Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG9G6430 Aethionema arabicum HOM05D007300 ORTHO05D009301 0.0e+00 1307.0 665 100.0
Sp2g11270 Schrenkiella parvula HOM05D007300 ORTHO05D009301 3.7e-296 1021.1 656 78.8
AT5G46420 Arabidopsis thaliana HOM05D007300 ORTHO05D009301 1.4e-295 1019.2 665 77.7
Thhalv10000812m.g Eutrema salsugineum HOM05D007300 ORTHO05D009301 5.9e-294 1013.8 655 78.5
AL8G11990 Arabidopsis lyrata HOM05D007300 ORTHO05D009301 1.3e-293 1012.7 666 77.6
CARHR175340 Cardamine hirsuta HOM05D007300 ORTHO05D009301 2.2e-293 1011.9 666 77.9
Carub.0008s0147 Capsella rubella HOM05D007300 ORTHO05D009301 4.0e-290 1001.1 665 77.1
A06p45940 Brassica napus HOM05D007300 ORTHO05D009301 5.2e-290 1000.7 657 76.7
C07p29650 Brassica napus HOM05D007300 ORTHO05D009301 7.7e-286 986.9 656 76.4
BolC7t43517H Brassica oleracea HOM05D007300 ORTHO05D009301 1.3e-285 986.1 656 76.4
BraA06t27457Z Brassica rapa HOM05D007300 ORTHO05D009301 4.0e-282 974.5 640 76.9
THA.LOC104827733 Tarenaya hassleriana HOM05D007300 ORTHO05D009301 4.4e-257 891.3 671 69.3
CiPaw.10G096200 Carya illinoinensis HOM05D007300 ORTHO05D009301 1.4e-186 657.1 619 55.3
Cfa001024 Carpinus fangiana HOM05D007300 ORTHO05D009301 1.7e-184 650.2 620 56.0
FvH4_3g06410 Fragaria vesca HOM05D007300 ORTHO05D009301 6.3e-179 631.7 674 51.2
RcHm_v2.0_Chr5g0012901 Rosa chinensis HOM05D007300 ORTHO05D009301 7.0e-178 628.2 637 52.9
FAN21G2574 Fragaria x ananassa HOM05D007300 ORTHO05D009301 2.6e-177 626.3 675 51.0
Thecc.06G157700 Theobroma cacao HOM05D007300 ORTHO05D009301 5.9e-177 625.2 672 51.8
Ciclev10014510m.g Citrus clementina HOM05D007300 ORTHO05D009301 7.7e-177 624.8 628 52.5
QL05p060322 Quercus lobata HOM05D007300 ORTHO05D009301 7.7e-177 624.8 619 53.6
Gorai.011G040700 Gossypium raimondii HOM05D007300 ORTHO05D009301 1.1e-175 620.9 676 51.0
Potri.001G353800 Populus trichocarpa HOM05D007300 ORTHO05D009301 1.9e-175 620.2 617 54.3
Gohir.D10G038600 Gossypium hirsutum HOM05D007300 ORTHO05D009301 3.2e-175 619.4 676 50.9
Dinv32299 Davidia involucrata HOM05D007300 ORTHO05D009301 1.6e-174 617.1 674 50.3
MD05G1291800 Malus domestica HOM05D007300 ORTHO05D009301 2.7e-174 616.3 667 50.4
Prupe.4G073700 Prunus persica HOM05D007300 ORTHO05D009301 2.7e-174 616.3 684 49.0
TWI73G0852 Tripterygium wilfordii HOM05D007300 ORTHO05D009301 3.6e-174 615.9 620 52.3
Cpa.g.sc17.110 Carica papaya HOM05D007300 ORTHO05D009301 6.1e-174 615.1 609 54.7
CANSAT35G1474 Cannabis sativa HOM05D007300 ORTHO05D009301 1.8e-173 613.6 672 52.7
FAN11G2841 Fragaria x ananassa HOM05D007300 ORTHO05D009301 1.5e-172 610.5 734 47.8
Manes.17G064900 Manihot esculenta HOM05D007300 ORTHO05D009301 5.3e-170 602.1 656 49.7
Gohir.A10G037600 Gossypium hirsutum HOM05D007300 ORTHO05D009301 9.1e-170 601.3 674 50.1
GSVIVG01021378001 Vitis vinifera HOM05D007300 ORTHO05D009301 9.1e-170 601.3 678 48.7
COL.COLO4_22798 Corchorus olitorius HOM05D007300 ORTHO05D009301 7.7e-169 598.2 620 53.1
Atru.chr10.1398 Acer truncatum HOM05D007300 ORTHO05D009301 1.0e-168 597.8 569 54.7
Haze_05485 Corylus avellana HOM05D007300 ORTHO05D009301 1.0e-168 597.8 735 47.1
TAR627G1006 Trochodendron aralioides HOM05D007300 ORTHO05D009301 1.3e-168 597.4 680 49.0
Atru.chr10.1407 Acer truncatum HOM05D007300 ORTHO05D009301 2.5e-167 593.2 567 54.5
Sabra16G0232700 Salix brachista HOM05D007300 ORTHO05D009301 7.2e-167 591.7 701 49.6
Lalb_Chr13g0295471 Lupinus albus HOM05D007300 ORTHO05D009301 3.6e-166 589.3 656 49.1
ClCG03G007190 Citrullus lanatus HOM05D007300 ORTHO05D009301 6.1e-166 588.6 684 48.5
Actinidia19486 Actinidia chinensis HOM05D007300 ORTHO05D009301 1.5e-164 583.9 613 52.0
CsaV3_1G032780 Cucumis sativus L. HOM05D007300 ORTHO05D009301 2.0e-164 583.6 677 49.9
Nitab4.5_0003714g0040 Nicotiana tabacum HOM05D007300 ORTHO05D009301 2.6e-164 583.2 674 49.4
CSS0020184 Camellia sinensis var. sinensis HOM05D007300 ORTHO05D009301 7.5e-164 581.6 613 50.9
Peaxi162Scf00649g00027 Petunia axillaris HOM05D007300 ORTHO05D009301 1.8e-162 577.0 623 51.0
Nitab4.5_0001283g0060 Nicotiana tabacum HOM05D007300 ORTHO05D009301 4.1e-162 575.9 676 48.1
PGSC0003DMG400003073 Solanum tuberosum HOM05D007300 ORTHO05D009301 5.4e-162 575.5 611 51.6
PSO541G4163 Papaver somniferum HOM05D007300 ORTHO05D009301 2.7e-161 573.2 612 50.7
CAN.G257.51 Capsicum annuum HOM05D007300 ORTHO05D009301 5.9e-161 572.0 617 51.1
Solyc02g071280.3 Solanum lycopersicum HOM05D007300 ORTHO05D009301 2.3e-160 570.1 616 51.1
arahy.Tifrunner.gnm1.ann1.D64P8M Arachis hypogaea HOM05D007300 ORTHO05D009301 8.6e-160 568.2 616 48.4
Aqoxy1G01857 Aquilegia oxysepala HOM05D007300 ORTHO05D009301 9.5e-159 564.7 633 47.2
Eucgr.D00343 Eucalyptus grandis HOM05D007300 ORTHO05D009301 9.5e-159 564.7 590 52.2
Sopen02g020340 Solanum pennellii HOM05D007300 ORTHO05D009301 9.5e-159 564.7 615 50.6
arahy.Tifrunner.gnm1.ann1.FQ35JE Arachis hypogaea HOM05D007300 ORTHO05D009301 1.6e-158 563.9 628 47.5
HanXRQChr04g0119571 Helianthus annuus HOM05D007300 ORTHO05D009301 2.1e-158 563.5 660 47.9
Medtr8g088030 Medicago truncatula HOM05D007300 ORTHO05D009301 8.0e-158 561.6 619 48.1
ECA236G2360 Erigeron canadensis HOM05D007300 ORTHO05D009301 5.2e-157 558.9 669 47.5
Oeu021524.1 Olea europaea HOM05D007300 ORTHO05D009301 1.5e-156 557.4 611 49.8
Lsat_1_v5_gn_7_31040 Lactuca sativa HOM05D007300 ORTHO05D009301 9.8e-156 554.7 661 47.0
Glyma.08G121900 Glycine max HOM05D007300 ORTHO05D009301 2.2e-155 553.5 658 45.3
Ca_17871_v3 Cicer arietinum L. HOM05D007300 ORTHO05D009301 2.7e-153 546.6 635 46.1
Duzib235G1110 Durio zibethinus HOM05D007300 ORTHO05D009301 5.9e-153 545.4 683 46.9
Lj4g0024386 Lotus japonicus HOM05D007300 ORTHO05D009301 5.9e-153 545.4 623 47.5
Glyma.05G164500 Glycine max HOM05D007300 ORTHO05D009301 1.3e-152 544.3 679 44.8
TPR.G6793 Trifolium pratense HOM05D007300 ORTHO05D009301 1.3e-152 544.3 621 46.7
Phvul.002G244500 Phaseolus vulgaris HOM05D007300 ORTHO05D009301 1.1e-151 541.2 595 47.6
Sc05g0006590 Simmondsia chinensis HOM05D007300 ORTHO05D009301 4.3e-151 539.3 680 46.0
SalBow8G1735 Salvia bowleyana HOM05D007300 ORTHO05D009301 4.0e-149 532.7 622 48.1
Migut.M00959 Erythranthe guttata HOM05D007300 ORTHO05D009301 3.4e-148 529.6 680 45.4
AUR62027555 Chenopodium quinoa HOM05D007300 ORTHO05D009301 4.4e-148 529.3 614 47.1
VMungo0251G3397 Vigna mungo HOM05D007300 ORTHO05D009301 9.8e-148 528.1 577 48.5
DCAR_027959 Daucus carota HOM05D007300 ORTHO05D009301 2.2e-147 526.9 613 47.0
PGR044G1273 Punica granatum HOM05D007300 ORTHO05D009301 3.7e-147 526.2 597 48.4
Lj1C1181T32 Lonicera japonica HOM05D007300 ORTHO05D009301 6.4e-147 525.4 680 45.3
Psat7g066760 Pisum sativum HOM05D007300 ORTHO05D009301 4.1e-146 522.7 653 44.0
MBI10_g02388_MAGBIO Magnolia biondii HOM05D007300 ORTHO05D009301 1.6e-145 520.8 620 45.2
SGA_v2.0_scaffold1G00132 Striga asiatica HOM05D007300 ORTHO05D009301 6.0e-145 518.8 650 45.8
Nn3g20905 Nelumbo nucifera HOM05D007300 ORTHO05D009301 7.8e-145 518.5 579 47.5
AUR62035801 Chenopodium quinoa HOM05D007300 ORTHO05D009301 1.3e-144 517.7 614 47.1
HPP92_023296 Vanilla planifolia HOM05D007300 ORTHO05D009301 6.2e-126 455.7 630 40.6
FAN16G1565 Fragaria x ananassa HOM05D007300 ORTHO05D009301 9.9e-124 448.4 486 50.6
EL10Ac8g19794 Beta vulgaris HOM05D007300 ORTHO05D009301 3.2e-122 443.4 680 40.7
ATR1153G036 Amborella trichopoda HOM05D007300 ORTHO05D009301 5.4e-122 442.6 650 38.5
PSO675G3105 Papaver somniferum HOM05D007300 ORTHO05D009301 3.2e-106 390.2 358 55.6
Sed0024786 Sechium edule HOM05D007300 ORTHO05D009301 3.2e-106 390.2 449 49.4
unitig_92.g28150 Utricularia gibba HOM05D007300 ORTHO05D009301 1.8e-96 357.8 434 44.5
SEGI_38698 Sequoiadendron giganteum HOM05D007300 ORTHO05D009301 8.4e-91 339.0 586 33.6
HPP92_023271 Vanilla planifolia HOM05D007300 ORTHO05D009301 2.8e-86 323.9 620 33.2
Mapoly0019s0078 Marchantia polymorpha HOM05D007300 ORTHO05D009301 1.1e-79 302.0 675 30.1
AagrBONN_evm.TU.Sc2ySwM_228.1844 Anthoceros agrestis HOM05D007300 ORTHO05D004905 1.4e-72 278.5 526 33.8
MELO3C002704.2 Cucumis melo HOM05D007300 ORTHO05D009301 1.4e-72 278.5 359 46.2
Zm00001eb296050 Zea mays HOM05D007300 ORTHO05D009301 3.9e-72 276.9 275 47.3
CDE06G2820 Ceratophyllum demersum HOM05D007300 ORTHO05D009301 2.0e-71 274.6 270 51.1
Pp3c15_14250 Physcomitrium patens HOM05D007300 ORTHO05D009301 9.1e-69 265.8 553 31.3
Os05g0566300 Oryza sativa ssp. japonica HOM05D007300 ORTHO05D009301 5.0e-59 233.4 207 50.2
Zm00001eb349440 Zea mays HOM05D007300 ORTHO05D009301 5.6e-42 176.8 176 47.7
Gorai.004G093400 Gossypium raimondii HOM05D007300 ORTHO05D009301 3.0e-40 171.0 190 49.5
Gohir.D08G088700 Gossypium hirsutum HOM05D007300 ORTHO05D009301 1.7e-38 165.2 190 48.4
SEGI_17563 Sequoiadendron giganteum HOM05D007300 ORTHO05D009301 6.2e-33 146.7 181 42.5
THA.LOC104798460 Tarenaya hassleriana HOM05D007300 ORTHO05D009301 1.4e-29 135.6 121 55.4
MCO05G669 Micromonas commoda HOM05D007300 ORTHO05D009301 1.3e-22 112.5 228 31.1
Pp3c4_17200 Physcomitrium patens HOM05D003927 ORTHO05D004905 3.2e-21 107.8 317 26.8
Zm00001eb184690 Zea mays HOM05D007300 ORTHO05D009301 4.3e-18 97.4 83 47.0
Cre03.g191950 Chlamydomonas reinhardtii HOM05D007300 ORTHO05D009301 1.2e-17 95.9 200 32.5
CDE06G1765 Ceratophyllum demersum HOM05D007300 ORTHO05D009301 1.1e-10 72.8 160 30.6
AagrBONN_evm.TU.Sc2ySwM_362.1916 Anthoceros agrestis HOM05D003927 ORTHO05D004905 4.3e-10 70.9 134 27.6
Sc24g0002980 Simmondsia chinensis HOM05D003927 ORTHO05D004905 3.6e-09 67.8 141 27.0
Ciclev10014997m.g Citrus clementina HOM05D003927 ORTHO05D004905 6.2e-09 67.0 131 26.7
Mapoly0089s0037 Marchantia polymorpha HOM05D003927 ORTHO05D004905 8.1e-09 66.6 129 27.9
arahy.Tifrunner.gnm1.ann1.YAS9I4 Arachis hypogaea HOM05D003927 ORTHO05D004905 1.1e-08 66.2 125 28.0
Medtr4g094668 Medicago truncatula HOM05D003927 ORTHO05D004905 1.1e-08 66.2 125 27.2
Sabra01G0132300 Salix brachista HOM05D003927 ORTHO05D004905 1.1e-08 66.2 125 28.0
Phvul.002G190700 Phaseolus vulgaris HOM05D003927 ORTHO05D004905 1.4e-08 65.9 125 28.0
MSTRG.7601 Avicennia marina HOM05D003927 ORTHO05D004905 1.8e-08 65.5 125 28.0
Duzib248G0257 Durio zibethinus HOM05D003927 ORTHO05D004905 1.8e-08 65.5 134 26.1
Hund12931 Selenicereus undatus HOM05D003927 ORTHO05D004905 1.8e-08 65.5 140 26.4
unitig_748.g7494 Utricularia gibba HOM05D003927 ORTHO05D004905 1.8e-08 65.5 295 23.4
CSS0033159 Camellia sinensis var. sinensis HOM05D003927 ORTHO05D004905 2.4e-08 65.1 293 24.6
Ca_18249_v3 Cicer arietinum L. HOM05D003927 ORTHO05D004905 2.4e-08 65.1 125 28.0
Glyma.05G132100 Glycine max HOM05D003927 ORTHO05D004905 2.4e-08 65.1 125 28.0
Glyma.08G086700 Glycine max HOM05D003927 ORTHO05D004905 2.4e-08 65.1 125 28.0
Potri.001G159700 Populus trichocarpa HOM05D003927 ORTHO05D004905 2.4e-08 65.1 125 28.0
arahy.Tifrunner.gnm1.ann1.QMDN7F Arachis hypogaea HOM05D003927 ORTHO05D004905 3.1e-08 64.7 125 28.0
CDE12G0287 Ceratophyllum demersum HOM05D003927 ORTHO05D004905 3.1e-08 64.7 125 25.6
Lj4g0018518 Lotus japonicus HOM05D003927 ORTHO05D004905 3.1e-08 64.7 125 28.0
MBI18_g31367_MAGBIO Magnolia biondii HOM05D003927 ORTHO05D004905 3.1e-08 64.7 125 27.2
Psat7g088440 Pisum sativum HOM05D003927 ORTHO05D004905 3.1e-08 64.7 125 28.0
TPR.G2935 Trifolium pratense HOM05D003927 ORTHO05D004905 3.1e-08 64.7 125 27.2
VMungo0251G3294 Vigna mungo HOM05D003927 ORTHO05D004905 3.1e-08 64.7 125 28.0
CDE01G0678 Ceratophyllum demersum HOM05D000154 ORTHO05D004905 4.0e-08 64.3 304 22.0
Peaxi162Scf00199g00517 Petunia axillaris HOM05D003927 ORTHO05D004905 4.0e-08 64.3 125 27.2
CAN.G149.2 Capsicum annuum HOM05D003927 ORTHO05D004905 5.2e-08 63.9 125 27.2
Dinv29312 Davidia involucrata HOM05D003927 ORTHO05D004905 5.2e-08 63.9 125 28.0
Nitab4.5_0000443g0090 Nicotiana tabacum HOM05D003927 ORTHO05D004905 5.2e-08 63.9 125 27.2
Nitab4.5_0006246g0020 Nicotiana tabacum HOM05D003927 ORTHO05D004905 5.2e-08 63.9 125 27.2
Thecc.02G005900 Theobroma cacao HOM05D003927 ORTHO05D004905 5.2e-08 63.9 125 25.6
Cfa023099 Carpinus fangiana HOM05D003927 ORTHO05D004905 6.8e-08 63.5 205 22.0
RcHm_v2.0_Chr5g0020631 Rosa chinensis HOM05D003927 ORTHO05D004905 6.8e-08 63.5 125 26.4
Solyc02g068530.4 Solanum lycopersicum HOM05D003927 ORTHO05D004905 6.8e-08 63.5 125 26.4
Sopen02g017670 Solanum pennellii HOM05D003927 ORTHO05D004905 6.8e-08 63.5 125 26.4
PGSC0003DMG400010448 Solanum tuberosum HOM05D003927 ORTHO05D004905 6.8e-08 63.5 125 26.4
Lj2A344G38 Lonicera japonica HOM05D003927 ORTHO05D004905 8.9e-08 63.2 139 25.2
Oeu058944.1 Olea europaea HOM05D003927 ORTHO05D004905 8.9e-08 63.2 125 27.2
SalBow8G3138 Salvia bowleyana HOM05D003927 ORTHO05D004905 1.2e-07 62.8 110 30.9
COL.COLO4_17634 Corchorus olitorius HOM05D003927 ORTHO05D004905 1.5e-07 62.4 125 26.4
TAR624G0604 Trochodendron aralioides HOM05D003927 ORTHO05D004905 1.5e-07 62.4 139 25.9
Cc00_g22880 Coffea canephora HOM05D003927 ORTHO05D004905 2.0e-07 62.0 125 25.6
TAR625G0767 Trochodendron aralioides HOM05D003927 ORTHO05D004905 2.0e-07 62.0 298 23.2
Atru.chr10.419 Acer truncatum HOM05D003927 ORTHO05D004905 2.6e-07 61.6 125 26.4
TAR628G0742 Trochodendron aralioides HOM05D003927 ORTHO05D004905 2.6e-07 61.6 139 25.9
Aqoxy3G04338 Aquilegia oxysepala HOM05D003927 ORTHO05D004905 3.4e-07 61.2 125 26.4
DCAR_003771 Daucus carota HOM05D003927 ORTHO05D004905 3.4e-07 61.2 214 22.9
Duzib132G1257 Durio zibethinus HOM05D003927 ORTHO05D004905 3.4e-07 61.2 125 25.6
Gohir.A03G217900 Gossypium hirsutum HOM05D003927 ORTHO05D004905 3.4e-07 61.2 125 25.6
Gohir.A12G048400 Gossypium hirsutum HOM05D003927 ORTHO05D004905 3.4e-07 61.2 295 22.4
Gorai.008G049800 Gossypium raimondii HOM05D003927 ORTHO05D004905 3.4e-07 61.2 304 22.7
Manes.03G074000 Manihot esculenta HOM05D003927 ORTHO05D004905 3.4e-07 61.2 99 31.3
SGA_v2.0_scaffold298G47698 Striga asiatica HOM05D003927 ORTHO05D004905 5.8e-07 60.5 125 26.4
Gohir.D12G047200 Gossypium hirsutum HOM05D003927 ORTHO05D004905 7.6e-07 60.1 292 22.3
Migut.M01998 Erythranthe guttata HOM05D003927 ORTHO05D004905 9.9e-07 59.7 99 29.3
Lsat_1_v5_gn_2_61101 Lactuca sativa HOM05D003927 ORTHO05D004905 9.9e-07 59.7 99 30.3
HanXRQChr15g0483481 Helianthus annuus HOM05D003927 ORTHO05D004905 1.3e-06 59.3 99 28.3
SGA_v2.0_scaffold175G39352 Striga asiatica HOM05D003927 ORTHO05D004905 1.3e-06 59.3 125 26.4
HanXRQChr14g0440241 Helianthus annuus HOM05D003927 ORTHO05D004905 2.9e-06 58.2 99 28.3


User provided reference genes

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