Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG7G14640 Aethionema arabicum HOM05D004874 ORTHO05D006796 0.0e+00 2469.9 1236 100.0
CARHR113090 Cardamine hirsuta HOM05D004874 ORTHO05D006796 0.0e+00 2008.8 1272 79.2
AT2G22010 Arabidopsis thaliana HOM05D004874 ORTHO05D006796 0.0e+00 2006.9 1272 79.3
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 0.0e+00 2003.0 1272 78.9
AL4G11330 Arabidopsis lyrata HOM05D004874 ORTHO05D006796 0.0e+00 1998.4 1269 79.0
BcaB08g35028 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1994.5 1273 78.8
C08p41080 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1978.0 1277 78.0
BcaC07g41106 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1977.6 1277 77.8
BolC8t51674H Brassica oleracea HOM05D004874 ORTHO05D006796 0.0e+00 1971.4 1283 77.6
Sp4g01070 Schrenkiella parvula HOM05D004874 ORTHO05D006796 0.0e+00 1969.5 1270 78.1
A09p57840 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1958.0 1276 77.4
Thhalv10000015m.g Eutrema salsugineum HOM05D004874 ORTHO05D006796 0.0e+00 1957.6 1268 77.8
BraA09t41177Z Brassica rapa HOM05D004874 ORTHO05D006796 0.0e+00 1944.5 1282 76.8
THA.LOC104804146 Tarenaya hassleriana HOM05D004874 ORTHO05D006796 0.0e+00 1860.1 1275 73.4
Ciclev10024728m.g Citrus clementina HOM05D004874 ORTHO05D006796 0.0e+00 1669.4 1272 66.0
Thecc.01G111200 Theobroma cacao HOM05D004874 ORTHO05D006796 0.0e+00 1657.9 1270 65.7
Gorai.011G111800 Gossypium raimondii HOM05D004874 ORTHO05D006796 0.0e+00 1648.3 1270 65.4
Gohir.D10G102100 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1643.2 1270 65.3
Atru.chr4.387 Acer truncatum HOM05D004874 ORTHO05D006796 0.0e+00 1639.0 1273 65.9
Gohir.A10G086600 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1638.6 1270 65.2
Sabra05G0068900 Salix brachista HOM05D004874 ORTHO05D006796 0.0e+00 1632.8 1282 65.1
Potri.005G083800 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1632.5 1275 64.8
Manes.13G077640 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1624.8 1272 64.6
CANSAT01G0647 Cannabis sativa HOM05D004874 ORTHO05D006796 0.0e+00 1610.9 1274 64.1
QL06p032401 Quercus lobata HOM05D004874 ORTHO05D006796 0.0e+00 1607.8 1274 63.8
TWI74G1507 Tripterygium wilfordii HOM05D004874 ORTHO05D006796 0.0e+00 1601.3 1279 62.9
Phvul.009G140100 Phaseolus vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1600.1 1272 62.6
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1598.6 1275 63.7
Glyma.04G220000 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1592.8 1271 62.8
Dinv19497 Davidia involucrata HOM05D004874 ORTHO05D006796 0.0e+00 1591.6 1281 63.6
Prupe.6G174100 Prunus persica HOM05D004874 ORTHO05D006796 0.0e+00 1588.5 1276 64.3
Glyma.06G145900 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1584.7 1271 62.4
VMungo1309G2704 Vigna mungo HOM05D004874 ORTHO05D006796 0.0e+00 1580.8 1273 61.8
CSS0018271 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1575.1 1278 63.1
MD15G1333600 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1573.9 1271 63.7
Lj1g0000337 Lotus japonicus HOM05D004874 ORTHO05D006796 0.0e+00 1569.3 1269 62.0
GSVIVG01022217001 Vitis vinifera HOM05D004874 ORTHO05D006796 0.0e+00 1563.9 1274 63.1
FvH4_1g22150 Fragaria vesca HOM05D004874 ORTHO05D006796 0.0e+00 1559.3 1275 63.4
Actinidia15577 Actinidia chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1558.9 1275 62.2
RcHm_v2.0_Chr2g0116231 Rosa chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1558.9 1271 63.3
CSS0002284 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1557.3 1283 62.5
Medtr3g094770 Medicago truncatula HOM05D004874 ORTHO05D006796 0.0e+00 1547.3 1275 61.2
PSO541G0735 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1544.6 1270 61.5
TPR.G23744 Trifolium pratense HOM05D004874 ORTHO05D006796 0.0e+00 1544.3 1274 60.8
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 0.0e+00 1543.9 1235 64.4
Manes.12G141800 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1543.9 1247 62.8
arahy.Tifrunner.gnm1.ann1.ZQBN5H Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1540.4 1268 61.9
Ca_16889_v3 Cicer arietinum L. HOM05D004874 ORTHO05D006796 0.0e+00 1539.2 1268 61.3
arahy.Tifrunner.gnm1.ann1.M2IALY Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1538.5 1268 61.8
FAN28G2703 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1537.3 1274 62.6
Psat5g065960 Pisum sativum HOM05D004874 ORTHO05D006796 0.0e+00 1537.3 1276 61.2
FAN19G0866 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1536.5 1304 61.8
PSO675G8458 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1535.8 1270 61.3
FAN23G3027 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1534.6 1274 62.6
Nn5g28922 Nelumbo nucifera HOM05D004874 ORTHO05D006796 0.0e+00 1533.1 1282 61.5
FAN26G2351 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1531.9 1274 62.6
Rhsim10G0151300 Rhododendron simsii HOM05D004874 ORTHO05D006796 0.0e+00 1525.0 1281 61.3
Lalb_Chr11g0068041 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1524.2 1270 60.6
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 0.0e+00 1516.9 1273 61.2
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 0.0e+00 1516.9 1274 60.9
Eucgr.H04838 Eucalyptus grandis HOM05D004874 ORTHO05D006796 0.0e+00 1508.8 1269 60.4
Sopen04g023580 Solanum pennellii HOM05D004874 ORTHO05D006796 0.0e+00 1507.7 1275 60.4
Aqoxy6G00493 Aquilegia oxysepala HOM05D004874 ORTHO05D006796 0.0e+00 1505.7 1290 60.9
EL10Ac6g14746 Beta vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1503.4 1356 57.1
Lsat_1_v5_gn_2_65401 Lactuca sativa HOM05D004874 ORTHO05D006796 0.0e+00 1500.7 1277 59.7
CAN.G1728.1 Capsicum annuum HOM05D004874 ORTHO05D006796 0.0e+00 1499.6 1271 59.8
Solyc04g054140.4 Solanum lycopersicum HOM05D004874 ORTHO05D006796 0.0e+00 1498.0 1280 60.2
Peaxi162Scf00323g00112 Petunia axillaris HOM05D004874 ORTHO05D006796 0.0e+00 1494.9 1242 60.7
ECA238G3208 Erigeron canadensis HOM05D004874 ORTHO05D006796 0.0e+00 1493.0 1276 58.9
HanXRQChr14g0446191 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1492.6 1277 59.4
Cc07_g16070 Coffea canephora HOM05D004874 ORTHO05D006796 0.0e+00 1489.9 1275 59.6
Migut.H02425 Erythranthe guttata HOM05D004874 ORTHO05D006796 0.0e+00 1478.4 1273 59.5
Oeu028379.4 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1470.7 1376 55.8
PGR102G1404 Punica granatum HOM05D004874 ORTHO05D006796 0.0e+00 1469.5 1249 60.9
AUR62016271 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1466.1 1278 58.6
HanXRQChr10g0295251 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1462.2 1275 58.6
AUR62003312 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1461.4 1278 58.2
Sed0015455 Sechium edule HOM05D004874 ORTHO05D006796 0.0e+00 1446.0 1272 58.8
Lalb_Chr13g0296191 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1429.5 1273 57.1
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 0.0e+00 1416.0 1251 59.1
Hund19660 Selenicereus undatus HOM05D004874 ORTHO05D006796 0.0e+00 1415.6 1226 59.5
SGA_v2.0_scaffold2G01299 Striga asiatica HOM05D004874 ORTHO05D006796 0.0e+00 1415.2 1369 55.1
ATR0564G436 Amborella trichopoda HOM05D004874 ORTHO05D006796 0.0e+00 1410.2 1288 57.9
SalBow6G4347 Salvia bowleyana HOM05D004874 ORTHO05D006796 0.0e+00 1392.1 1179 60.2
TAR628G0415 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1390.6 1193 60.6
DCAR_014257 Daucus carota HOM05D004874 ORTHO05D006796 0.0e+00 1384.4 1263 56.5
Zm00001eb328050 Zea mays HOM05D004874 ORTHO05D006796 0.0e+00 1333.2 1276 53.5
CDE07G0820 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1308.5 1247 54.5
TAR376G0110 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1296.6 1042 63.1
Nitab4.5_0000156g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 0.0e+00 1276.5 1040 61.5
SEGI_33214 Sequoiadendron giganteum HOM05D004874 ORTHO05D006796 0.0e+00 1271.5 1269 52.6
MD01G1017400 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1265.8 1030 64.0
PGSC0003DMG400012951 Solanum tuberosum HOM05D004874 ORTHO05D006796 0.0e+00 1232.2 1046 59.9
Duzib147G0760 Durio zibethinus HOM05D004874 ORTHO05D006796 0.0e+00 1223.0 1256 52.5
unitig_899.g14600 Utricularia gibba HOM05D004874 ORTHO05D006796 0.0e+00 1213.0 1156 55.4
COL.COLO4_11028 Corchorus olitorius HOM05D004874 ORTHO05D006796 0.0e+00 1134.0 1268 50.6
CDE04G1796 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1116.3 1221 49.7
Cpa.g.sc196.7 Carica papaya HOM05D004874 ORTHO05D006796 2.7e-308 1062.4 829 65.1
Ah.02g124400 Amaranthus hybridus HOM05D004874 ORTHO05D006796 5.2e-304 1048.1 877 60.2
FAN01G2715 Fragaria x ananassa HOM05D004874 ORTHO05D006796 5.8e-303 1044.6 939 59.0
Mapoly0047s0138 Marchantia polymorpha HOM05D004874 ORTHO05D006796 6.6e-299 1031.2 1326 44.8
Pp3c1_33900 Physcomitrium patens HOM05D004874 ORTHO05D006796 5.3e-296 1021.5 1264 46.0
Pp3c2_2760 Physcomitrium patens HOM05D004874 ORTHO05D006796 4.6e-292 1008.4 1322 44.8
Lj2C562G3 Lonicera japonica HOM05D004874 ORTHO05D006796 6.6e-291 1004.6 831 61.1
Pp3c17_14550 Physcomitrium patens HOM05D004874 ORTHO05D006796 7.4e-290 1001.1 1332 44.7
SMO143G0116 Selaginella moellendorffii HOM05D004874 ORTHO05D006796 7.4e-290 1001.1 1196 46.8
CiPaw.04G092800 Carya illinoinensis HOM05D004874 ORTHO05D006796 6.2e-289 998.0 808 65.3
FAN06G3019 Fragaria x ananassa HOM05D004874 ORTHO05D006796 4.0e-280 968.8 940 56.6
AagrBONN_evm.TU.Sc2ySwM_228.911 Anthoceros agrestis HOM05D004874 ORTHO05D006796 1.1e-274 950.7 1139 48.1
MBI02_g13022_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 5.3e-272 941.8 833 57.7
FAN06G4447 Fragaria x ananassa HOM05D004874 ORTHO05D006796 2.3e-267 926.4 940 54.8
vmacro12908 Vaccinium macrocarpon HOM05D004874 ORTHO05D006796 8.2e-265 917.9 777 59.7
Oeu030684.1 Olea europaea HOM05D004874 ORTHO05D006796 5.9e-263 911.8 764 61.0
MSTRG.2539 Avicennia marina HOM05D004874 ORTHO05D006796 2.9e-246 856.3 764 59.0
FAN10G0201 Fragaria x ananassa HOM05D004874 ORTHO05D006796 6.7e-243 845.1 690 63.5
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 3.9e-206 723.0 1459 34.7
HPP92_016848 Vanilla planifolia HOM05D004874 ORTHO05D006796 1.8e-195 687.6 623 57.9
HPP92_016847 Vanilla planifolia HOM05D004874 ORTHO05D006796 1.7e-185 654.4 613 53.0
FvH4_7g04730 Fragaria vesca HOM05D004874 ORTHO05D006796 1.5e-178 631.3 564 59.2
FAN03G2613 Fragaria x ananassa HOM05D004874 ORTHO05D006796 6.9e-171 605.9 501 64.5
Oeu030685.1 Olea europaea HOM05D004874 ORTHO05D006796 4.3e-165 586.6 501 56.7
Lj2A562T49 Lonicera japonica HOM05D004874 ORTHO05D006796 1.4e-155 555.1 470 61.9
Cc07_g14920 Coffea canephora HOM05D004874 ORTHO05D006796 4.7e-111 407.1 395 56.2
MBI02_g44126_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 8.0e-111 406.4 362 59.7
Cpa.g.sc196.6 Carica papaya HOM05D004874 ORTHO05D006796 3.4e-109 401.0 324 62.7
Ah.02g124390 Amaranthus hybridus HOM05D004874 ORTHO05D006796 1.4e-99 369.0 333 58.9
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 5.8e-85 320.5 1440 25.4
Os07g0626900 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 1.5e-77 295.8 260 57.3
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 4.3e-64 251.1 1229 23.3
Sabra07G0068700 Salix brachista HOM05D004874 ORTHO05D006796 4.9e-44 184.5 236 46.2
FvH4_7g04731 Fragaria vesca HOM05D004874 ORTHO05D006796 7.4e-40 170.6 153 59.5
Nitab4.5_0010573g0010 Nicotiana tabacum HOM05D004874 ORTHO05D006796 4.1e-38 164.9 149 55.7
Solyc05g055570.3 Solanum lycopersicum HOM05D004874 ORTHO05D014502 3.6e-26 125.2 101 62.4
HanXRQChr11g0324541 Helianthus annuus HOM05D004874 ORTHO05D006796 1.5e-24 119.8 76 73.7
BcaC09g48952 Brassica carinata HOM05D004874 ORTHO05D014502 3.7e-15 88.6 53 81.1
BcaC06g36156 Brassica carinata HOM05D004874 ORTHO05D014502 8.2e-15 87.4 53 79.2
BcaC04g21885 Brassica carinata HOM05D004874 ORTHO05D014502 2.0e-13 82.8 56 71.4
C07p07140 Brassica napus HOM05D004874 ORTHO05D014502 2.9e-12 79.0 48 79.2
C01p44130 Brassica napus HOM05D004874 ORTHO05D014502 5.0e-12 78.2 48 79.2
C09p26200 Brassica napus HOM05D004874 ORTHO05D014502 6.5e-12 77.8 48 79.2
BolC9t55523H Brassica oleracea HOM05D004874 ORTHO05D014502 6.5e-12 77.8 48 79.2
A01p36370 Brassica napus HOM05D004874 ORTHO05D014502 1.1e-11 77.0 48 77.1
A02p42430 Brassica napus HOM05D004874 ORTHO05D014502 1.1e-11 77.0 48 77.1
BolC7t41133H Brassica oleracea HOM05D004874 ORTHO05D014502 1.1e-11 77.0 48 77.1
BraA01t04208Z Brassica rapa HOM05D004874 ORTHO05D014502 1.1e-11 77.0 48 77.1
BraA02t09174Z Brassica rapa HOM05D004874 ORTHO05D014502 1.1e-11 77.0 48 77.1
Cre03.g188750 Chlamydomonas reinhardtii HOM05D000032 ORTHO05D028824 5.5e-11 74.7 140 35.0
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 7.2e-11 74.3 113 37.2
HanXRQChr12g0385291 Helianthus annuus HOM05D004874 ORTHO05D006796 2.7e-10 72.4 66 60.6
HanXRQChr11g0341101 Helianthus annuus HOM05D004874 ORTHO05D006796 8.0e-10 70.9 48 70.8
Zm00001eb137300 Zea mays HOM05D004874 ORTHO05D006796 1.0e-09 70.5 87 46.0
A05p26160 Brassica napus HOM05D004874 ORTHO05D014502 2.0e-08 66.2 50 66.0
Cre09.g387801 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 2.0e-08 66.2 140 32.1
MCO11G679 Micromonas commoda HOM05D000032 ORTHO05D028824 3.3e-08 65.5 133 29.3
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 4.4e-08 65.1 117 35.0
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 3.7e-07 62.0 41 75.6
Zm00001eb182000 Zea mays HOM05D003906 ORTHO05D004776 3.7e-07 62.0 143 28.0
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 4.8e-07 61.6 178 32.6
MCO01G564 Micromonas commoda HOM05D003906 ORTHO05D004776 1.1e-06 60.5 120 29.2
Nitab4.5_0000904g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 1.4e-06 60.1 39 71.8
Zm00001eb243840 Zea mays HOM05D003906 ORTHO05D004776 1.4e-06 60.1 118 33.9
Os02g0556600 Oryza sativa ssp. japonica HOM05D003906 ORTHO05D004776 3.1e-06 58.9 146 31.5


User provided reference genes

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