Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia02208 Actinidia chinensis HOM05D002765 ORTHO05D003083 3.9e-66 254.6 124 100.0
Prupe.8G092500 Prunus persica HOM05D002765 ORTHO05D003083 1.0e-10 70.5 48 68.8
GSVIVG01009758001 Vitis vinifera HOM05D002765 ORTHO05D003083 1.4e-10 70.1 67 56.7
FAN15G2378 Fragaria x ananassa HOM05D002765 ORTHO05D003083 1.8e-10 69.7 48 66.7
FAN20G1188 Fragaria x ananassa HOM05D002765 ORTHO05D003083 1.8e-10 69.7 48 66.7
FAN24G1848 Fragaria x ananassa HOM05D002765 ORTHO05D003083 1.8e-10 69.7 48 66.7
FAN27G0953 Fragaria x ananassa HOM05D002765 ORTHO05D003083 2.3e-10 69.3 48 66.7
MD10G1070700 Malus domestica HOM05D002765 ORTHO05D003083 2.3e-10 69.3 48 66.7
RcHm_v2.0_Chr6g0265641 Rosa chinensis HOM05D002765 ORTHO05D003083 2.3e-10 69.3 48 66.7
GSVIVG01023812001 Vitis vinifera HOM05D002765 ORTHO05D003083 3.0e-10 68.9 67 55.2
Gohir.A01G004300 Gossypium hirsutum HOM05D002765 ORTHO05D003083 4.0e-10 68.6 48 62.5
MBI10_g00763_MAGBIO Magnolia biondii HOM05D002765 ORTHO05D003083 4.0e-10 68.6 48 68.8
MD05G1063200 Malus domestica HOM05D002765 ORTHO05D003083 5.2e-10 68.2 47 66.0
Gohir.A03G196200 Gossypium hirsutum HOM05D002765 ORTHO05D003083 6.8e-10 67.8 49 61.2
Gorai.005G245400 Gossypium raimondii HOM05D002765 ORTHO05D003083 6.8e-10 67.8 49 61.2
Gohir.D01G004300 Gossypium hirsutum HOM05D002765 ORTHO05D003083 8.8e-10 67.4 47 63.8
Gorai.002G005200 Gossypium raimondii HOM05D002765 ORTHO05D003083 8.8e-10 67.4 47 63.8
Peaxi162Scf00286g00232 Petunia axillaris HOM05D002765 ORTHO05D003083 8.8e-10 67.4 51 56.9
arahy.Tifrunner.gnm1.ann1.CTPI3G Arachis hypogaea HOM05D002765 ORTHO05D003083 1.2e-09 67.0 61 57.4
arahy.Tifrunner.gnm1.ann1.H4SBWB Arachis hypogaea HOM05D002765 ORTHO05D003083 1.2e-09 67.0 61 57.4
Dinv36113 Davidia involucrata HOM05D002765 ORTHO05D003083 1.2e-09 67.0 48 66.7
Peaxi162Scf00684g00236 Petunia axillaris HOM05D002765 ORTHO05D003083 1.2e-09 67.0 51 56.9
Potri.009G119200 Populus trichocarpa HOM05D002765 ORTHO05D003083 1.2e-09 67.0 47 63.8
Thecc.02G081400 Theobroma cacao HOM05D002765 ORTHO05D003083 1.2e-09 67.0 41 73.2
Dinv39448 Davidia involucrata HOM05D002765 ORTHO05D003083 1.5e-09 66.6 48 64.6
FvH4_2g09370 Fragaria vesca HOM05D002765 ORTHO05D003083 1.5e-09 66.6 48 64.6
Gohir.D02G217400 Gossypium hirsutum HOM05D002765 ORTHO05D003083 1.5e-09 66.6 49 59.2
Lj5A195T75 Lonicera japonica HOM05D002765 ORTHO05D003083 1.5e-09 66.6 39 82.1
Manes.11G084400 Manihot esculenta HOM05D002765 ORTHO05D003083 1.5e-09 66.6 48 64.6
Potri.004G157400 Populus trichocarpa HOM05D002765 ORTHO05D003083 1.5e-09 66.6 47 63.8
TAR376G0037 Trochodendron aralioides HOM05D002765 ORTHO05D003083 1.5e-09 66.6 37 78.4
vmacro02088 Vaccinium macrocarpon HOM05D002765 ORTHO05D003083 1.5e-09 66.6 48 66.7
CiPaw.05G067600 Carya illinoinensis HOM05D002765 ORTHO05D003083 2.0e-09 66.2 48 66.7
Sabra04G0105200 Salix brachista HOM05D002765 ORTHO05D003083 2.0e-09 66.2 46 65.2
BcaB08g34643 Brassica carinata HOM05D002765 ORTHO05D003083 2.6e-09 65.9 40 70.0
Manes.04G073700 Manihot esculenta HOM05D002765 ORTHO05D003083 2.6e-09 65.9 48 64.6
VMungo1127G0661 Vigna mungo HOM05D002765 ORTHO05D003083 2.6e-09 65.9 49 65.3
Haze_02340 Corylus avellana HOM05D002765 ORTHO05D003083 3.4e-09 65.5 48 64.6
Haze_02346 Corylus avellana HOM05D002765 ORTHO05D003083 3.4e-09 65.5 48 64.6
Lj9C375G10 Lonicera japonica HOM05D002765 ORTHO05D003083 3.4e-09 65.5 48 62.5
Phvul.011G043000 Phaseolus vulgaris HOM05D002765 ORTHO05D003083 3.4e-09 65.5 49 63.3
COL.COLO4_25975 Corchorus olitorius HOM05D002765 ORTHO05D003083 4.4e-09 65.1 49 59.2
Glyma.12G041000 Glycine max HOM05D002765 ORTHO05D003083 4.4e-09 65.1 49 63.3
Rhsim11G0179300 Rhododendron simsii HOM05D002765 ORTHO05D003083 4.4e-09 65.1 48 64.6
Sabra09G0091700 Salix brachista HOM05D002765 ORTHO05D003083 4.4e-09 65.1 47 61.7
Sc18g0004350 Simmondsia chinensis HOM05D002765 ORTHO05D003083 4.4e-09 65.1 40 77.5
CANSAT56G1184 Cannabis sativa HOM05D002765 ORTHO05D003083 5.7e-09 64.7 62 51.6
CARHR106610 Cardamine hirsuta HOM05D002765 ORTHO05D003083 5.7e-09 64.7 40 70.0
Lsat_1_v5_gn_9_108200 Lactuca sativa HOM05D002765 ORTHO05D003083 5.7e-09 64.7 47 63.8
AUR62011293 Chenopodium quinoa HOM05D002765 ORTHO05D003083 7.5e-09 64.3 63 52.4
AUR62014147 Chenopodium quinoa HOM05D002765 ORTHO05D003083 7.5e-09 64.3 63 52.4
Duzib248G0192 Durio zibethinus HOM05D002765 ORTHO05D003083 7.5e-09 64.3 49 59.2
Hma1.2p1_0066F.1_g036210 Hydrangea macrophylla HOM05D002765 ORTHO05D003083 7.5e-09 64.3 37 78.4
Medtr3g117080 Medicago truncatula HOM05D002765 ORTHO05D003083 7.5e-09 64.3 78 41.0
Medtr6g015630 Medicago truncatula HOM05D002765 ORTHO05D003083 7.5e-09 64.3 78 41.0
Nn1g04901 Nelumbo nucifera HOM05D002765 ORTHO05D003083 7.5e-09 64.3 48 62.5
Nitab4.5_0000308g0320 Nicotiana tabacum HOM05D002765 ORTHO05D003083 7.5e-09 64.3 41 68.3
Nitab4.5_0002169g0060 Nicotiana tabacum HOM05D002765 ORTHO05D003083 7.5e-09 64.3 41 68.3
Phvul.009G022100 Phaseolus vulgaris HOM05D002765 ORTHO05D003083 7.5e-09 64.3 49 57.1
PGR042G1739 Punica granatum HOM05D002765 ORTHO05D003083 7.5e-09 64.3 49 63.3
HPP92_004909 Vanilla planifolia HOM05D002765 ORTHO05D003083 7.5e-09 64.3 48 60.4
VMungo1309G2898 Vigna mungo HOM05D002765 ORTHO05D003083 7.5e-09 64.3 49 57.1
Ah.01g019180 Amaranthus hybridus HOM05D003708 ORTHO05D004452 9.8e-09 63.9 40 75.0
CSS0025718 Camellia sinensis var. sinensis HOM05D002765 ORTHO05D003083 9.8e-09 63.9 48 64.6
CSS0034089 Camellia sinensis var. sinensis HOM05D002765 ORTHO05D003083 9.8e-09 63.9 48 64.6
AUR62016765 Chenopodium quinoa HOM05D002765 ORTHO05D003083 9.8e-09 63.9 63 52.4
Glyma.11G115200 Glycine max HOM05D002765 ORTHO05D003083 9.8e-09 63.9 49 61.2
Sed0015701 Sechium edule HOM05D002765 ORTHO05D003083 9.8e-09 63.9 64 50.0
EL10Ac9g21698 Beta vulgaris HOM05D002765 ORTHO05D003083 1.3e-08 63.5 54 63.0
BcaC01g03030 Brassica carinata HOM05D002765 ORTHO05D003083 1.3e-08 63.5 40 70.0
A03p45760 Brassica napus HOM05D002765 ORTHO05D003083 1.3e-08 63.5 40 70.0
C03p56960 Brassica napus HOM05D002765 ORTHO05D003083 1.3e-08 63.5 40 70.0
BolC3t17974H Brassica oleracea HOM05D002765 ORTHO05D003083 1.3e-08 63.5 40 70.0
CSS0009237 Camellia sinensis var. sinensis HOM05D002765 ORTHO05D003083 1.3e-08 63.5 48 62.5
Dinv23496 Davidia involucrata HOM05D002765 ORTHO05D003083 1.3e-08 63.5 40 75.0
PSO384G2851 Papaver somniferum HOM05D002765 ORTHO05D003083 1.3e-08 63.5 48 60.4
MELO3C023314.2 Cucumis melo HOM05D002765 ORTHO05D003083 1.7e-08 63.2 48 60.4
Glyma.04G010800 Glycine max HOM05D002765 ORTHO05D003083 1.7e-08 63.2 49 57.1
Potri.005G230400 Populus trichocarpa HOM05D002765 ORTHO05D003083 1.7e-08 63.2 47 61.7
Actinidia00541 Actinidia chinensis HOM05D003708 ORTHO05D004452 2.2e-08 62.8 48 62.5
Aqoxy6G01173 Aquilegia oxysepala HOM05D002765 ORTHO05D003083 2.2e-08 62.8 54 59.3
arahy.Tifrunner.gnm1.ann1.NI5FH8 Arachis hypogaea HOM05D002765 ORTHO05D003083 2.2e-08 62.8 49 59.2
BraA03t13707Z Brassica rapa HOM05D002765 ORTHO05D003083 2.2e-08 62.8 67 49.3
CAN.G1058.11 Capsicum annuum HOM05D002765 ORTHO05D003083 2.2e-08 62.8 41 68.3
DCAR_003660 Daucus carota HOM05D002765 ORTHO05D003083 2.2e-08 62.8 41 73.2
Thhalv10022646m.g Eutrema salsugineum HOM05D002765 ORTHO05D003083 2.2e-08 62.8 47 59.6
PSO339G1727 Papaver somniferum HOM05D002765 ORTHO05D003083 2.2e-08 62.8 48 58.3
arahy.Tifrunner.gnm1.ann1.FJUP9F Arachis hypogaea HOM05D002765 ORTHO05D003083 2.8e-08 62.4 49 59.2
DCAR_022987 Daucus carota HOM05D002765 ORTHO05D003083 2.8e-08 62.4 49 61.2
Eucgr.A01332 Eucalyptus grandis HOM05D002765 ORTHO05D003083 2.8e-08 62.4 49 59.2
Eucgr.G01624 Eucalyptus grandis HOM05D002765 ORTHO05D003083 2.8e-08 62.4 49 59.2
Hund00199 Selenicereus undatus HOM05D002765 ORTHO05D003083 2.8e-08 62.4 48 62.5
AL3G52520 Arabidopsis lyrata HOM05D002765 ORTHO05D003083 3.7e-08 62.0 40 70.0
CsaV3_2G014940 Cucumis sativus L. HOM05D002765 ORTHO05D003083 3.7e-08 62.0 40 70.0
Lsat_1_v5_gn_2_77700 Lactuca sativa HOM05D000549 ORTHO05D012340 3.7e-08 62.0 75 46.7
Carub.0003s3013 Capsella rubella HOM05D002765 ORTHO05D003083 4.9e-08 61.6 40 67.5
Ciclev10028191m.g Citrus clementina HOM05D002765 ORTHO05D003083 4.9e-08 61.6 39 74.4
Glyma.06G010600 Glycine max HOM05D002765 ORTHO05D003083 4.9e-08 61.6 49 55.1
Manes.18G020100 Manihot esculenta HOM05D002765 ORTHO05D003083 4.9e-08 61.6 36 77.8
Potri.005G230700 Populus trichocarpa HOM05D002765 ORTHO05D003083 4.9e-08 61.6 47 59.6
TAR381G0398 Trochodendron aralioides HOM05D002765 ORTHO05D003083 4.9e-08 61.6 62 51.6
TAR381G1637 Trochodendron aralioides HOM05D002765 ORTHO05D003083 4.9e-08 61.6 62 51.6
CDE06G0797 Ceratophyllum demersum HOM05D002765 ORTHO05D003083 6.3e-08 61.2 42 66.7
Lj3g0027741 Lotus japonicus HOM05D002765 ORTHO05D003083 6.3e-08 61.2 49 59.2
Sp3g29600 Schrenkiella parvula HOM05D002765 ORTHO05D003083 6.3e-08 61.2 40 67.5
Solyc01g109830.3 Solanum lycopersicum HOM05D002765 ORTHO05D003083 6.3e-08 61.2 48 56.2
Sopen01g052030 Solanum pennellii HOM05D002765 ORTHO05D003083 6.3e-08 61.2 48 56.2
Ciclev10002350m.g Citrus clementina HOM05D002765 ORTHO05D003083 8.3e-08 60.8 48 62.5
Lsat_1_v5_gn_4_93741 Lactuca sativa HOM05D002765 ORTHO05D003083 8.3e-08 60.8 47 61.7
Hund00245 Selenicereus undatus HOM05D002765 ORTHO05D003083 8.3e-08 60.8 48 60.4
PGSC0003DMG400000736 Solanum tuberosum HOM05D002765 ORTHO05D003083 8.3e-08 60.8 48 56.2
TPR.G32203 Trifolium pratense HOM05D002765 ORTHO05D003083 8.3e-08 60.8 59 45.8
Actinidia02225 Actinidia chinensis HOM05D002765 ORTHO05D003083 1.1e-07 60.5 145 37.9
Gohir.D05G195000 Gossypium hirsutum HOM05D002765 ORTHO05D003083 1.1e-07 60.5 53 58.5
Lalb_Chr23g0265261 Lupinus albus HOM05D002765 ORTHO05D003083 1.1e-07 60.5 47 57.4
HanXRQChr03g0073361 Helianthus annuus HOM05D002765 ORTHO05D003083 1.4e-07 60.1 40 65.0
HanXRQChr13g0426581 Helianthus annuus HOM05D002765 ORTHO05D003083 1.4e-07 60.1 40 65.0
QL11p044277 Quercus lobata HOM05D002765 ORTHO05D003083 1.4e-07 60.1 48 56.2
AT2G16370 Arabidopsis thaliana HOM05D002765 ORTHO05D003083 1.8e-07 59.7 37 64.9
CiPaw.06G133700 Carya illinoinensis HOM05D002765 ORTHO05D003083 1.8e-07 59.7 37 70.3
AUR62025833 Chenopodium quinoa HOM05D002765 ORTHO05D003083 1.8e-07 59.7 48 54.2
ECA240G4482 Erigeron canadensis HOM05D002765 ORTHO05D003083 1.8e-07 59.7 40 65.0
Gorai.009G199800 Gossypium raimondii HOM05D000394 ORTHO05D000299 1.8e-07 59.7 37 73.0
Nn5g29690 Nelumbo nucifera HOM05D002765 ORTHO05D003083 1.8e-07 59.7 48 58.3
QL02p009415 Quercus lobata HOM05D002765 ORTHO05D003083 1.8e-07 59.7 48 60.4
Sabra08G0044200 Salix brachista HOM05D002357 ORTHO05D002676 1.8e-07 59.7 47 57.4
AT4G34570 Arabidopsis thaliana HOM05D002765 ORTHO05D003083 2.4e-07 59.3 40 67.5
MSTRG.24279 Avicennia marina HOM05D002765 ORTHO05D003083 2.4e-07 59.3 48 58.3
CARHR242830 Cardamine hirsuta HOM05D002765 ORTHO05D003083 2.4e-07 59.3 47 55.3
Duzib093G1417 Durio zibethinus HOM05D000394 ORTHO05D000299 2.4e-07 59.3 38 65.8
Lalb_Chr23g0265341 Lupinus albus HOM05D002765 ORTHO05D003083 2.4e-07 59.3 47 55.3
SHI05548 Sapria himalayana HOM05D002765 ORTHO05D003083 2.4e-07 59.3 59 50.8
SGA_v2.0_scaffold162G37878 Striga asiatica HOM05D002765 ORTHO05D003083 2.4e-07 59.3 42 66.7
TWI79G0568 Tripterygium wilfordii HOM05D002765 ORTHO05D003083 2.4e-07 59.3 47 55.3
ATR0585G086 Amborella trichopoda HOM05D002765 ORTHO05D003083 3.1e-07 58.9 48 56.2
AL7G16640 Arabidopsis lyrata HOM05D002765 ORTHO05D003083 3.1e-07 58.9 40 65.0
CiPaw.07G158200 Carya illinoinensis HOM05D002765 ORTHO05D003083 3.1e-07 58.9 47 57.4
Ca_15355_v3 Cicer arietinum L. HOM05D002765 ORTHO05D003083 3.1e-07 58.9 59 44.1
ECA234G0444 Erigeron canadensis HOM05D002765 ORTHO05D003083 3.1e-07 58.9 40 67.5
Thhalv10024973m.g Eutrema salsugineum HOM05D002765 ORTHO05D003083 3.1e-07 58.9 42 59.5
Thecc.08G032100 Theobroma cacao HOM05D002765 ORTHO05D003083 3.1e-07 58.9 48 56.2
Lsat_1_v5_gn_5_119401 Lactuca sativa HOM05D002765 ORTHO05D003083 4.1e-07 58.5 70 42.9
Nn3g20068 Nelumbo nucifera HOM05D002765 ORTHO05D003083 4.1e-07 58.5 55 50.9
Migut.N00482 Erythranthe guttata HOM05D002765 ORTHO05D003083 5.4e-07 58.2 42 61.9
Gohir.A05G191700 Gossypium hirsutum HOM05D002765 ORTHO05D003083 5.4e-07 58.2 37 70.3
Lj4C789G13 Lonicera japonica HOM05D002765 ORTHO05D003083 5.4e-07 58.2 36 75.0
Oeu002822.1 Olea europaea HOM05D002765 ORTHO05D003083 5.4e-07 58.2 47 57.4
Sed0012060 Sechium edule HOM05D002765 ORTHO05D003083 5.4e-07 58.2 37 67.6
arahy.Tifrunner.gnm1.ann1.P4FFBW Arachis hypogaea HOM05D002765 ORTHO05D003083 7.0e-07 57.8 49 53.1
Haze_22539 Corylus avellana HOM05D000394 ORTHO05D000299 7.0e-07 57.8 75 44.0
THA.LOC104819616 Tarenaya hassleriana HOM05D002765 ORTHO05D003083 7.0e-07 57.8 40 62.5
Ah.05g176920 Amaranthus hybridus HOM05D002765 ORTHO05D003083 9.2e-07 57.4 48 47.9
arahy.Tifrunner.gnm1.ann1.1CC5AH Arachis hypogaea HOM05D002765 ORTHO05D003083 9.2e-07 57.4 49 55.1
CDE02G2512 Ceratophyllum demersum HOM05D002765 ORTHO05D003083 9.2e-07 57.4 38 65.8
Cc09_g07220 Coffea canephora HOM05D002765 ORTHO05D003083 9.2e-07 57.4 47 55.3
Lalb_Chr19g0138791 Lupinus albus HOM05D002765 ORTHO05D003083 9.2e-07 57.4 73 45.2
Medtr4g070670 Medicago truncatula HOM05D002765 ORTHO05D003083 9.2e-07 57.4 38 65.8
Oeu003733.1 Olea europaea HOM05D002765 ORTHO05D003083 9.2e-07 57.4 64 45.3
Oeu055605.2 Olea europaea HOM05D002765 ORTHO05D003083 9.2e-07 57.4 64 45.3
Psat0s3397g0080 Pisum sativum HOM05D002765 ORTHO05D003083 9.2e-07 57.4 49 53.1
TWI31G0187 Tripterygium wilfordii HOM05D002765 ORTHO05D003083 9.2e-07 57.4 40 62.5
Aa31LG2G15950 Aethionema arabicum HOM05D002765 ORTHO05D003083 1.2e-06 57.0 40 67.5
Aqoxy6G03012 Aquilegia oxysepala HOM05D002765 ORTHO05D003083 1.2e-06 57.0 49 55.1
Cfa013865 Carpinus fangiana HOM05D002765 ORTHO05D003083 1.2e-06 57.0 48 58.3
Nitab4.5_0014191g0010 Nicotiana tabacum HOM05D002765 ORTHO05D003083 1.2e-06 57.0 38 57.9
Psat7g182040 Pisum sativum HOM05D002765 ORTHO05D003083 1.6e-06 56.6 41 61.0
Atru.chr5.3060 Acer truncatum HOM05D002765 ORTHO05D003083 2.0e-06 56.2 40 65.0
SEGI_28399 Sequoiadendron giganteum HOM05D002765 ORTHO05D003083 2.0e-06 56.2 49 53.1
TPR.G30521 Trifolium pratense HOM05D002765 ORTHO05D003083 2.0e-06 56.2 41 61.0
COL.COLO4_26256 Corchorus olitorius HOM05D000394 ORTHO05D000299 2.7e-06 55.8 37 67.6
HanXRQChr15g0486871 Helianthus annuus HOM05D002765 ORTHO05D003083 3.5e-06 55.5 54 50.0
Lj1g0022223 Lotus japonicus HOM05D002765 ORTHO05D003083 3.5e-06 55.5 48 54.2
CANSAT01G2658 Cannabis sativa HOM05D002765 ORTHO05D003083 4.5e-06 55.1 35 71.4
Ca_20903_v3 Cicer arietinum L. HOM05D002765 ORTHO05D003083 4.5e-06 55.1 41 58.5
Zm00001eb169580 Zea mays HOM05D002765 ORTHO05D003083 4.5e-06 55.1 60 46.7
Cc10_g02530 Coffea canephora HOM05D002765 ORTHO05D003083 5.9e-06 54.7 48 56.2
Thhalv10000156m.g Eutrema salsugineum HOM05D002765 ORTHO05D003083 5.9e-06 54.7 69 40.6
Os11g0484400 Oryza sativa ssp. japonica HOM05D002765 ORTHO05D003083 5.9e-06 54.7 40 57.5
Os12g0446900 Oryza sativa ssp. japonica HOM05D002765 ORTHO05D003083 5.9e-06 54.7 40 57.5
Sp7g32360 Schrenkiella parvula HOM05D002765 ORTHO05D003083 5.9e-06 54.7 40 60.0
EL10Ac1g00632 Beta vulgaris HOM05D002765 ORTHO05D003083 7.7e-06 54.3 46 52.2
EL10Ac1g00634 Beta vulgaris HOM05D002765 ORTHO05D003083 7.7e-06 54.3 46 52.2
A01p03920 Brassica napus HOM05D002765 ORTHO05D003083 7.7e-06 54.3 40 52.5


User provided reference genes

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