Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G16580 Aethionema arabicum HOM05D007081 ORTHO05D008834 3.4e-264 914.4 458 100.0
Thhalv10025133m.g Eutrema salsugineum HOM05D007081 ORTHO05D008834 2.3e-156 556.2 499 63.1
AL7G17230 Arabidopsis lyrata HOM05D007081 ORTHO05D008834 7.7e-152 541.2 559 56.7
AT4G34140 Arabidopsis thaliana HOM05D007081 ORTHO05D008834 4.7e-149 531.9 561 56.7
Carub.0007s0626 Capsella rubella HOM05D007081 ORTHO05D008834 1.4e-148 530.4 563 56.3
Sp7g31890 Schrenkiella parvula HOM05D007081 ORTHO05D008834 6.5e-143 511.5 450 63.6
BraA01t00418Z Brassica rapa HOM05D007081 ORTHO05D008834 1.8e-140 503.4 414 67.4
A01p04290 Brassica napus HOM05D007081 ORTHO05D008834 6.3e-138 495.0 409 67.2
C01p04690 Brassica napus HOM05D007081 ORTHO05D008834 1.2e-136 490.7 473 60.0
BolC1t00453H Brassica oleracea HOM05D007081 ORTHO05D008834 3.5e-136 489.2 473 59.8
THA.LOC104809251 Tarenaya hassleriana HOM05D007081 ORTHO05D008834 3.8e-135 485.7 503 55.7
CANSAT80G0092 Cannabis sativa HOM05D007081 ORTHO05D008834 4.3e-94 349.4 387 51.7
Thecc.03G023800 Theobroma cacao HOM05D007081 ORTHO05D008834 3.8e-90 336.3 495 42.6
Dinv38554 Davidia involucrata HOM05D007081 ORTHO05D008834 1.9e-89 334.0 410 48.3
TAR629G3400 Trochodendron aralioides HOM05D007081 ORTHO05D008834 1.6e-88 330.9 404 49.5
PGR044G1978 Punica granatum HOM05D007081 ORTHO05D008834 4.6e-88 329.3 384 49.2
QL10p008493 Quercus lobata HOM05D007081 ORTHO05D008834 4.3e-86 322.8 398 49.5
QL10p008625 Quercus lobata HOM05D007081 ORTHO05D008834 7.4e-86 322.0 398 49.2
TWI39G1151 Tripterygium wilfordii HOM05D007081 ORTHO05D008834 1.3e-85 321.2 399 46.9
Lj5A128T65 Lonicera japonica HOM05D007081 ORTHO05D008834 4.8e-85 319.3 387 48.8
MD14G1175400 Malus domestica HOM05D007081 ORTHO05D008834 8.1e-85 318.5 415 46.3
Manes.14G062600 Manihot esculenta HOM05D007081 ORTHO05D008834 1.4e-84 317.8 424 46.9
Gorai.005G133700 Gossypium raimondii HOM05D007081 ORTHO05D008834 3.1e-84 316.6 499 42.7
Duzib205G1440 Durio zibethinus HOM05D007081 ORTHO05D008834 6.9e-84 315.5 537 41.0
Gohir.D02G120200 Gossypium hirsutum HOM05D007081 ORTHO05D008834 2.6e-83 313.5 499 42.3
Cfa019177 Carpinus fangiana HOM05D007081 ORTHO05D008834 7.6e-83 312.0 393 49.1
Haze_07555 Corylus avellana HOM05D007081 ORTHO05D008834 9.9e-83 311.6 422 46.9
CAN.G338.9 Capsicum annuum HOM05D007081 ORTHO05D008834 4.9e-82 309.3 386 49.0
FvH4_5g05850 Fragaria vesca HOM05D007081 ORTHO05D008834 9.3e-81 305.1 471 43.1
DCAR_016469 Daucus carota HOM05D007081 ORTHO05D008834 1.6e-80 304.3 399 47.9
Potri.002G197500 Populus trichocarpa HOM05D007081 ORTHO05D008834 3.5e-80 303.1 447 42.7
FAN08G1021 Fragaria x ananassa HOM05D007081 ORTHO05D008834 6.0e-80 302.4 466 42.7
TPR.G31056 Trifolium pratense HOM05D007081 ORTHO05D008834 6.0e-80 302.4 531 38.4
arahy.Tifrunner.gnm1.ann1.4N1ELM Arachis hypogaea HOM05D007081 ORTHO05D008834 7.9e-80 302.0 437 43.9
Solyc03g112510.2 Solanum lycopersicum HOM05D007081 ORTHO05D008834 1.0e-79 301.6 386 47.7
Sopen03g031570 Solanum pennellii HOM05D007081 ORTHO05D008834 1.0e-79 301.6 386 47.7
PGSC0003DMG400018175 Solanum tuberosum HOM05D007081 ORTHO05D008834 1.0e-79 301.6 387 48.1
Eucgr.K02814 Eucalyptus grandis HOM05D007081 ORTHO05D008834 2.3e-79 300.4 386 46.6
Peaxi162Scf00089g01519 Petunia axillaris HOM05D007081 ORTHO05D008834 3.0e-79 300.1 391 47.6
RcHm_v2.0_Chr7g0192971 Rosa chinensis HOM05D007081 ORTHO05D008834 3.0e-79 300.1 395 46.8
SGA_v2.0_scaffold90G27870 Striga asiatica HOM05D007081 ORTHO05D008834 3.0e-79 300.1 387 44.7
MBI10_g32034_MAGBIO Magnolia biondii HOM05D007081 ORTHO05D008834 6.7e-79 298.9 398 45.7
Sc04g0001640 Simmondsia chinensis HOM05D007081 ORTHO05D008834 6.7e-79 298.9 412 45.4
Migut.O00134 Erythranthe guttata HOM05D007081 ORTHO05D008834 8.7e-79 298.5 482 40.5
HanXRQChr04g0101311 Helianthus annuus HOM05D007081 ORTHO05D008834 2.5e-78 297.0 411 44.0
vmacro16631 Vaccinium macrocarpon HOM05D007081 ORTHO05D008834 2.5e-78 297.0 404 44.8
Cc04_g12600 Coffea canephora HOM05D007081 ORTHO05D008834 3.3e-78 296.6 388 45.9
GSVIVG01007682001 Vitis vinifera HOM05D007081 ORTHO05D008834 3.3e-78 296.6 402 45.5
Aqoxy3G02825 Aquilegia oxysepala HOM05D007081 ORTHO05D008834 3.7e-77 293.1 406 44.3
ECA247G4072 Erigeron canadensis HOM05D007081 ORTHO05D008834 3.7e-77 293.1 503 38.8
Ciclev10023760m.g Citrus clementina HOM05D007081 ORTHO05D008834 1.1e-76 291.6 394 44.7
FAN18G1088 Fragaria x ananassa HOM05D007081 ORTHO05D008834 1.1e-76 291.6 507 40.8
Phvul.009G175500 Phaseolus vulgaris HOM05D007081 ORTHO05D008834 1.8e-76 290.8 442 41.9
Ca_16151_v3 Cicer arietinum L. HOM05D007081 ORTHO05D008834 6.9e-76 288.9 397 44.1
Rhsim12G0166600 Rhododendron simsii HOM05D007081 ORTHO05D008834 1.2e-75 288.1 505 39.8
Lsat_1_v5_gn_1_28080 Lactuca sativa HOM05D007081 ORTHO05D008834 2.0e-75 287.3 513 39.4
CiPaw.11G022400 Carya illinoinensis HOM05D007081 ORTHO05D008834 3.4e-75 286.6 504 40.7
Nitab4.5_0010304g0020 Nicotiana tabacum HOM05D007081 ORTHO05D008834 3.8e-74 283.1 503 41.0
Lalb_Chr11g0070341 Lupinus albus HOM05D007081 ORTHO05D008834 8.4e-74 282.0 435 42.1
Oeu040853.3 Olea europaea HOM05D007081 ORTHO05D008834 8.4e-74 282.0 424 40.6
Sabra02G0160000 Salix brachista HOM05D007081 ORTHO05D008834 5.5e-73 279.3 500 38.6
CARHR242710 Cardamine hirsuta HOM05D007081 ORTHO05D008834 1.2e-72 278.1 182 80.2
Psat0s2597g0120 Pisum sativum HOM05D007081 ORTHO05D008834 1.2e-72 278.1 437 40.5
PSO063G2349 Papaver somniferum HOM05D007081 ORTHO05D008834 6.0e-72 275.8 440 42.3
Glyma.04G186500 Glycine max HOM05D007081 ORTHO05D008834 1.1e-70 271.6 432 40.7
Sed0005220 Sechium edule HOM05D007081 ORTHO05D008834 3.7e-69 266.5 458 39.1
arahy.Tifrunner.gnm1.ann1.G5F0QK Arachis hypogaea HOM05D007081 ORTHO05D008834 2.6e-67 260.4 418 41.4
PSO832G3615 Papaver somniferum HOM05D007081 ORTHO05D008834 1.3e-66 258.1 448 40.4
Hund02770 Selenicereus undatus HOM05D007081 ORTHO05D008834 1.3e-66 258.1 407 41.3
unitig_26.g9614 Utricularia gibba HOM05D007081 ORTHO05D008834 1.7e-66 257.7 334 44.9
Nitab4.5_0001284g0100 Nicotiana tabacum HOM05D007081 ORTHO05D008834 5.0e-66 256.1 300 51.0
EL10Ac5g10689 Beta vulgaris HOM05D007081 ORTHO05D008834 6.5e-66 255.8 377 43.5
Lj1g0004270 Lotus japonicus HOM05D007081 ORTHO05D008834 6.5e-66 255.8 488 36.3
Medtr3g077300 Medicago truncatula HOM05D007081 ORTHO05D008834 5.5e-65 252.7 411 40.9
CDE06G1300 Ceratophyllum demersum HOM05D007081 ORTHO05D008834 4.6e-64 249.6 469 38.0
ATR1152G054 Amborella trichopoda HOM05D007081 ORTHO05D008834 1.4e-63 248.1 412 41.5
MELO3C026274.2 Cucumis melo HOM05D007081 ORTHO05D008834 1.5e-62 244.6 408 40.2
Zm00001eb122970 Zea mays HOM05D007081 ORTHO05D008834 1.7e-61 241.1 470 36.8
CsaV3_1G001260 Cucumis sativus L. HOM05D007081 ORTHO05D008834 6.3e-61 239.2 422 39.1
ClCG06G017230 Citrullus lanatus HOM05D007081 ORTHO05D008834 1.4e-60 238.0 390 41.8
AUR62008170 Chenopodium quinoa HOM05D007081 ORTHO05D008834 1.5e-59 234.6 388 41.8
AUR62028747 Chenopodium quinoa HOM05D007081 ORTHO05D008834 3.8e-58 229.9 299 46.2
Cpa.g.sc35.77 Carica papaya HOM05D007081 ORTHO05D008834 6.5e-58 229.2 308 46.8
HPP92_000312 Vanilla planifolia HOM05D007081 ORTHO05D008834 1.2e-56 224.9 463 35.2
FAN04G1276 Fragaria x ananassa HOM05D007081 ORTHO05D008834 6.7e-55 219.2 369 40.7
Ah.02g110780 Amaranthus hybridus HOM05D007081 ORTHO05D008834 2.6e-54 217.2 450 34.7
Os01g0170100 Oryza sativa ssp. japonica HOM05D007081 ORTHO05D008834 1.4e-52 211.5 299 44.8
COL.COLO4_30124 Corchorus olitorius HOM05D007081 ORTHO05D008834 6.1e-48 196.1 499 31.7
HPP92_000296 Vanilla planifolia HOM05D007081 ORTHO05D008834 7.4e-46 189.1 467 32.5
SEGI_13994 Sequoiadendron giganteum HOM05D007081 ORTHO05D008834 2.8e-45 187.2 475 30.1
CSS0002377 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 6.1e-40 169.5 243 43.6
CSS0021917 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 1.0e-39 168.7 268 41.0
Gohir.A03G091750 Gossypium hirsutum HOM05D007081 ORTHO05D008834 1.8e-39 167.9 297 40.4
AagrBONN_evm.TU.Sc2ySwM_117.2172 Anthoceros agrestis HOM05D007081 ORTHO05D008834 1.3e-37 161.8 587 25.9
Mapoly0102s0046 Marchantia polymorpha HOM05D007081 ORTHO05D008834 2.2e-37 161.0 537 28.9
Prupe.5G169300 Prunus persica HOM05D007081 ORTHO05D008834 6.5e-34 149.4 173 49.1
Pp3c25_4990 Physcomitrium patens HOM05D007081 ORTHO05D008834 7.2e-33 146.0 309 32.4
Glyma.06G179301 Glycine max HOM05D007081 ORTHO05D008834 1.7e-29 134.8 240 38.3
HPP92_000303 Vanilla planifolia HOM05D007081 ORTHO05D008834 2.8e-29 134.0 322 32.3
SGA_v2.0_scaffold90G27873 Striga asiatica HOM05D007081 ORTHO05D008834 3.5e-27 127.1 148 48.6
Cpa.g.sc35.79 Carica papaya HOM05D007081 ORTHO05D008834 8.6e-26 122.5 108 59.3
Oeu015893.1 Olea europaea HOM05D007081 ORTHO05D008834 4.5e-19 100.1 193 35.8
HPP92_000304 Vanilla planifolia HOM05D007081 ORTHO05D008834 1.5e-17 95.1 102 50.0
CBR_g4092 Chara braunii HOM05D007081 ORTHO05D000048 9.5e-17 92.4 424 23.8
CSS0048681 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 5.2e-15 86.7 91 52.7
arahy.Tifrunner.gnm1.ann1.JE9H0F Arachis hypogaea HOM05D007081 ORTHO05D008834 7.0e-12 76.3 69 58.0
CSS0035417 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 2.7e-11 74.3 91 47.3
arahy.Tifrunner.gnm1.ann1.R6E3N5 Arachis hypogaea HOM05D005384 ORTHO05D006477 4.3e-09 67.0 206 28.2
arahy.Tifrunner.gnm1.ann1.EB4ABC Arachis hypogaea HOM05D005384 ORTHO05D006477 9.5e-09 65.9 206 27.7
Manes.02G081900 Manihot esculenta HOM05D005384 ORTHO05D006477 9.5e-09 65.9 131 31.3
SEGI_21151 Sequoiadendron giganteum HOM05D007081 ORTHO05D008834 1.2e-08 65.5 79 44.3
Sabra04G0054400 Salix brachista HOM05D005384 ORTHO05D006477 1.1e-07 62.4 130 33.8
Potri.004G081800 Populus trichocarpa HOM05D005384 ORTHO05D006477 1.4e-07 62.0 128 33.6
Solyc08g077310.3 Solanum lycopersicum HOM05D005384 ORTHO05D006477 2.3e-07 61.2 131 33.6
CARHR164150 Cardamine hirsuta HOM05D005384 ORTHO05D006477 4.0e-07 60.5 127 35.4
Nitab4.5_0002055g0100 Nicotiana tabacum HOM05D005384 ORTHO05D006477 4.0e-07 60.5 131 31.3
Nitab4.5_0009567g0040 Nicotiana tabacum HOM05D005384 ORTHO05D006477 4.0e-07 60.5 131 32.1
Migut.E00282 Erythranthe guttata HOM05D005384 ORTHO05D006477 6.8e-07 59.7 134 32.1
Prupe.2G049800 Prunus persica HOM05D005384 ORTHO05D006477 6.8e-07 59.7 123 31.7
Rhsim07G0122100 Rhododendron simsii HOM05D005384 ORTHO05D006477 6.8e-07 59.7 130 32.3
Sopen08g025890 Solanum pennellii HOM05D005384 ORTHO05D006477 6.8e-07 59.7 125 34.4
GSVIVG01013204001 Vitis vinifera HOM05D005384 ORTHO05D006477 6.8e-07 59.7 137 27.0
Haze_14319 Corylus avellana HOM05D005384 ORTHO05D006477 8.9e-07 59.3 128 30.5
Dinv07851 Davidia involucrata HOM05D005384 ORTHO05D006477 8.9e-07 59.3 133 30.1
PSO063G3637 Papaver somniferum HOM05D005384 ORTHO05D006477 8.9e-07 59.3 137 32.1
PSO782G4681 Papaver somniferum HOM05D005384 ORTHO05D006477 8.9e-07 59.3 137 32.1
THA.LOC104801042 Tarenaya hassleriana HOM05D005384 ORTHO05D006477 8.9e-07 59.3 137 31.4
Actinidia22110 Actinidia chinensis HOM05D005384 ORTHO05D006477 1.2e-06 58.9 120 32.5
A09p47220 Brassica napus HOM05D005384 ORTHO05D006477 1.2e-06 58.9 134 31.3
Eucgr.J01644 Eucalyptus grandis HOM05D005384 ORTHO05D006477 1.2e-06 58.9 133 33.1
Potri.017G138500 Populus trichocarpa HOM05D005384 ORTHO05D006477 1.2e-06 58.9 125 32.0
BcaNung06989 Brassica carinata HOM05D005384 ORTHO05D006477 1.5e-06 58.5 134 30.6
C08p29480 Brassica napus HOM05D005384 ORTHO05D006477 1.5e-06 58.5 134 30.6
BolC8t50551H Brassica oleracea HOM05D005384 ORTHO05D006477 1.5e-06 58.5 134 30.6
Medtr8g070990 Medicago truncatula HOM05D005384 ORTHO05D006477 1.5e-06 58.5 129 29.5
vmacro14142 Vaccinium macrocarpon HOM05D005384 ORTHO05D006477 1.5e-06 58.5 126 31.7
CAN.G12.29 Capsicum annuum HOM05D001989 ORTHO05D000346 2.0e-06 58.2 93 39.8
DCAR_016228 Daucus carota HOM05D005384 ORTHO05D006477 2.0e-06 58.2 131 32.8
CSS0000239 Camellia sinensis var. sinensis HOM05D005384 ORTHO05D006477 2.6e-06 57.8 129 30.2
CSS0043592 Camellia sinensis var. sinensis HOM05D005384 ORTHO05D006477 2.6e-06 57.8 129 30.2
CAN.G572.37 Capsicum annuum HOM05D005384 ORTHO05D006477 2.6e-06 57.8 125 32.8
Duzib133G1182 Durio zibethinus HOM05D005384 ORTHO05D006477 2.6e-06 57.8 128 32.8
FAN01G0265 Fragaria x ananassa HOM05D005384 ORTHO05D006477 2.6e-06 57.8 135 30.4
AL5G35270 Arabidopsis lyrata HOM05D005384 ORTHO05D006477 3.4e-06 57.4 136 30.9
AT3G54230 Arabidopsis thaliana HOM05D005384 ORTHO05D006477 3.4e-06 57.4 136 30.9
Carub.0005s2082 Capsella rubella HOM05D005384 ORTHO05D006477 3.4e-06 57.4 136 30.9
Ciclev10010959m.g Citrus clementina HOM05D005384 ORTHO05D006477 3.4e-06 57.4 130 30.0
Lalb_Chr16g0391981 Lupinus albus HOM05D005384 ORTHO05D006477 3.4e-06 57.4 129 29.5
Sc22g0001400 Simmondsia chinensis HOM05D005384 ORTHO05D006477 3.4e-06 57.4 130 31.5
CSS0046614 Camellia sinensis var. sinensis HOM05D005384 ORTHO05D006477 4.4e-06 57.0 133 27.8
Lj4g0003244 Lotus japonicus HOM05D005384 ORTHO05D006477 4.4e-06 57.0 129 28.7
MD02G1270000 Malus domestica HOM05D005384 ORTHO05D006477 4.4e-06 57.0 123 30.9
SMO367G0074 Selaginella moellendorffii HOM05D005384 ORTHO05D006477 4.4e-06 57.0 105 33.3
SGA_v2.0_scaffold14G06795 Striga asiatica HOM05D005384 ORTHO05D006477 4.4e-06 57.0 135 30.4
Glyma.08G266700 Glycine max HOM05D005384 ORTHO05D006477 5.8e-06 56.6 129 28.7
QL02p064091 Quercus lobata HOM05D005384 ORTHO05D006477 5.8e-06 56.6 128 28.9
TPR.G28963 Trifolium pratense HOM05D005384 ORTHO05D006477 5.8e-06 56.6 129 28.7
Zm00001eb306360 Zea mays HOM05D005384 ORTHO05D006477 5.8e-06 56.6 119 33.6
BraA09t40184Z Brassica rapa HOM05D005384 ORTHO05D006477 7.5e-06 56.2 131 30.5
Thecc.04G058100 Theobroma cacao HOM05D005384 ORTHO05D006477 7.5e-06 56.2 127 30.7
ATR0743G115 Amborella trichopoda HOM05D005384 ORTHO05D006477 9.8e-06 55.8 123 32.5
Aqoxy2G03702_Aqoxy2G03703 Aquilegia oxysepala HOM05D005384 ORTHO05D006477 9.8e-06 55.8 134 29.9
Aqoxy3G02532 Aquilegia oxysepala HOM05D005384 ORTHO05D006477 9.8e-06 55.8 134 29.9
COL.COLO4_24446 Corchorus olitorius HOM05D005384 ORTHO05D006477 9.8e-06 55.8 186 25.8
Thhalv10010093m.g Eutrema salsugineum HOM05D005384 ORTHO05D006477 9.8e-06 55.8 130 31.5


User provided reference genes

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