Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AagrBONN_evm.TU.Sc2ySwM_344.2693 Anthoceros agrestis HOM05D004344 ORTHO05D021344 1.1e-147 526.6 265 100.0
AagrBONN_evm.TU.Sc2ySwM_344.2703__2704 Anthoceros agrestis HOM05D004344 ORTHO05D006026 1.7e-63 246.9 249 60.6
Mapoly0074s0003 Marchantia polymorpha HOM05D004344 ORTHO05D006026 2.4e-41 173.3 244 45.1
SMO144G0147 Selaginella moellendorffii HOM05D004344 ORTHO05D006026 2.4e-36 156.8 252 40.5
SEGI_39908 Sequoiadendron giganteum HOM05D004344 ORTHO05D006026 3.4e-35 152.9 175 50.9
SEGI_30504 Sequoiadendron giganteum HOM05D004344 ORTHO05D006026 4.5e-35 152.5 175 50.9
Pp3c1_21120 Physcomitrium patens HOM05D004344 ORTHO05D006026 4.9e-34 149.1 168 50.6
Lsat_1_v5_gn_2_84960 Lactuca sativa HOM05D004344 ORTHO05D006026 5.5e-33 145.6 169 46.7
CANSAT01G0155 Cannabis sativa HOM05D004344 ORTHO05D006026 9.3e-33 144.8 169 47.3
CsaV3_2G016500 Cucumis sativus L. HOM05D004344 ORTHO05D006026 1.2e-32 144.4 169 46.2
VMungo1215G1933 Vigna mungo HOM05D004344 ORTHO05D006026 2.1e-32 143.7 243 39.1
Phvul.002G017900 Phaseolus vulgaris HOM05D004344 ORTHO05D006026 1.3e-31 141.0 169 45.6
Sed0002898 Sechium edule HOM05D004344 ORTHO05D006026 1.3e-31 141.0 171 45.6
Sopen02g037860 Solanum pennellii HOM05D004344 ORTHO05D006026 1.3e-31 141.0 169 45.6
arahy.Tifrunner.gnm1.ann1.KW6QS2 Arachis hypogaea HOM05D004344 ORTHO05D006026 1.8e-31 140.6 174 46.6
Potri.007G045300 Populus trichocarpa HOM05D004344 ORTHO05D006026 2.3e-31 140.2 168 45.2
Dinv26836 Davidia involucrata HOM05D004344 ORTHO05D006026 3.0e-31 139.8 169 43.8
Ca_24759_v3 Cicer arietinum L. HOM05D004344 ORTHO05D006026 3.9e-31 139.4 171 46.2
MELO3C020860.2 Cucumis melo HOM05D004344 ORTHO05D006026 3.9e-31 139.4 171 46.2
Solyc02g093300.3 Solanum lycopersicum HOM05D004344 ORTHO05D006026 3.9e-31 139.4 169 45.0
HanXRQChr14g0449061 Helianthus annuus HOM05D004344 ORTHO05D006026 6.7e-31 138.7 169 46.7
QL06p040994 Quercus lobata HOM05D004344 ORTHO05D006026 8.7e-31 138.3 188 43.1
Sabra07G0040300 Salix brachista HOM05D004344 ORTHO05D006026 8.7e-31 138.3 168 45.2
CiPaw.01G016700 Carya illinoinensis HOM05D004344 ORTHO05D006026 1.1e-30 137.9 169 44.4
FvH4_1g22730 Fragaria vesca HOM05D004344 ORTHO05D006026 1.1e-30 137.9 169 45.0
FAN23G1634 Fragaria x ananassa HOM05D004344 ORTHO05D006026 1.1e-30 137.9 169 45.0
ECA238G4385 Erigeron canadensis HOM05D004344 ORTHO05D006026 1.5e-30 137.5 169 44.4
FAN19G2019 Fragaria x ananassa HOM05D004344 ORTHO05D006026 1.5e-30 137.5 169 45.0
TPR.G26904 Trifolium pratense HOM05D004344 ORTHO05D006026 1.5e-30 137.5 171 46.8
VMungo0464G2085 Vigna mungo HOM05D004344 ORTHO05D006026 1.5e-30 137.5 243 39.1
ClCG02G012370 Citrullus lanatus HOM05D004344 ORTHO05D006026 1.9e-30 137.1 171 45.0
Haze_15381 Corylus avellana HOM05D004344 ORTHO05D006026 1.9e-30 137.1 188 42.0
Lalb_Chr09g0323231 Lupinus albus HOM05D004344 ORTHO05D006026 1.9e-30 137.1 242 38.4
RcHm_v2.0_Chr2g0117021 Rosa chinensis HOM05D004344 ORTHO05D006026 1.9e-30 137.1 169 44.4
Cc07_g06110 Coffea canephora HOM05D004344 ORTHO05D006026 2.5e-30 136.7 249 37.3
Cpa.g.sc55.134 Carica papaya HOM05D004344 ORTHO05D006026 3.3e-30 136.3 245 39.6
Thecc.01G058600 Theobroma cacao HOM05D004344 ORTHO05D006026 3.3e-30 136.3 169 42.0
MSTRG.23740 Avicennia marina HOM05D004344 ORTHO05D006026 5.7e-30 135.6 169 45.6
FAN26G0646 Fragaria x ananassa HOM05D004344 ORTHO05D006026 5.7e-30 135.6 168 43.5
Gorai.007G214600 Gossypium raimondii HOM05D004344 ORTHO05D006026 5.7e-30 135.6 169 42.0
TPR.G16152 Trifolium pratense HOM05D004344 ORTHO05D006026 7.4e-30 135.2 171 46.2
Hma1.2p1_0017F.1_g011490 Hydrangea macrophylla HOM05D004344 ORTHO05D006026 9.6e-30 134.8 170 45.3
Oeu020531.3 Olea europaea HOM05D004344 ORTHO05D006026 9.6e-30 134.8 175 46.9
TWI09G1157 Tripterygium wilfordii HOM05D004344 ORTHO05D006026 9.6e-30 134.8 188 42.0
Zm00001eb146610 Zea mays HOM05D004344 ORTHO05D006026 1.3e-29 134.4 169 44.4
Actinidia12045 Actinidia chinensis HOM05D004344 ORTHO05D006026 1.6e-29 134.0 170 44.1
Cfa004033 Carpinus fangiana HOM05D004344 ORTHO05D006026 1.6e-29 134.0 188 43.1
Gohir.D11G200300 Gossypium hirsutum HOM05D004344 ORTHO05D006026 1.6e-29 134.0 169 42.0
Hma1.2p1_0017F.1_g011500 Hydrangea macrophylla HOM05D004344 ORTHO05D006026 2.1e-29 133.7 173 45.1
Manes.13G122900 Manihot esculenta HOM05D004344 ORTHO05D006026 2.1e-29 133.7 169 42.6
Medtr5g017070 Medicago truncatula HOM05D004344 ORTHO05D006026 2.1e-29 133.7 171 45.6
Os01g0868300 Oryza sativa ssp. japonica HOM05D004344 ORTHO05D006026 2.1e-29 133.7 169 45.6
Glyma.01G187400 Glycine max HOM05D004344 ORTHO05D006026 2.8e-29 133.3 169 45.0
Gohir.A11G193200 Gossypium hirsutum HOM05D004344 ORTHO05D006026 2.8e-29 133.3 169 42.0
Atru.chr3.306 Acer truncatum HOM05D004344 ORTHO05D006026 3.7e-29 132.9 169 42.6
CSS0049451 Camellia sinensis var. sinensis HOM05D004344 ORTHO05D006026 3.7e-29 132.9 170 42.9
TAR376G0722 Trochodendron aralioides HOM05D004344 ORTHO05D006026 4.8e-29 132.5 169 42.6
PGR102G1820 Punica granatum HOM05D004344 ORTHO05D006026 6.2e-29 132.1 169 44.4
Peaxi162Scf00450g00127 Petunia axillaris HOM05D004344 ORTHO05D006026 8.2e-29 131.7 176 44.9
Ciclev10024699m.g Citrus clementina HOM05D004344 ORTHO05D006026 1.1e-28 131.3 169 43.8
Migut.H00422 Erythranthe guttata HOM05D004344 ORTHO05D006026 1.1e-28 131.3 168 44.6
Psat2g166640 Pisum sativum HOM05D004344 ORTHO05D006026 1.8e-28 130.6 171 44.4
Prupe.7G131600 Prunus persica HOM05D004344 ORTHO05D006026 5.3e-28 129.0 169 42.6
Aqoxy7G02851 Aquilegia oxysepala HOM05D004344 ORTHO05D006026 6.9e-28 128.6 171 42.7
CBR_g30807 Chara braunii HOM05D000019 ORTHO05D000048 9.0e-28 128.3 169 43.8
Lj2g0014817 Lotus japonicus HOM05D004344 ORTHO05D006026 1.2e-27 127.9 243 38.3
Lj3g0019632 Lotus japonicus HOM05D004344 ORTHO05D006026 1.2e-27 127.9 244 36.1
Nn5g30338 Nelumbo nucifera HOM05D004344 ORTHO05D006026 1.2e-27 127.9 169 42.0
Sc03g0001670 Simmondsia chinensis HOM05D004344 ORTHO05D006026 1.2e-27 127.9 169 41.4
unitig_899.g14946 Utricularia gibba HOM05D004344 ORTHO05D006026 1.5e-27 127.5 171 42.7
arahy.Tifrunner.gnm1.ann1.7M3CIR Arachis hypogaea HOM05D004344 ORTHO05D006026 2.0e-27 127.1 198 40.9
arahy.Tifrunner.gnm1.ann1.EE0YL2 Arachis hypogaea HOM05D004344 ORTHO05D006026 3.4e-27 126.3 167 44.9
Lj7C70T9 Lonicera japonica HOM05D004344 ORTHO05D006026 3.4e-27 126.3 160 43.8
PSO541G2052 Papaver somniferum HOM05D004344 ORTHO05D006026 1.3e-26 124.4 170 42.4
Rhsim10G0115900 Rhododendron simsii HOM05D004344 ORTHO05D006026 2.2e-26 123.6 185 41.6
HPP92_025047 Vanilla planifolia HOM05D004344 ORTHO05D006026 2.2e-26 123.6 169 44.4
Eucgr.H01686 Eucalyptus grandis HOM05D004344 ORTHO05D006026 3.8e-26 122.9 171 41.5
PSO675G1845 Papaver somniferum HOM05D004344 ORTHO05D006026 6.5e-26 122.1 169 40.2
AUR62003893 Chenopodium quinoa HOM05D004344 ORTHO05D006026 8.4e-26 121.7 177 37.9
vmacro05947 Vaccinium macrocarpon HOM05D004344 ORTHO05D006026 8.4e-26 121.7 172 43.0
ATR0584G066 Amborella trichopoda HOM05D004344 ORTHO05D006026 1.1e-25 121.3 171 44.4
DCAR_025744 Daucus carota HOM05D004344 ORTHO05D006026 1.4e-25 120.9 173 43.4
THA.LOC104827210 Tarenaya hassleriana HOM05D004344 ORTHO05D006026 1.4e-25 120.9 188 38.8
COL.COLO4_11441 Corchorus olitorius HOM05D004344 ORTHO05D006026 1.9e-25 120.6 202 36.6
SGA_v2.0_scaffold15G07321 Striga asiatica HOM05D004344 ORTHO05D006026 2.5e-25 120.2 173 42.8
SGA_v2.0_scaffold46G17397 Striga asiatica HOM05D004344 ORTHO05D006026 2.5e-25 120.2 169 42.6
AUR62001915 Chenopodium quinoa HOM05D004344 ORTHO05D006026 3.2e-25 119.8 170 40.0
GSVIVG01022113001 Vitis vinifera HOM05D004344 ORTHO05D006026 5.5e-25 119.0 165 42.4
Nitab4.5_0003519g0040 Nicotiana tabacum HOM05D004344 ORTHO05D006026 1.2e-24 117.9 169 41.4
EL10Ac6g15730 Beta vulgaris HOM05D004344 ORTHO05D006026 4.6e-24 115.9 121 50.4
MD15G1285400 Malus domestica HOM05D004344 ORTHO05D006026 4.6e-24 115.9 188 38.8
CAN.G370.49 Capsicum annuum HOM05D004344 ORTHO05D006026 6.1e-24 115.5 151 42.4
AT5G67100 Arabidopsis thaliana HOM05D004344 ORTHO05D006026 7.9e-24 115.2 169 42.0
Nitab4.5_0002029g0030 Nicotiana tabacum HOM05D004344 ORTHO05D006026 1.0e-23 114.8 169 41.4
SMO335G0007 Selaginella moellendorffii HOM05D004344 ORTHO05D021344 2.3e-23 113.6 136 48.5
BcaC06g34790 Brassica carinata HOM05D004344 ORTHO05D006026 8.7e-23 111.7 188 39.9
C07p24670 Brassica napus HOM05D004344 ORTHO05D006026 8.7e-23 111.7 188 39.9
A07p16860 Brassica napus HOM05D004344 ORTHO05D006026 1.1e-22 111.3 188 39.9
Carub.0008s2741 Capsella rubella HOM05D004344 ORTHO05D006026 1.1e-22 111.3 169 42.6
CARHR280550 Cardamine hirsuta HOM05D004344 ORTHO05D006026 4.3e-22 109.4 169 41.4
CDE04G1072 Ceratophyllum demersum HOM05D004344 ORTHO05D006026 5.7e-22 109.0 139 42.4
MCO16G420 Micromonas commoda HOM05D004344 ORTHO05D006026 1.3e-21 107.8 175 42.9
Sp2g29580 Schrenkiella parvula HOM05D004344 ORTHO05D006026 1.3e-21 107.8 169 40.2
BraA02t08352Z Brassica rapa HOM05D004344 ORTHO05D006026 2.2e-21 107.1 242 37.2
AL8G20700 Arabidopsis lyrata HOM05D004344 ORTHO05D006026 2.8e-21 106.7 171 42.1
Carub.0008s0466 Capsella rubella HOM05D004344 ORTHO05D006026 2.8e-21 106.7 171 42.1
Thhalv10003515m.g Eutrema salsugineum HOM05D004344 ORTHO05D006026 3.7e-21 106.3 169 41.4
Aa31LG1G15620 Aethionema arabicum HOM05D004344 ORTHO05D006026 4.8e-21 105.9 178 41.0
C02p51210 Brassica napus HOM05D004344 ORTHO05D006026 4.1e-20 102.8 241 36.1
BolC2t11212H Brassica oleracea HOM05D004344 ORTHO05D006026 9.0e-20 101.7 169 39.6
CARHR066690 Cardamine hirsuta HOM05D004344 ORTHO05D006026 2.6e-19 100.1 171 40.9
Ah.03g145340 Amaranthus hybridus HOM05D004344 ORTHO05D006026 3.4e-19 99.8 163 36.2
AL8G22110 Arabidopsis lyrata HOM05D004344 ORTHO05D006026 7.7e-19 98.6 171 39.2
Duzib147G0141 Durio zibethinus HOM05D004344 ORTHO05D006026 2.9e-18 96.7 106 42.5
AL8G44260 Arabidopsis lyrata HOM05D004344 ORTHO05D006026 6.5e-18 95.5 174 37.9
BolC7t42987H Brassica oleracea HOM05D004344 ORTHO05D006026 8.5e-18 95.1 135 43.7
BraA07t29411Z Brassica rapa HOM05D004344 ORTHO05D006026 2.5e-17 93.6 115 47.0
A02p33280 Brassica napus HOM05D004344 ORTHO05D006026 1.2e-16 91.3 196 36.2
MD02G1174200 Malus domestica HOM05D004344 ORTHO05D006026 3.6e-16 89.7 169 34.3
SMO229G0008 Selaginella moellendorffii HOM05D004344 ORTHO05D006026 6.1e-16 89.0 87 51.7
SHI09544 Sapria himalayana HOM05D004344 ORTHO05D006026 1.0e-15 88.2 124 42.7
Hund16343 Selenicereus undatus HOM05D004344 ORTHO05D006026 1.4e-15 87.8 85 45.9
BcaC03g17194 Brassica carinata HOM05D004344 ORTHO05D006026 3.0e-15 86.7 116 44.0
Cre04.g214350 Chlamydomonas reinhardtii HOM05D004344 ORTHO05D006026 1.4e-12 77.8 212 28.3
PRCOL_00001322 Prasinoderma coloniale HOM05D004344 ORTHO05D006026 1.0e-10 71.6 170 31.8
TPR.G24574 Trifolium pratense HOM05D004344 ORTHO05D006026 2.3e-07 60.5 97 40.2
RcHm_v2.0_Chr2g0168121 Rosa chinensis HOM05D004344 ORTHO05D021344 4.4e-06 56.2 122 32.0


User provided reference genes

Program Settings