Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 0.0e+00 1250.3 636 100.0
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 7.4e-286 986.9 637 80.8
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 2.1e-272 942.2 619 79.2
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 7.4e-270 933.7 632 76.3
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 3.0e-247 858.6 646 70.0
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 9.8e-246 853.6 627 72.2
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 1.2e-240 836.6 641 67.7
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 4.7e-240 834.7 633 67.9
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 2.2e-237 825.9 629 69.3
Actinidia14552 Actinidia chinensis HOM05D004635 ORTHO05D005899 3.5e-235 818.5 641 72.1
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 1.7e-234 816.2 628 67.7
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 6.6e-234 814.3 628 68.8
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 1.9e-233 812.8 633 67.9
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 2.0e-230 802.7 627 65.9
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 3.4e-230 802.0 609 70.0
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 4.9e-229 798.1 627 66.5
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 6.4e-229 797.7 627 66.5
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 2.4e-228 795.8 627 66.3
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 9.2e-228 793.9 631 66.6
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 2.0e-227 792.7 631 66.1
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 2.7e-227 792.3 603 68.0
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 7.8e-227 790.8 633 64.8
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 1.7e-226 789.6 603 67.8
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 4.3e-225 785.0 628 65.4
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 1.2e-224 783.5 636 65.4
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 2.1e-224 782.7 634 65.5
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 1.4e-223 780.0 634 65.9
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 1.8e-223 779.6 633 65.6
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 1.5e-222 776.5 636 64.9
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 1.5e-222 776.5 642 64.8
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 3.4e-222 775.4 626 66.3
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 9.8e-222 773.9 605 66.1
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 1.3e-221 773.5 627 65.9
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 3.7e-221 771.9 633 66.0
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 3.7e-221 771.9 643 64.7
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 6.4e-221 771.2 604 66.2
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 8.3e-221 770.8 634 66.1
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 1.4e-220 770.0 630 64.4
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 1.9e-220 769.6 627 66.0
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 1.3e-218 763.5 643 63.1
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 1.5e-217 760.0 601 65.4
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 2.1e-216 756.1 601 65.2
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.4e-215 753.4 633 64.3
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 1.8e-215 753.1 639 63.2
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 2.3e-215 752.7 641 63.2
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 3.1e-215 752.3 601 64.9
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 6.8e-215 751.1 633 64.1
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 8.9e-215 750.7 633 64.1
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.2e-214 750.4 633 64.1
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.0e-214 749.6 632 63.4
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 1.4e-212 743.4 644 64.0
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 5.4e-212 741.5 629 62.0
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 5.4e-212 741.5 629 63.0
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 9.2e-212 740.7 631 61.2
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 2.7e-211 739.2 645 63.1
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 1.7e-210 736.5 635 63.1
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 3.0e-210 735.7 640 63.3
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 3.0e-210 735.7 636 64.2
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 2.5e-209 732.6 629 61.4
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 1.2e-208 730.3 639 61.2
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 2.8e-208 729.2 630 61.7
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 2.8e-208 729.2 647 61.8
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 2.8e-208 729.2 641 61.9
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 6.2e-208 728.0 631 62.3
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 4.0e-207 725.3 634 59.8
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 5.2e-207 724.9 631 62.6
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 6.4e-205 718.0 633 61.8
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 8.4e-205 717.6 633 63.2
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 8.4e-205 717.6 631 62.4
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 1.4e-204 716.8 629 62.5
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 1.4e-204 716.8 630 59.8
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 1.9e-204 716.5 621 61.2
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 4.1e-204 715.3 629 62.0
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 5.4e-204 714.9 628 60.5
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 7.8e-203 711.1 620 60.8
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 7.8e-203 711.1 642 60.4
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 8.1e-200 701.0 621 61.2
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 8.1e-200 701.0 631 58.8
Aa31LG9G660 Aethionema arabicum HOM05D004635 ORTHO05D005899 3.1e-199 699.1 629 60.6
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 2.0e-198 696.4 621 60.4
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 9.9e-198 694.1 627 59.3
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 3.8e-197 692.2 629 60.9
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 1.9e-196 689.9 627 59.8
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 5.4e-196 688.3 629 61.2
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 1.6e-195 686.8 601 60.6
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 2.1e-195 686.4 633 59.2
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 7.8e-195 684.5 626 58.8
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 5.6e-193 678.3 629 58.7
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 5.6e-193 678.3 629 58.7
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 7.6e-190 667.9 641 58.2
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 2.9e-189 666.0 637 59.2
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 5.4e-188 661.8 627 59.2
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 7.1e-188 661.4 561 63.1
ATR0064G111 Amborella trichopoda HOM05D004635 ORTHO05D005899 2.5e-185 652.9 634 57.3
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 2.5e-185 652.9 633 56.4
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 1.6e-184 650.2 633 56.1
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 1.6e-184 650.2 633 56.1
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 4.8e-184 648.7 625 56.6
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 2.6e-182 642.9 633 56.1
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 9.9e-182 641.0 633 55.9
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 9.3e-180 634.4 631 55.6
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 7.9e-179 631.3 630 54.6
CiPaw.11G137400 Carya illinoinensis HOM05D004635 ORTHO05D005899 2.1e-176 623.2 552 63.0
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 6.2e-176 621.7 530 64.2
Glyma.05G206400 Glycine max HOM05D004635 ORTHO05D005899 4.3e-169 599.0 554 59.0
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 1.7e-165 587.0 628 53.2
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 2.9e-165 586.3 636 51.7
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 3.9e-162 575.9 632 51.7
Oeu011058.1 Olea europaea HOM05D004635 ORTHO05D005899 8.2e-160 568.2 645 52.2
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 7.7e-158 561.6 650 51.1
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 4.1e-151 539.3 663 46.9
Os02g0114700 Oryza sativa ssp. japonica HOM05D004635 ORTHO05D005899 2.9e-149 533.1 614 48.9
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 3.8e-149 532.7 534 53.9
Zm00001eb209610 Zea mays HOM05D004635 ORTHO05D005899 1.1e-143 514.6 629 46.4
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 1.4e-143 514.2 483 59.8
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 3.8e-141 506.1 634 47.5
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 1.3e-136 491.1 643 46.5
RcHm_v2.0_Chr7g0211921 Rosa chinensis HOM05D004635 ORTHO05D005899 3.5e-134 483.0 402 65.7
Dinv37658 Davidia involucrata HOM05D004635 ORTHO05D005899 1.0e-130 471.5 338 74.0
Zm00001eb229850 Zea mays HOM05D004635 ORTHO05D005899 4.0e-122 443.0 526 47.5
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 3.5e-118 429.9 542 48.7
Carub.0004s0410 Capsella rubella HOM05D004635 ORTHO05D005899 7.3e-116 422.2 535 49.0
Migut.A00784 Erythranthe guttata HOM05D004635 ORTHO05D005899 1.8e-114 417.5 453 54.3
Pp3c2_34320 Physcomitrium patens HOM05D004635 ORTHO05D005899 5.6e-108 396.0 666 41.0
Dinv37657 Davidia involucrata HOM05D004635 ORTHO05D005899 9.8e-105 385.2 240 79.6
C06p19650 Brassica napus HOM05D004635 ORTHO05D005899 8.6e-101 372.1 443 48.3
AagrBONN_evm.TU.Sc2ySwM_362.355 Anthoceros agrestis HOM05D004635 ORTHO05D005899 5.6e-100 369.4 680 37.9
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 9.8e-97 358.6 395 54.4
FAN28G2416 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.7e-96 357.8 385 54.5
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 6.4e-96 355.9 460 46.5
SMO171G0086 Selaginella moellendorffii HOM05D004635 ORTHO05D005899 2.7e-86 323.9 605 35.9
BolC6t37157H Brassica oleracea HOM05D004635 ORTHO05D005899 1.1e-82 312.0 290 56.2
BolC6t37158H Brassica oleracea HOM05D004635 ORTHO05D005899 7.3e-76 289.3 244 61.1
Mapoly0033s0014 Marchantia polymorpha HOM05D004635 ORTHO05D005899 1.7e-72 278.1 576 34.7
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 3.0e-69 267.3 360 46.1
BolC9t58686H Brassica oleracea HOM05D004635 ORTHO05D005899 1.1e-68 265.4 360 45.6
RcHm_v2.0_Chr7g0211961 Rosa chinensis HOM05D004635 ORTHO05D005899 1.8e-66 258.1 203 64.0
C09p58220 Brassica napus HOM05D000111 ORTHO05D000134 1.2e-65 255.4 360 45.0
CBR_g50931 Chara braunii HOM05D004635 ORTHO05D005899 8.4e-64 249.2 773 29.2
BcaC08g44514 Brassica carinata HOM05D004635 ORTHO05D005899 7.6e-57 226.1 145 70.3
C06p19660 Brassica napus HOM05D004635 ORTHO05D005899 1.9e-44 184.9 154 61.7
QL12p018319 Quercus lobata HOM05D004635 ORTHO05D005899 1.7e-43 181.8 408 37.0
MCO14G249 Micromonas commoda HOM05D004635 ORTHO05D005899 3.1e-42 177.6 606 28.9
PRCOL_00006831 Prasinoderma coloniale HOM05D004635 ORTHO05D005899 4.2e-39 167.2 593 26.8
VMungo1127G2192 Vigna mungo HOM05D004635 ORTHO05D005899 4.7e-38 163.7 165 50.9
Cre01.g031750 Chlamydomonas reinhardtii HOM05D004635 ORTHO05D005899 1.1e-34 152.5 541 29.0
BcaC08g44517 Brassica carinata HOM05D004635 ORTHO05D005899 1.0e-29 136.0 248 39.9
Solyc12g015770.3 Solanum lycopersicum HOM05D000074 ORTHO05D001262 7.2e-23 113.2 60 86.7
Lj2C188G13 Lonicera japonica HOM05D004635 ORTHO05D005899 3.0e-21 107.8 86 61.6
EL10Ac8g19215 Beta vulgaris HOM05D000238 ORTHO05D001043 3.7e-19 100.9 96 54.2
Lj2C188G12 Lonicera japonica HOM05D004635 ORTHO05D005899 3.2e-15 87.8 240 33.3
EL10Ac5g10794 Beta vulgaris HOM05D004635 ORTHO05D005899 1.4e-13 82.4 91 58.2
AL4G15290 Arabidopsis lyrata HOM05D004635 ORTHO05D079484 9.1e-10 69.7 68 58.8
arahy.Tifrunner.gnm1.ann1.CCN99U Arachis hypogaea HOM05D004635 ORTHO05D085572 2.5e-07 61.6 46 71.7
SGA_v2.0_scaffold48G17990 Striga asiatica HOM05D004635 ORTHO05D405620 4.2e-07 60.8 71 49.3
Sopen12g007660 Solanum pennellii HOM05D000006 ORTHO05D000695 2.1e-06 58.5 40 67.5


User provided reference genes

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