Gene: COL.COLO4_13398
General Information
Structural Information
- Species Corchorus olitorius
- Gene Identifier COL.COLO4_13398
- Transcript Identifier COL.rna12185
- Gene Type Coding gene
- Location AWUE01015163.1 : 41543-53624 : positive
Gene Family Information
- ID HOM05D005263
- #Genes/#Species 144/92
- Phylogenetic origin
- ID ORTHO05D006891
- #Genes/#Species 137/92
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid rna12185
- GenBank OMO99250.1
- id gene13370
- gene_name COLO4_13398
- uniprot A0A1R3JWS6
Descriptions
- Description hypothetical protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0061025 | IEA | GOA Database | membrane fusion | |
| GO:0015031 | IEA | GOA Database | protein transport | |
| GO:0006886 | IEA | GOA Database | intracellular protein transport | |
| GO:0016192 | IEA | GOA Database | vesicle-mediated transport | |
| GO:0016192 | IEA | InterPro | vesicle-mediated transport |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000166 | IEA | GOA Database | nucleotide binding | |
| GO:0005524 | IEA | GOA Database | ATP binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0003676 | IEA | GOA Database | nucleic acid binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0005484 | IEA | GOA Database | SNAP receptor activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016020 | IEA | GOA Database | membrane | |
| GO:0016020 | IEA | InterPro | membrane | |
| GO:0016021 | IEA | GOA Database | integral component of membrane |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR000727 | Target SNARE coiled-coil homology domain |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR011545 | DEAD/DEAH box helicase domain |
| IPR037235 | TRCF-like, C-terminal D7 domai |
| IPR036101 | CarD-like/TRCF domain superfamily |
| IPR003711 | CarD-like/TRCF domain |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| IPR006904 | Protein of unknown function DUF716 |
| IPR006011 | Syntaxin, N-terminal domain |
| IPR001650 | Helicase, C-terminal |
| IPR010989 | SNARE |
| Mapman id | Description |
|---|---|
| 22.3.5.1.1.2 | Vesicle trafficking.post-Golgi trafficking.target membrane fusion.membrane fusion complexes.Qa-type SNARE components.SYP2-group component |