58 230.7 230 57.0
Phvul.007G007300 Phaseolus vulgaris HOM05D004526 ORTHO05D005548 1.2e-58 230.7 246 55.7
Potri.017G077200 Populus trichocarpa HOM05D004526 ORTHO05D005548 1.2e-58 230.7 240 57.5
Cc08_g10980 Coffea canephora HOM05D004526 ORTHO05D005548 2.0e-58 229.9 255 55.3
Prupe.3G272100 Prunus persica HOM05D004526 ORTHO05D005548 3.5e-58 229.2 236 54.7
CiPaw.03G030200 Carya illinoinensis HOM05D004526 ORTHO05D005548 4.5e-58 228.8 251 53.0
COL.COLO4_25181 Corchorus olitorius HOM05D004526 ORTHO05D005548 4.5e-58 228.8 252 52.4
QL02p080561 Quercus lobata HOM05D004526 ORTHO05D005548 4.5e-58 228.8 249 53.8
Eucgr.I01917 Eucalyptus grandis HOM05D004526 ORTHO05D005548 5.9e-58 228.4 245 55.1
Lalb_Chr21g0307111 Lupinus albus HOM05D004526 ORTHO05D005548 5.9e-58 228.4 251 54.2
TAR481G0009 Trochodendron aralioides HOM05D004526 ORTHO05D005548 1.0e-57 227.6 250 52.0
RcHm_v2.0_Chr2g0169161 Rosa chinensis HOM05D004526 ORTHO05D005548 1.3e-57 227.3 237 55.7
Aqoxy3G03268 Aquilegia oxysepala HOM05D004526 ORTHO05D005548 2.9e-57 226.1 246 54.9
Sc11g0006930 Simmondsia chinensis HOM05D004526 ORTHO05D005548 2.9e-57 226.1 227 56.8
PGR142G4111 Punica granatum HOM05D004526 ORTHO05D005548 3.8e-57 225.7 249 53.8
PSO017G3834 Papaver somniferum HOM05D004526 ORTHO05D005548 5.0e-57 225.3 256 52.3
FAN05G4948 Fragaria x ananassa HOM05D004526 ORTHO05D005548 6.5e-57 224.9 236 55.1
Nn3g17130 Nelumbo nucifera HOM05D004526 ORTHO05D005548 6.5e-57 224.9 229 55.0
TWI60G0005 Tripterygium wilfordii HOM05D004526 ORTHO05D005548 6.5e-57 224.9 233 55.8
FAN02G4162 Fragaria x ananassa HOM05D004526 ORTHO05D005548 8.6e-57 224.6 236 55.5
Lj5g0010112 Lotus japonicus HOM05D004526 ORTHO05D004861 1.1e-56 224.2 252 52.4
PSO478G0915 Papaver somniferum HOM05D004526 ORTHO05D005548 1.5e-56 223.8 256 52.3
MD17G1047000 Malus domestica HOM05D004526 ORTHO05D005548 2.5e-56 223.0 254 52.0
PGR142G2860 Punica granatum HOM05D004526 ORTHO05D005548 2.5e-56 223.0 249 53.4
FAN09G4881 Fragaria x ananassa HOM05D004526 ORTHO05D005548 3.2e-56 222.6 236 54.7
MD09G1046200 Malus domestica HOM05D004526 ORTHO05D005548 4.2e-56 222.2 226 55.3
Ciclev10011737m.g Citrus clementina HOM05D004526 ORTHO05D005548 9.5e-56 221.1 253 53.8
Thhalv10020725m.g Eutrema salsugineum HOM05D004526 ORTHO05D005548 1.2e-55 220.7 268 50.7
FvH4_6g49260 Fragaria vesca HOM05D004526 ORTHO05D005548 1.6e-55 220.3 232 55.2
BcaB04g19307 Brassica carinata HOM05D004526 ORTHO05D005548 3.6e-55 219.2 269 49.4
BcaC01g04355 Brassica carinata HOM05D004526 ORTHO05D005548 3.6e-55 219.2 270 49.3
A03p33780 Brassica napus HOM05D004526 ORTHO05D005548 3.6e-55 219.2 269 49.4
C03p41080 Brassica napus HOM05D004526 ORTHO05D005548 3.6e-55 219.2 270 49.3
BolC3t16397H Brassica oleracea HOM05D004526 ORTHO05D005548 3.6e-55 219.2 270 49.3
BraA03t12552Z Brassica rapa HOM05D004526 ORTHO05D005548 3.6e-55 219.2 269 49.4
Sp3g03530 Schrenkiella parvula HOM05D004526 ORTHO05D005548 6.1e-55 218.4 266 48.9
CARHR078910 Cardamine hirsuta HOM05D004526 ORTHO05D005548 8.0e-55 218.0 259 51.4
arahy.Tifrunner.gnm1.ann1.S1RF4U Arachis hypogaea HOM05D004526 ORTHO05D005548 1.0e-54 217.6 229 55.9
FAN14G2223 Fragaria x ananassa HOM05D004526 ORTHO05D005548 1.0e-54 217.6 231 55.0
HanXRQChr12g0357441 Helianthus annuus HOM05D004526 ORTHO05D005548 1.0e-54 217.6 250 53.2
TAR305G0002 Trochodendron aralioides HOM05D004526 ORTHO05D005548 1.8e-54 216.9 250 51.6
Carub.0003s0384 Capsella rubella HOM05D004526 ORTHO05D005548 4.0e-54 215.7 269 49.8
ATR0051G026 Amborella trichopoda HOM05D004526 ORTHO05D005548 5.2e-54 215.3 240 53.3
PSO591G0197 Papaver somniferum HOM05D004526 ORTHO05D005548 5.2e-54 215.3 257 51.8
arahy.Tifrunner.gnm1.ann1.31SG4H Arachis hypogaea HOM05D004526 ORTHO05D005548 8.8e-54 214.5 229 55.5
AL3G14740 Arabidopsis lyrata HOM05D004526 ORTHO05D005548 1.5e-53 213.8 256 49.2
AT3G04680 Arabidopsis thaliana HOM05D004526 ORTHO05D005548 1.5e-53 213.8 269 48.3
PSO832G1140 Papaver somniferum HOM05D004526 ORTHO05D005548 2.6e-53 213.0 257 51.4
arahy.Tifrunner.gnm1.ann1.PC3EEW Arachis hypogaea HOM05D004526 ORTHO05D005548 4.4e-53 212.2 229 54.6
THA.LOC104811064 Tarenaya hassleriana HOM05D004526 ORTHO05D005548 4.4e-53 212.2 260 48.8
Zm00001eb205260 Zea mays HOM05D004526 ORTHO05D005548 1.3e-52 210.7 225 52.4
HPP92_012836 Vanilla planifolia HOM05D004526 ORTHO05D005548 2.8e-52 209.5 230 51.7
Aa31LG5G15080 Aethionema arabicum HOM05D004526 ORTHO05D005548 2.4e-51 206.5 264 48.5
ECA232G3358 Erigeron canadensis HOM05D004526 ORTHO05D005548 2.4e-51 206.5 243 52.3
CDE04G0248 Ceratophyllum demersum HOM05D004526 ORTHO05D005548 7.0e-51 204.9 221 54.3
Os02g0217500 Oryza sativa ssp. japonica HOM05D004526 ORTHO05D005548 1.2e-50 204.1 235 50.2
SEGI_10762 Sequoiadendron giganteum HOM05D004526 ORTHO05D005548 8.6e-49 198.0 227 51.1
arahy.Tifrunner.gnm1.ann1.C6A6VI Arachis hypogaea HOM05D004526 ORTHO05D005548 1.2e-47 194.1 229 51.5
Mapoly0016s0080 Marchantia polymorpha HOM05D004526 ORTHO05D005548 2.8e-47 193.0 241 46.9
Sp1g35350 Schrenkiella parvula HOM05D004526 ORTHO05D005548 3.6e-47 192.6 255 47.1
MD09G1046500 Malus domestica HOM05D004526 ORTHO05D005548 4.7e-47 192.2 214 54.2
SMO165G0052 Selaginella moellendorffii HOM05D004526 ORTHO05D005548 1.5e-45 187.2 238 45.8
AagrBONN_evm.TU.Sc2ySwM_344.3939 Anthoceros agrestis HOM05D004526 ORTHO05D005548 3.4e-45 186.0 273 42.1
AL7G50210 Arabidopsis lyrata HOM05D004526 ORTHO05D005548 3.7e-44 182.6 234 44.0
CSS0037061 Camellia sinensis var. sinensis HOM05D004526 ORTHO05D005548 4.9e-44 182.2 117 79.5
AUR62038875 Chenopodium quinoa HOM05D004526 ORTHO05D005548 4.6e-42 175.6 117 76.1
AUR62031643 Chenopodium quinoa HOM05D004526 ORTHO05D005548 3.0e-41 172.9 117 75.2
SHI08813 Sapria himalayana HOM05D004526 ORTHO05D005548 5.0e-41 172.2 202 49.5
HPP92_009728 Vanilla planifolia HOM05D004526 ORTHO05D005548 5.0e-41 172.2 227 44.5
BcaB06g27742 Brassica carinata HOM05D004526 ORTHO05D005548 6.6e-41 171.8 234 43.6
C04p49900 Brassica napus HOM05D004526 ORTHO05D005548 8.6e-41 171.4 254 41.7
AT5G39930 Arabidopsis thaliana HOM05D004526 ORTHO05D005548 1.1e-40 171.0 233 44.2
BcaC02g08842 Brassica carinata HOM05D004526 ORTHO05D005548 1.1e-40 171.0 254 41.7
A04p15620 Brassica napus HOM05D004526 ORTHO05D005548 5.6e-40 168.7 254 41.3
BraA04t17197Z Brassica rapa HOM05D004526 ORTHO05D005548 5.6e-40 168.7 254 41.3
C06p02960 Brassica napus HOM05D004526 ORTHO05D005548 7.3e-40 168.3 234 41.0
BolC6t35419H Brassica oleracea HOM05D004526 ORTHO05D005548 7.3e-40 168.3 234 41.0
arahy.Tifrunner.gnm1.ann1.9G88ZW Arachis hypogaea HOM05D004526 ORTHO05D005548 2.1e-39 166.8 117 74.4
SpUn0485_0020 Schrenkiella parvula HOM05D004526 ORTHO05D005548 3.6e-39 166.0 233 42.5
BcaC08g43036 Brassica carinata HOM05D004526 ORTHO05D005548 1.4e-38 164.1 234 40.6
Thhalv10028283m.g Eutrema salsugineum HOM05D004526 ORTHO05D005548 2.3e-38 163.3 213 44.1
Carub.0007s3580 Capsella rubella HOM05D004526 ORTHO05D005548 3.1e-38 162.9 199 48.7
CARHR262250 Cardamine hirsuta HOM05D004526 ORTHO05D005548 8.9e-38 161.4 239 41.4
Pp3c21_6910 Physcomitrium patens HOM05D004526 ORTHO05D005548 1.5e-37 160.6 126 64.3
CBR_g42172 Chara braunii HOM05D004526 ORTHO05D005548 9.8e-37 157.9 248 38.3
Sp7g01800 Schrenkiella parvula HOM05D004526 ORTHO05D005548 1.1e-32 144.4 218 42.2
arahy.Tifrunner.gnm1.ann1.QUI3Q9 Arachis hypogaea HOM05D004526 ORTHO05D005548 3.3e-32 142.9 77 88.3
BcaB07g33761 Brassica carinata HOM05D004526 ORTHO05D005548 6.8e-30 135.2 81 70.4
arahy.Tifrunner.gnm1.ann1.NNND2U Arachis hypogaea HOM05D004526 ORTHO05D005548 4.4e-29 132.5 82 80.5
BolC4t26581H Brassica oleracea HOM05D004526 ORTHO05D005548 2.4e-27 126.7 225 38.7
Cpa.g.c42185 Carica papaya HOM05D004526 ORTHO05D005548 3.2e-27 126.3 61 96.7
PRCOL_00003252 Prasinoderma coloniale HOM05D004526 ORTHO05D005548 2.7e-26 123.2 198 38.4
MCO09G184 Micromonas commoda HOM05D004526 ORTHO05D005548 6.0e-26 122.1 217 35.5
Cre03.g194800 Chlamydomonas reinhardtii HOM05D004526 ORTHO05D005548 1.7e-25 120.6 113 51.3
TAR629G3114 Trochodendron aralioides HOM05D004526 ORTHO05D002794 3.9e-25 119.4 66 84.8
Cfa007708 Carpinus fangiana HOM05D004526 ORTHO05D005548 8.6e-25 118.2 119 58.8
Cpa.g.sc14.41 Carica papaya HOM05D004526 ORTHO05D005548 6.2e-15 85.5 67 64.2
TPR.G73 Trifolium pratense HOM05D004526 ORTHO05D005548 1.2e-13 81.3 68 63.2
arahy.Tifrunner.gnm1.ann1.HJC8LN Arachis hypogaea HOM05D004526 ORTHO05D005548 3.8e-12 76.3 136 41.2
MD09G1046100 Malus domestica HOM05D004526 ORTHO05D005548 1.1e-08 64.7 43 67.4
CSS0012548 Camellia sinensis var. sinensis HOM05D004526 ORTHO05D005548 1.1e-06 58.2 33 81.8
CSS0008092 Camellia sinensis var. sinensis HOM05D004526 ORTHO05D005548 2.4e-06 57.0 33 78.8
CBR_g8796 Chara braunii HOM05D000019 ORTHO05D000048 9.0e-06 55.1 81 35.8


User provided reference genes

Program Settings