Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG4G1900 Aethionema arabicum HOM05D005238 ORTHO05D006337 1.7e-153 546.2 330 100.0
BcaC07g38806 Brassica carinata HOM05D005238 ORTHO05D006337 2.3e-41 173.7 157 64.3
Sp1g14750 Schrenkiella parvula HOM05D005238 ORTHO05D006337 2.9e-39 166.8 154 63.6
BolC5t30204H Brassica oleracea HOM05D005238 ORTHO05D006337 4.9e-39 166.0 154 65.6
BcaC05g25524 Brassica carinata HOM05D005238 ORTHO05D006337 8.3e-39 165.2 152 65.8
BcaB03g13039 Brassica carinata HOM05D000001 ORTHO05D000003 1.8e-38 164.1 161 61.5
Migut.M01557 Erythranthe guttata HOM05D005238 ORTHO05D006337 4.1e-38 162.9 158 61.4
QL04p073782 Quercus lobata HOM05D005238 ORTHO05D006337 4.1e-38 162.9 156 59.6
Gohir.A13G153000 Gossypium hirsutum HOM05D005238 ORTHO05D006337 1.2e-37 161.4 172 55.2
C08p17490 Brassica napus HOM05D005238 ORTHO05D006337 2.0e-37 160.6 157 62.4
BolC8t49374H Brassica oleracea HOM05D005238 ORTHO05D006337 2.0e-37 160.6 157 62.4
Gohir.D01G026800 Gossypium hirsutum HOM05D005238 ORTHO05D006337 5.9e-37 159.1 158 58.2
Aa31LG7G1130 Aethionema arabicum HOM05D005238 ORTHO05D006337 1.0e-36 158.3 153 65.4
AL1G28770 Arabidopsis lyrata HOM05D005238 ORTHO05D006337 1.3e-36 157.9 162 61.7
Prupe.4G139800 Prunus persica HOM05D005238 ORTHO05D006337 1.3e-36 157.9 157 58.6
A06p12590 Brassica napus HOM05D005238 ORTHO05D006337 1.7e-36 157.5 155 63.2
CANSAT80G2747 Cannabis sativa HOM05D005238 ORTHO05D006337 1.7e-36 157.5 160 59.4
Cpa.g.sc10.47 Carica papaya HOM05D005238 ORTHO05D006337 5.0e-36 156.0 160 56.2
C05p14890 Brassica napus HOM05D005238 ORTHO05D006337 6.6e-36 155.6 154 62.3
BraA08t35057Z Brassica rapa HOM05D000001 ORTHO05D000003 1.1e-35 154.8 133 65.4
BraA06t24421Z Brassica rapa HOM05D005238 ORTHO05D006337 1.9e-35 154.1 156 62.2
Oeu052006.1 Olea europaea HOM05D005238 ORTHO05D006337 2.5e-35 153.7 165 55.2
Dinv42511 Davidia involucrata HOM05D005238 ORTHO05D006337 5.6e-35 152.5 154 57.8
Duzib213G1032 Durio zibethinus HOM05D005238 ORTHO05D006337 5.6e-35 152.5 169 53.8
Oeu003828.2 Olea europaea HOM05D005238 ORTHO05D006337 5.6e-35 152.5 147 60.5
MSTRG.7059 Avicennia marina HOM05D005238 ORTHO05D006337 7.3e-35 152.1 154 59.1
Manes.06G171800 Manihot esculenta HOM05D005238 ORTHO05D006337 7.3e-35 152.1 161 59.0
Potri.011G143100 Populus trichocarpa HOM05D005238 ORTHO05D006337 1.2e-34 151.4 156 56.4
MBI16_g40051_MAGBIO Magnolia biondii HOM05D005238 ORTHO05D006337 1.6e-34 151.0 156 57.7
Cc05_g16060 Coffea canephora HOM05D005238 ORTHO05D006337 2.1e-34 150.6 152 58.6
Nitab4.5_0008429g0030 Nicotiana tabacum HOM05D005238 ORTHO05D006337 2.1e-34 150.6 147 58.5
A08p31340 Brassica napus HOM05D000001 ORTHO05D000003 2.8e-34 150.2 135 64.4
MD10G1202400 Malus domestica HOM05D005238 ORTHO05D006337 2.8e-34 150.2 161 58.4
TPR.G9757 Trifolium pratense HOM05D005238 ORTHO05D006337 3.6e-34 149.8 157 58.6
Cfa002698 Carpinus fangiana HOM05D005238 ORTHO05D006337 4.7e-34 149.4 156 60.3
Lalb_Chr25g0284971 Lupinus albus HOM05D005238 ORTHO05D006337 6.2e-34 149.1 156 59.6
Phvul.005G056900 Phaseolus vulgaris HOM05D005238 ORTHO05D006337 6.2e-34 149.1 148 57.4
CARHR017080 Cardamine hirsuta HOM05D005238 ORTHO05D006337 1.4e-33 147.9 130 63.1
Medtr2g069490 Medicago truncatula HOM05D005238 ORTHO05D006337 5.2e-33 146.0 155 57.4
TAR627G0595 Trochodendron aralioides HOM05D005238 ORTHO05D006337 5.2e-33 146.0 149 56.4
Ciclev10020284m.g Citrus clementina HOM05D005238 ORTHO05D006337 6.8e-33 145.6 153 57.5
Thhalv10007778m.g Eutrema salsugineum HOM05D005238 ORTHO05D006337 8.9e-33 145.2 119 69.7
VMungo1080G1161 Vigna mungo HOM05D005238 ORTHO05D006337 8.9e-33 145.2 134 59.0
vmacro11663 Vaccinium macrocarpon HOM05D005238 ORTHO05D006337 1.2e-32 144.8 156 56.4
Nn6g31521 Nelumbo nucifera HOM05D005238 ORTHO05D006337 1.5e-32 144.4 153 54.9
Eucgr.F03179 Eucalyptus grandis HOM05D005238 ORTHO05D006337 2.0e-32 144.1 170 55.3
PSO782G5275 Papaver somniferum HOM05D005238 ORTHO05D006337 2.0e-32 144.1 148 58.8
THA.LOC104813616 Tarenaya hassleriana HOM05D005238 ORTHO05D006337 2.0e-32 144.1 158 57.6
C08p44400 Brassica napus HOM05D005238 ORTHO05D006337 3.4e-32 143.3 163 55.8
Carub.0001s1636 Capsella rubella HOM05D005238 ORTHO05D006337 3.4e-32 143.3 164 54.3
CiPaw.12G006900 Carya illinoinensis HOM05D005238 ORTHO05D006337 4.4e-32 142.9 156 55.1
Gohir.D01G026750 Gossypium hirsutum HOM05D005238 ORTHO05D006337 5.8e-32 142.5 140 58.6
Rhsim06G0238800 Rhododendron simsii HOM05D005238 ORTHO05D006337 5.8e-32 142.5 196 50.5
PGR031G1019 Punica granatum HOM05D005238 ORTHO05D006337 1.3e-31 141.4 116 68.1
Thecc.07G152800 Theobroma cacao HOM05D005238 ORTHO05D006337 1.3e-31 141.4 145 55.9
HanXRQChr03g0071621 Helianthus annuus HOM05D005238 ORTHO05D006337 1.7e-31 141.0 134 57.5
PSO170G6647 Papaver somniferum HOM05D005238 ORTHO05D006337 1.7e-31 141.0 144 58.3
Psat1g011080 Pisum sativum HOM05D005238 ORTHO05D006337 1.7e-31 141.0 159 54.7
arahy.Tifrunner.gnm1.ann1.7NR7Q4 Arachis hypogaea HOM05D005238 ORTHO05D006337 3.7e-31 139.8 156 53.8
Gorai.002G036200 Gossypium raimondii HOM05D005238 ORTHO05D006337 3.7e-31 139.8 127 60.6
Glyma.15G255400 Glycine max HOM05D005238 ORTHO05D006337 4.9e-31 139.4 156 53.2
Haze_24974 Corylus avellana HOM05D005238 ORTHO05D006337 6.4e-31 139.0 128 63.3
Dinv19619 Davidia involucrata HOM05D005238 ORTHO05D006337 6.4e-31 139.0 156 54.5
Duzib187G0607 Durio zibethinus HOM05D005238 ORTHO05D006337 6.4e-31 139.0 136 56.6
Gohir.A01G039100 Gossypium hirsutum HOM05D005238 ORTHO05D006337 1.1e-30 138.3 123 61.8
Lalb_Chr20g0108761 Lupinus albus HOM05D005238 ORTHO05D006337 1.4e-30 137.9 162 54.9
PGSC0003DMG400011240 Solanum tuberosum HOM05D005238 ORTHO05D006337 1.4e-30 137.9 160 53.1
BraA09t41454Z Brassica rapa HOM05D005238 ORTHO05D006337 2.4e-30 137.1 162 52.5
AT1G16610 Arabidopsis thaliana HOM05D005238 ORTHO05D006337 3.2e-30 136.7 163 55.8
TWI39G0564 Tripterygium wilfordii HOM05D005238 ORTHO05D006337 4.1e-30 136.3 159 55.3
arahy.Tifrunner.gnm1.ann1.K2PXHZ Arachis hypogaea HOM05D005238 ORTHO05D006337 5.4e-30 136.0 156 52.6
Glyma.08G172000 Glycine max HOM05D005238 ORTHO05D006337 5.4e-30 136.0 156 51.9
Gohir.D13G157300 Gossypium hirsutum HOM05D005238 ORTHO05D006337 5.4e-30 136.0 137 55.5
Ca_03677_v3 Cicer arietinum L. HOM05D005238 ORTHO05D006337 7.0e-30 135.6 121 61.2
RcHm_v2.0_Chr5g0026571 Rosa chinensis HOM05D005238 ORTHO05D006337 7.0e-30 135.6 124 60.5
A09p60810 Brassica napus HOM05D005238 ORTHO05D006337 9.2e-30 135.2 162 53.1
Solyc10g005590.4 Solanum lycopersicum HOM05D005238 ORTHO05D006337 9.2e-30 135.2 163 52.1
Sopen10g001560 Solanum pennellii HOM05D005238 ORTHO05D006337 9.2e-30 135.2 163 52.1
Lj3g0001441 Lotus japonicus HOM05D005238 ORTHO05D006337 1.2e-29 134.8 121 61.2
Manes.14G016200 Manihot esculenta HOM05D005238 ORTHO05D006337 1.2e-29 134.8 121 62.0
Lj8A188G51 Lonicera japonica HOM05D005238 ORTHO05D006337 1.6e-29 134.4 128 58.6
BolC8t51981H Brassica oleracea HOM05D005238 ORTHO05D006337 2.0e-29 134.0 162 51.9
Gorai.013G178100 Gossypium raimondii HOM05D005238 ORTHO05D006337 2.0e-29 134.0 136 55.1
GSVIVG01020424001 Vitis vinifera HOM05D005238 ORTHO05D006337 3.5e-29 133.3 157 54.1
BcaB07g32526 Brassica carinata HOM05D002708 ORTHO05D006337 4.6e-29 132.9 124 61.3
Actinidia07350 Actinidia chinensis HOM05D005238 ORTHO05D006337 7.8e-29 132.1 125 60.8
FvH4_3g15770 Fragaria vesca HOM05D005238 ORTHO05D006337 7.8e-29 132.1 124 60.5
FAN11G0128 Fragaria x ananassa HOM05D006308 ORTHO05D007820 7.8e-29 132.1 124 60.5
PSO017G0328 Papaver somniferum HOM05D005238 ORTHO05D006337 7.8e-29 132.1 125 56.8
SGA_v2.0_scaffold186G40218 Striga asiatica HOM05D005238 ORTHO05D006337 7.8e-29 132.1 154 55.8
CsaV3_4G031880 Cucumis sativus L. HOM05D005238 ORTHO05D006337 5.0e-28 129.4 124 57.3
FAN16G2086 Fragaria x ananassa HOM05D005238 ORTHO05D006337 5.0e-28 129.4 124 60.5
TWI38G1616 Tripterygium wilfordii HOM05D005238 ORTHO05D006337 5.0e-28 129.4 160 53.8
Nitab4.5_0000611g0070 Nicotiana tabacum HOM05D005238 ORTHO05D006337 6.6e-28 129.0 99 69.7
SalBow8G4928 Salvia bowleyana HOM05D005238 ORTHO05D006337 6.6e-28 129.0 143 55.2
FAN21G1113 Fragaria x ananassa HOM05D005238 ORTHO05D006337 8.6e-28 128.6 124 58.9
ClCG11G016430 Citrullus lanatus HOM05D005238 ORTHO05D006337 1.9e-27 127.5 126 56.3
FAN25G0513 Fragaria x ananassa HOM05D006308 ORTHO05D007820 1.9e-27 127.5 150 54.0
Sabra11G0127900 Salix brachista HOM05D001622 ORTHO05D007320 1.9e-27 127.5 205 43.9
ATR1136G058 Amborella trichopoda HOM05D005238 ORTHO05D006337 2.5e-27 127.1 127 55.9
EL10Ac2g03318 Beta vulgaris HOM05D005238 ORTHO05D006337 2.5e-27 127.1 126 58.7
Hma1.2p1_0637F.1_g193540 Hydrangea macrophylla HOM05D005238 ORTHO05D006337 2.5e-27 127.1 150 53.3
CSS0024118 Camellia sinensis var. sinensis HOM05D005238 ORTHO05D006337 3.3e-27 126.7 162 53.1
Peaxi162Scf00018g00105 Petunia axillaris HOM05D005238 ORTHO05D006337 9.5e-27 125.2 114 58.8
Aqoxy6G00105 Aquilegia oxysepala HOM05D005238 ORTHO05D006337 1.6e-26 124.4 154 50.6
unitig_748.g7636 Utricularia gibba HOM05D005238 ORTHO05D006337 3.6e-26 123.2 160 50.6
CDE12G0696 Ceratophyllum demersum HOM05D005238 ORTHO05D006337 8.1e-26 122.1 122 56.6
Hma1.2p1_0334F.1_g128770 Hydrangea macrophylla HOM05D005238 ORTHO05D006337 8.1e-26 122.1 159 49.1
CDE01G0718 Ceratophyllum demersum HOM05D005238 ORTHO05D006337 1.1e-25 121.7 163 47.9
PSO170G0319 Papaver somniferum HOM05D005238 ORTHO05D006337 1.1e-25 121.7 157 48.4
Atru.chr2.1794 Acer truncatum HOM05D005238 ORTHO05D006337 1.4e-25 121.3 177 46.3
SEGI_37868 Sequoiadendron giganteum HOM05D005238 ORTHO05D006337 1.8e-25 120.9 122 55.7
MELO3C026965.2 Cucumis melo HOM05D005238 ORTHO05D006337 3.1e-25 120.2 151 48.3
Lsat_1_v5_gn_7_65541 Lactuca sativa HOM05D005238 ORTHO05D006337 4.0e-25 119.8 118 55.9
AUR62043127 Chenopodium quinoa HOM05D005238 ORTHO05D006337 5.2e-25 119.4 124 57.3
Os01g0959000 Oryza sativa ssp. japonica HOM05D005238 ORTHO05D006337 1.5e-24 117.9 106 60.4
AUR62039165 Chenopodium quinoa HOM05D005238 ORTHO05D006337 2.6e-24 117.1 173 48.0
HPP92_011420 Vanilla planifolia HOM05D005238 ORTHO05D006337 2.6e-24 117.1 141 49.6
DCAR_016821 Daucus carota HOM05D005238 ORTHO05D006337 3.4e-24 116.7 150 53.3
Pp3c8_3970 Physcomitrium patens HOM05D005238 ORTHO05D006337 4.4e-24 116.3 149 48.3
Sed0003933 Sechium edule HOM05D005238 ORTHO05D006337 7.5e-24 115.5 91 63.7
SEGI_03141 Sequoiadendron giganteum HOM05D005238 ORTHO05D006337 7.5e-24 115.5 152 50.0
DCAR_013738 Daucus carota HOM05D005238 ORTHO05D006337 1.7e-23 114.4 149 48.3
Zm00001eb362580 Zea mays HOM05D005238 ORTHO05D006337 1.7e-23 114.4 121 55.4
Os05g0105900 Oryza sativa ssp. japonica HOM05D005238 ORTHO05D006337 8.3e-23 112.1 134 50.7
Zm00001eb140450 Zea mays HOM05D005238 ORTHO05D006337 1.4e-22 111.3 91 62.6
ECA240G2789 Erigeron canadensis HOM05D005238 ORTHO05D006337 4.1e-22 109.8 151 49.7
Pp3c12_22790 Physcomitrium patens HOM05D005238 ORTHO05D006337 5.4e-22 109.4 103 57.3
HPP92_027055 Vanilla planifolia HOM05D005238 ORTHO05D006337 9.2e-22 108.6 226 38.1
Mapoly0011s0143 Marchantia polymorpha HOM05D005238 ORTHO05D006337 1.2e-21 108.2 149 43.6
Duzib268G1788 Durio zibethinus HOM05D005238 ORTHO05D006337 4.6e-21 106.3 104 56.7
SMO271G0048 Selaginella moellendorffii HOM05D005238 ORTHO05D006337 9.5e-19 98.6 105 51.4
CBR_g46302 Chara braunii HOM05D005238 ORTHO05D006337 1.2e-16 91.7 91 54.9
CSS0017399 Camellia sinensis var. sinensis HOM05D005238 ORTHO05D006337 5.8e-16 89.4 102 53.9
Cre03.g164950 Chlamydomonas reinhardtii HOM05D005238 ORTHO05D006337 1.6e-10 71.2 123 40.7
CAN.G24.9 Capsicum annuum HOM05D005238 ORTHO05D006337 1.2e-08 65.1 86 45.3
Pp3c3_28550 Physcomitrium patens HOM05D005238 ORTHO05D006337 2.6e-08 63.9 61 60.7
COL.COLO4_16853 Corchorus olitorius HOM05D000629 ORTHO05D016154 3.4e-08 63.5 55 52.7
Sc06g0001540 Simmondsia chinensis HOM05D005238 ORTHO05D006337 4.4e-08 63.2 113 39.8
SMO364G0823 Selaginella moellendorffii HOM05D005238 ORTHO05D006337 9.9e-08 62.0 69 46.4
PSO063G3689 Papaver somniferum HOM05D005238 ORTHO05D006337 1.1e-06 58.5 72 50.0
AT1G79100 Arabidopsis thaliana HOM05D005238 ORTHO05D006337 1.9e-06 57.8 44 65.9
Rhsim13G0086000 Rhododendron simsii HOM05D000221 ORTHO05D000124 7.1e-06 55.8 74 37.8
FvH4_3g35300 Fragaria vesca HOM05D000142 ORTHO05D000124 9.3e-06 55.5 73 38.4
FAN11G0213 Fragaria x ananassa HOM05D000142 ORTHO05D000124 9.3e-06 55.5 73 38.4


User provided reference genes

Program Settings