Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia09852 Actinidia chinensis HOM05D005263 ORTHO05D006891 3.7e-70 268.1 133 100.0
Actinidia36248 Actinidia chinensis HOM05D005263 ORTHO05D006891 2.0e-52 209.1 112 92.9
vmacro22255 Vaccinium macrocarpon HOM05D005263 ORTHO05D006891 5.0e-51 204.5 113 89.4
Dinv33264 Davidia involucrata HOM05D005263 ORTHO05D006891 7.2e-50 200.7 112 88.4
Rhsim10G0000700 Rhododendron simsii HOM05D005263 ORTHO05D006891 1.0e-48 196.8 112 86.6
CSS0005310 Camellia sinensis var. sinensis HOM05D005263 ORTHO05D006891 1.8e-48 196.1 112 85.7
Ciclev10017439m.g Citrus clementina HOM05D005263 ORTHO05D006891 2.3e-48 195.7 112 86.6
Cc07_g01440 Coffea canephora HOM05D005263 ORTHO05D006891 2.3e-48 195.7 112 84.8
Hma1.2p1_0265F.1_g106760 Hydrangea macrophylla HOM05D005263 ORTHO05D006891 6.7e-48 194.1 112 85.7
Hma1.2p1_0265F.1_g106770 Hydrangea macrophylla HOM05D005263 ORTHO05D006891 6.7e-48 194.1 112 85.7
TAR622G0136 Trochodendron aralioides HOM05D005263 ORTHO05D006891 1.1e-47 193.4 112 85.7
Lj7C619G12 Lonicera japonica HOM05D005263 ORTHO05D006891 2.0e-47 192.6 112 83.9
THA.LOC104821142 Tarenaya hassleriana HOM05D005263 ORTHO05D006891 2.0e-47 192.6 112 85.7
Nn4g22084 Nelumbo nucifera HOM05D005263 ORTHO05D006891 2.6e-47 192.2 112 84.8
Potri.002G237400 Populus trichocarpa HOM05D005263 ORTHO05D006891 2.6e-47 192.2 112 85.7
PGR142G1885 Punica granatum HOM05D005263 ORTHO05D006891 4.4e-47 191.4 112 84.8
Cpa.g.sc70.43 Carica papaya HOM05D005263 ORTHO05D006891 5.7e-47 191.0 112 84.8
Eucgr.I01574 Eucalyptus grandis HOM05D005263 ORTHO05D006891 5.7e-47 191.0 112 83.9
Gohir.A09G000037 Gossypium hirsutum HOM05D005263 ORTHO05D006891 5.7e-47 191.0 112 85.7
Gohir.D09G000101 Gossypium hirsutum HOM05D005263 ORTHO05D006891 5.7e-47 191.0 112 85.7
Gorai.006G000100 Gossypium raimondii HOM05D005263 ORTHO05D006891 5.7e-47 191.0 112 85.7
BcaNung05596 Brassica carinata HOM05D005263 ORTHO05D006891 1.3e-46 189.9 112 83.9
Gohir.A09G000300 Gossypium hirsutum HOM05D005263 ORTHO05D006891 1.3e-46 189.9 112 84.8
Manes.11G073900 Manihot esculenta HOM05D005263 ORTHO05D006891 1.3e-46 189.9 112 83.0
Solyc02g094590.3 Solanum lycopersicum HOM05D005263 ORTHO05D006891 1.3e-46 189.9 112 83.9
Potri.014G145000 Populus trichocarpa HOM05D005263 ORTHO05D006891 1.7e-46 189.5 112 84.8
QL02p068698 Quercus lobata HOM05D005263 ORTHO05D006891 1.7e-46 189.5 112 83.0
Sc07g0003930 Simmondsia chinensis HOM05D005263 ORTHO05D006891 1.7e-46 189.5 112 83.0
AUR62017472 Chenopodium quinoa HOM05D005263 ORTHO05D006891 2.2e-46 189.1 131 74.8
Sabra02G0180900 Salix brachista HOM05D005263 ORTHO05D006891 2.2e-46 189.1 112 84.8
Sp3g00030 Schrenkiella parvula HOM05D005263 ORTHO05D006891 2.2e-46 189.1 112 83.9
TWI60G0166 Tripterygium wilfordii HOM05D005263 ORTHO05D006891 2.2e-46 189.1 112 83.0
AL3G10030 Arabidopsis lyrata HOM05D005263 ORTHO05D006891 2.8e-46 188.7 112 83.9
CAN.G473.163 Capsicum annuum HOM05D005263 ORTHO05D006891 3.7e-46 188.3 112 83.9
Haze_14959 Corylus avellana HOM05D005263 ORTHO05D006891 3.7e-46 188.3 112 84.8
Sopen02g039240 Solanum pennellii HOM05D005263 ORTHO05D006891 3.7e-46 188.3 112 83.9
Prupe.3G314900 Prunus persica HOM05D005263 ORTHO05D006891 4.8e-46 188.0 112 83.9
Thhalv10020076m.g Eutrema salsugineum HOM05D005263 ORTHO05D006891 6.3e-46 187.6 112 83.9
GSVIVG01032955001 Vitis vinifera HOM05D005263 ORTHO05D006891 6.3e-46 187.6 112 83.0
BcaNung05595 Brassica carinata HOM05D005263 ORTHO05D006891 1.1e-45 186.8 112 82.1
CDE02G2322 Ceratophyllum demersum HOM05D005263 ORTHO05D006891 1.1e-45 186.8 112 80.4
Thecc.04G050600 Theobroma cacao HOM05D005263 ORTHO05D006891 1.4e-45 186.4 112 83.9
AT3G02060 Arabidopsis thaliana HOM05D005263 ORTHO05D006891 1.8e-45 186.0 112 83.0
Carub.0003s0003 Capsella rubella HOM05D005263 ORTHO05D006891 2.4e-45 185.7 112 83.0
CARHR074870 Cardamine hirsuta HOM05D005263 ORTHO05D006891 2.4e-45 185.7 112 83.0
COL.COLO4_13398 Corchorus olitorius HOM05D005263 ORTHO05D006891 2.4e-45 185.7 112 83.9
FvH4_6g54430 Fragaria vesca HOM05D005263 ORTHO05D006891 2.4e-45 185.7 112 82.1
FAN02G2182 Fragaria x ananassa HOM05D005263 ORTHO05D006891 2.4e-45 185.7 112 82.1
FAN14G4399 Fragaria x ananassa HOM05D005263 ORTHO05D006891 2.4e-45 185.7 112 82.1
RcHm_v2.0_Chr2g0176681 Rosa chinensis HOM05D005263 ORTHO05D006891 2.4e-45 185.7 112 82.1
BolC9t52937H Brassica oleracea HOM05D005263 ORTHO05D006891 3.1e-45 185.3 113 80.5
ATR0582G042 Amborella trichopoda HOM05D005263 ORTHO05D006891 4.1e-45 184.9 112 81.2
EL10Ac6g13898 Beta vulgaris HOM05D005263 ORTHO05D006891 4.1e-45 184.9 112 81.2
Sabra14G0109200 Salix brachista HOM05D005263 ORTHO05D006891 5.3e-45 184.5 112 83.0
FAN05G5194 Fragaria x ananassa HOM05D005263 ORTHO05D006891 9.1e-45 183.7 112 81.2
Peaxi162Scf00420g00940 Petunia axillaris HOM05D005263 ORTHO05D006891 9.1e-45 183.7 112 82.1
SalBow4G2620 Salvia bowleyana HOM05D005263 ORTHO05D006891 9.1e-45 183.7 112 82.1
Migut.F00003 Erythranthe guttata HOM05D005263 ORTHO05D006891 1.5e-44 183.0 112 81.2
Aqoxy5G03006 Aquilegia oxysepala HOM05D005263 ORTHO05D006891 2.0e-44 182.6 112 82.1
CiPaw.03G000200 Carya illinoinensis HOM05D005263 ORTHO05D006891 2.0e-44 182.6 112 83.9
Atru.chr6.2720 Acer truncatum HOM05D005263 ORTHO05D006891 2.6e-44 182.2 112 82.1
PSO017G0637 Papaver somniferum HOM05D005263 ORTHO05D006891 2.6e-44 182.2 112 80.4
PSO478G0722 Papaver somniferum HOM05D005263 ORTHO05D006891 2.6e-44 182.2 112 80.4
Phvul.001G099500 Phaseolus vulgaris HOM05D005263 ORTHO05D006891 2.6e-44 182.2 112 83.0
MD17G1004500 Malus domestica HOM05D005263 ORTHO05D006891 3.5e-44 181.8 112 81.2
Aa31LG5G11240 Aethionema arabicum HOM05D005263 ORTHO05D006891 4.5e-44 181.4 112 81.2
CANSAT64G2729 Cannabis sativa HOM05D005263 ORTHO05D006891 7.7e-44 180.6 112 79.5
ECA238G3309 Erigeron canadensis HOM05D005263 ORTHO05D006891 2.2e-43 179.1 112 74.1
Medtr7g084560 Medicago truncatula HOM05D005263 ORTHO05D006891 2.2e-43 179.1 112 80.4
SGA_v2.0_scaffold122G33171 Striga asiatica HOM05D005263 ORTHO05D006891 2.9e-43 178.7 112 79.5
Ca_08228_v3 Cicer arietinum L. HOM05D005263 ORTHO05D006891 3.8e-43 178.3 112 81.2
DCAR_000962 Daucus carota HOM05D005263 ORTHO05D006891 5.0e-43 177.9 112 79.5
ClCG01G007920 Citrullus lanatus HOM05D005263 ORTHO05D006891 6.5e-43 177.6 112 76.8
MELO3C005086.2 Cucumis melo HOM05D005263 ORTHO05D006891 6.5e-43 177.6 112 76.8
CsaV3_5G021940 Cucumis sativus L. HOM05D005263 ORTHO05D006891 6.5e-43 177.6 112 76.8
Glyma.16G046000 Glycine max HOM05D005263 ORTHO05D006891 1.1e-42 176.8 112 81.2
Glyma.19G106000 Glycine max HOM05D005263 ORTHO05D006891 1.1e-42 176.8 112 81.2
Lj1g0009319 Lotus japonicus HOM05D005263 ORTHO05D006891 1.4e-42 176.4 112 80.4
HanXRQChr14g0451541 Helianthus annuus HOM05D005263 ORTHO05D006891 2.5e-42 175.6 112 75.0
MSTRG.3034 Avicennia marina HOM05D005263 ORTHO05D006891 7.2e-42 174.1 112 78.6
Lsat_1_v5_gn_2_95241 Lactuca sativa HOM05D005263 ORTHO05D006891 9.4e-42 173.7 112 75.0
Sed0001423 Sechium edule HOM05D005263 ORTHO05D006891 1.2e-41 173.3 112 75.9
Lalb_Chr14g0363581 Lupinus albus HOM05D005263 ORTHO05D006891 2.1e-41 172.6 112 76.8
Psat3g091960 Pisum sativum HOM05D005263 ORTHO05D006891 6.1e-41 171.0 112 75.9
TPR.G26435 Trifolium pratense HOM05D005263 ORTHO05D006891 8.0e-41 170.6 112 78.6
arahy.Tifrunner.gnm1.ann1.J2Y82Q Arachis hypogaea HOM05D005263 ORTHO05D006891 3.0e-40 168.7 112 75.0
arahy.Tifrunner.gnm1.ann1.R16MRH Arachis hypogaea HOM05D005263 ORTHO05D006891 3.9e-40 168.3 112 75.0
HPP92_009765 Vanilla planifolia HOM05D005263 ORTHO05D006891 3.9e-40 168.3 112 75.0
BcaC01g05768 Brassica carinata HOM05D005263 ORTHO05D006891 1.1e-39 166.8 116 75.0
HPP92_009750 Vanilla planifolia HOM05D005263 ORTHO05D006891 1.1e-39 166.8 112 74.1
Nitab4.5_0002901g0080 Nicotiana tabacum HOM05D005263 ORTHO05D006891 2.0e-39 166.0 154 60.4
AagrBONN_evm.TU.Sc2ySwM_117.63 Anthoceros agrestis HOM05D005263 ORTHO05D006891 1.1e-34 150.2 112 66.1
Mapoly0015s0011 Marchantia polymorpha HOM05D005263 ORTHO05D006891 2.8e-30 135.6 112 59.8
CBR_g56393 Chara braunii HOM05D000409 ORTHO05D000184 3.7e-30 135.2 112 58.9
SMO364G0436 Selaginella moellendorffii HOM05D005263 ORTHO05D006891 8.3e-30 134.0 112 59.8
Pp3c2_18110 Physcomitrium patens HOM05D005263 ORTHO05D006891 6.5e-27 124.4 112 59.8
Duzib147G0290 Durio zibethinus HOM05D005263 ORTHO05D006891 2.5e-26 122.5 74 81.1
Oeu048684.2 Olea europaea HOM05D005263 ORTHO05D006891 2.1e-25 119.4 67 86.6
FAN09G0287 Fragaria x ananassa HOM05D005263 ORTHO05D006891 4.0e-24 115.2 67 83.6
FAN09G1249 Fragaria x ananassa HOM05D005263 ORTHO05D006891 6.8e-24 114.4 112 57.1
unitig_52.g17690 Utricularia gibba HOM05D005263 ORTHO05D006891 5.7e-23 111.3 74 74.3
Zm00001eb113530 Zea mays HOM05D005263 ORTHO05D006891 1.7e-22 109.8 85 64.7
SEGI_32569 Sequoiadendron giganteum HOM05D005263 ORTHO05D006891 1.2e-20 103.6 67 74.6
MCO01G164 Micromonas commoda HOM05D005263 ORTHO05D006891 8.9e-16 87.4 113 43.4
PRCOL_00002449 Prasinoderma coloniale HOM05D005236 ORTHO05D006557 2.0e-12 76.3 119 37.8
MCO01G157 Micromonas commoda HOM05D005236 ORTHO05D006557 3.5e-12 75.5 112 41.1
BcaC06g34177 Brassica carinata HOM05D005236 ORTHO05D006557 4.3e-10 68.6 116 34.5
A06p44440 Brassica napus HOM05D005236 ORTHO05D006557 4.3e-10 68.6 116 34.5
C07p31870 Brassica napus HOM05D005236 ORTHO05D006557 4.3e-10 68.6 116 34.5
BolC7t43733H Brassica oleracea HOM05D005236 ORTHO05D006557 4.3e-10 68.6 116 34.5
BraA06t27318Z Brassica rapa HOM05D005236 ORTHO05D006557 4.3e-10 68.6 116 34.5
Sp2g12880 Schrenkiella parvula HOM05D005236 ORTHO05D006557 4.3e-10 68.6 116 35.3
BcaC06g31307 Brassica carinata HOM05D005236 ORTHO05D006557 5.6e-10 68.2 116 35.3
Thhalv10000760m.g Eutrema salsugineum HOM05D005236 ORTHO05D006557 5.6e-10 68.2 116 34.5
Carub.0005s0040 Capsella rubella HOM05D005236 ORTHO05D006557 3.6e-09 65.5 116 33.6
AL5G10420 Arabidopsis lyrata HOM05D005236 ORTHO05D006557 4.7e-09 65.1 116 33.6
AT2G01440 Arabidopsis thaliana HOM05D005236 ORTHO05D006557 4.7e-09 65.1 116 33.6
Mapoly0024s0015 Marchantia polymorpha HOM05D005236 ORTHO05D006557 4.7e-09 65.1 114 36.8
Pp3c19_21980 Physcomitrium patens HOM05D005236 ORTHO05D006557 4.7e-09 65.1 114 36.8
Zm00001eb252400 Zea mays HOM05D005236 ORTHO05D006557 8.0e-09 64.3 115 33.9
AagrBONN_evm.TU.Sc2ySwM_368.2128 Anthoceros agrestis HOM05D005236 ORTHO05D006557 1.0e-08 63.9 114 36.0
Sopen05g003880 Solanum pennellii HOM05D005236 ORTHO05D006557 1.0e-08 63.9 115 33.9
AUR62014143 Chenopodium quinoa HOM05D005236 ORTHO05D006557 1.4e-08 63.5 114 35.1
Solyc05g008040.4 Solanum lycopersicum HOM05D005236 ORTHO05D006557 1.4e-08 63.5 115 33.0
Atru.chr11.574_Atru.chr11.575 Acer truncatum HOM05D005236 ORTHO05D006557 1.8e-08 63.2 135 30.4
Peaxi162Scf00159g00079 Petunia axillaris HOM05D005236 ORTHO05D006557 3.1e-08 62.4 115 33.0
CAN.G1298.25 Capsicum annuum HOM05D005236 ORTHO05D006557 6.8e-08 61.2 115 33.9
Gohir.A03G121000 Gossypium hirsutum HOM05D005236 ORTHO05D006557 8.9e-08 60.8 115 31.3
Gorai.005G161600 Gossypium raimondii HOM05D005236 ORTHO05D006557 8.9e-08 60.8 115 31.3
Nitab4.5_0000742g0190 Nicotiana tabacum HOM05D005236 ORTHO05D006557 8.9e-08 60.8 115 33.0
SMO200G0115 Selaginella moellendorffii HOM05D005236 ORTHO05D006557 8.9e-08 60.8 114 34.2
Duzib251G0654 Durio zibethinus HOM05D005236 ORTHO05D006557 1.2e-07 60.5 115 31.3
Rhsim09G0066900 Rhododendron simsii HOM05D005236 ORTHO05D006557 1.2e-07 60.5 121 31.4
Cre01.g021850 Chlamydomonas reinhardtii HOM05D005236 ORTHO05D006557 1.5e-07 60.1 119 37.8
Gohir.D02G144400 Gossypium hirsutum HOM05D005236 ORTHO05D006557 1.5e-07 60.1 115 31.3
EL10Ac6g14212 Beta vulgaris HOM05D005236 ORTHO05D006557 2.0e-07 59.7 114 31.6
Ciclev10017747m.g Citrus clementina HOM05D005236 ORTHO05D006557 2.6e-07 59.3 116 30.2
ECA246G1132 Erigeron canadensis HOM05D005236 ORTHO05D006557 2.6e-07 59.3 115 32.2
SEGI_39668 Sequoiadendron giganteum HOM05D005263 ORTHO05D006891 2.6e-07 59.3 51 54.9
TWI79G0143 Tripterygium wilfordii HOM05D005236 ORTHO05D006557 2.6e-07 59.3 114 30.7
CSS0043470 Camellia sinensis var. sinensis HOM05D005236 ORTHO05D006557 3.4e-07 58.9 117 32.5
Cpa.g.sc65.143 Carica papaya HOM05D005236 ORTHO05D006557 3.4e-07 58.9 114 32.5
Manes.15G127900 Manihot esculenta HOM05D005236 ORTHO05D006557 3.4e-07 58.9 118 31.4
Migut.L00833 Erythranthe guttata HOM05D005236 ORTHO05D006557 4.4e-07 58.5 115 31.3
HanXRQChr15g0484551 Helianthus annuus HOM05D005236 ORTHO05D006557 4.4e-07 58.5 115 32.2
Oeu003384.3 Olea europaea HOM05D005236 ORTHO05D006557 4.4e-07 58.5 115 30.4
Potri.010G112500 Populus trichocarpa HOM05D005236 ORTHO05D006557 4.4e-07 58.5 116 30.2
Ca_12601_v3 Cicer arietinum L. HOM05D005236 ORTHO05D006557 5.8e-07 58.2 115 31.3
SGA_v2.0_scaffold50G18498 Striga asiatica HOM05D005236 ORTHO05D006557 5.8e-07 58.2 115 32.2
Thecc.02G282100 Theobroma cacao HOM05D005236 ORTHO05D006557 5.8e-07 58.2 120 32.5
unitig_52.g17382 Utricularia gibba HOM05D005236 ORTHO05D006557 5.8e-07 58.2 114 31.6
DCAR_007297 Daucus carota HOM05D005236 ORTHO05D006557 7.5e-07 57.8 115 30.4
Nn4g24162 Nelumbo nucifera HOM05D005236 ORTHO05D006557 7.5e-07 57.8 115 31.3
SGA_v2.0_scaffold274G46524 Striga asiatica HOM05D005263 ORTHO05D006891 7.5e-07 57.8 35 80.0
PSO017G4096 Papaver somniferum HOM05D005236 ORTHO05D006557 9.8e-07 57.4 114 29.8
SalBow8G3693 Salvia bowleyana HOM05D005236 ORTHO05D006557 9.8e-07 57.4 115 31.3
SalBow8G4798 Salvia bowleyana HOM05D005236 ORTHO05D006557 9.8e-07 57.4 115 31.3
ATR0598G134 Amborella trichopoda HOM05D005236 ORTHO05D006557 1.3e-06 57.0 114 31.6
Sc14g0007110 Simmondsia chinensis HOM05D005236 ORTHO05D006557 1.3e-06 57.0 115 32.2
GSVIVG01011753001 Vitis vinifera HOM05D005236 ORTHO05D006557 1.3e-06 57.0 115 29.6
MSTRG.7621 Avicennia marina HOM05D005236 ORTHO05D006557 1.7e-06 56.6 115 30.4
CDE10G0464 Ceratophyllum demersum HOM05D005236 ORTHO05D006557 1.7e-06 56.6 109 30.3
Os02g0710800 Oryza sativa ssp. japonica HOM05D005236 ORTHO05D006557 1.7e-06 56.6 105 30.5
Sed0013091 Sechium edule HOM05D005236 ORTHO05D006557 1.7e-06 56.6 115 30.4
TPR.G36938 Trifolium pratense HOM05D005236 ORTHO05D006557 1.7e-06 56.6 115 30.4
arahy.Tifrunner.gnm1.ann1.KH05JX Arachis hypogaea HOM05D005236 ORTHO05D006557 2.2e-06 56.2 115 31.3
arahy.Tifrunner.gnm1.ann1.X3V98R Arachis hypogaea HOM05D005236 ORTHO05D006557 2.2e-06 56.2 115 31.3
CiPaw.05G250200 Carya illinoinensis HOM05D005236 ORTHO05D006557 2.9e-06 55.8 115 29.6
ClCG07G006520 Citrullus lanatus HOM05D005236 ORTHO05D006557 2.9e-06 55.8 115 30.4
MELO3C018322.2 Cucumis melo HOM05D005236 ORTHO05D006557 2.9e-06 55.8 115 30.4
TAR622G0787 Trochodendron aralioides HOM05D005236 ORTHO05D006557 3.7e-06 55.5 115 30.4
CANSAT64G0788 Cannabis sativa HOM05D005236 ORTHO05D006557 4.9e-06 55.1 115 29.6
FvH4_4g32470 Fragaria vesca HOM05D005236 ORTHO05D006557 4.9e-06 55.1 115 28.7
Glyma.07G164800 Glycine max HOM05D005236 ORTHO05D006557 4.9e-06 55.1 115 30.4
Lsat_1_v5_gn_3_54941 Lactuca sativa HOM05D005236 ORTHO05D006557 4.9e-06 55.1 115 30.4
Lj2g0001419 Lotus japonicus HOM05D005236 ORTHO05D006557 4.9e-06 55.1 137 29.9
FAN17G1995 Fragaria x ananassa HOM05D005236 ORTHO05D006557 6.4e-06 54.7 126 31.0
Lj3C872G3 Lonicera japonica HOM05D005236 ORTHO05D006557 6.4e-06 54.7 115 33.0
CsaV3_5G013670 Cucumis sativus L. HOM05D005236 ORTHO05D006557 8.3e-06 54.3 115 30.4
Lalb_Chr10g0096161 Lupinus albus HOM05D005236 ORTHO05D006557 8.3e-06 54.3 115 29.6


User provided reference genes

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