Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG11G14390 Aethionema arabicum HOM05D006350 ORTHO05D007850 0.0e+00 1256.5 612 100.0
Thhalv10012972m.g Eutrema salsugineum HOM05D006350 ORTHO05D007850 5.1e-292 1007.3 629 80.3
A03p07020 Brassica napus HOM05D006350 ORTHO05D007850 2.1e-290 1001.9 619 79.8
Sp6g28900 Schrenkiella parvula HOM05D006350 ORTHO05D007850 2.8e-290 1001.5 627 79.3
C03p08000 Brassica napus HOM05D006350 ORTHO05D007850 6.2e-290 1000.3 621 79.7
BolC3t13297H Brassica oleracea HOM05D006350 ORTHO05D007850 7.6e-288 993.4 622 79.1
AL6G25990 Arabidopsis lyrata HOM05D006350 ORTHO05D007850 3.8e-287 991.1 617 79.7
AT5G15170 Arabidopsis thaliana HOM05D006350 ORTHO05D007850 1.7e-284 982.2 615 79.7
Carub.0006s1334 Capsella rubella HOM05D006350 ORTHO05D007850 4.3e-283 977.6 624 78.5
THA.LOC104821036 Tarenaya hassleriana HOM05D006350 ORTHO05D007850 2.5e-275 951.8 636 73.4
BcaB01g05074 Brassica carinata HOM05D006350 ORTHO05D007850 8.4e-271 936.8 621 76.0
CARHR198140 Cardamine hirsuta HOM05D006350 ORTHO05D007850 1.5e-256 889.4 568 77.1
CSS0007285 Camellia sinensis var. sinensis HOM05D006350 ORTHO05D007850 4.1e-249 864.8 654 63.1
Ciclev10014587m.g Citrus clementina HOM05D006350 ORTHO05D007850 9.1e-249 863.6 632 66.6
CSS0026996 Camellia sinensis var. sinensis HOM05D006350 ORTHO05D007850 1.5e-248 862.8 653 63.1
Thecc.06G214100 Theobroma cacao HOM05D006350 ORTHO05D007850 1.6e-245 852.8 648 64.8
Manes.17G035000 Manihot esculenta HOM05D006350 ORTHO05D007850 7.9e-245 850.5 654 65.0
TWI63G1388 Tripterygium wilfordii HOM05D006350 ORTHO05D007850 6.7e-244 847.4 642 64.8
QL05p075148 Quercus lobata HOM05D006350 ORTHO05D007850 2.4e-241 839.0 672 62.5
MD10G1314700 Malus domestica HOM05D006350 ORTHO05D007850 3.1e-241 838.6 665 62.4
Glyma.04G064300 Glycine max HOM05D006350 ORTHO05D007850 1.2e-240 836.6 646 63.0
COL.COLO4_31726 Corchorus olitorius HOM05D006350 ORTHO05D007850 2.0e-240 835.9 644 63.7
QL93p0073_0722 Quercus lobata HOM05D006350 ORTHO05D007850 3.5e-240 835.1 672 62.2
CiPaw.09G087000 Carya illinoinensis HOM05D006350 ORTHO05D007850 5.9e-240 834.3 656 63.1
Gohir.D10G015200 Gossypium hirsutum HOM05D006350 ORTHO05D007850 1.3e-239 833.2 651 63.4
Potri.004G022500 Populus trichocarpa HOM05D006350 ORTHO05D007850 1.3e-239 833.2 643 64.2
Gorai.011G016800 Gossypium raimondii HOM05D006350 ORTHO05D007850 8.5e-239 830.5 651 63.4
Rhsim02G0112000 Rhododendron simsii HOM05D006350 ORTHO05D007850 8.5e-239 830.5 652 61.8
RcHm_v2.0_Chr5g0003961 Rosa chinensis HOM05D006350 ORTHO05D007850 1.5e-238 829.7 651 63.4
Sopen03g005680 Solanum pennellii HOM05D006350 ORTHO05D007850 1.9e-238 829.3 655 63.2
Gohir.A10G015200 Gossypium hirsutum HOM05D006350 ORTHO05D007850 2.5e-238 828.9 651 63.1
Eucgr.D00813 Eucalyptus grandis HOM05D006350 ORTHO05D007850 2.1e-237 825.9 646 63.0
PGR004G2689 Punica granatum HOM05D006350 ORTHO05D007850 8.0e-237 823.9 652 62.6
Nitab4.5_0000091g0460 Nicotiana tabacum HOM05D006350 ORTHO05D007850 1.0e-236 823.5 646 62.8
Lj1g0012123 Lotus japonicus HOM05D006350 ORTHO05D007850 1.4e-236 823.2 634 64.7
Solyc03g031820.4 Solanum lycopersicum HOM05D006350 ORTHO05D007850 1.8e-236 822.8 651 63.3
CsaV3_6G049260 Cucumis sativus L. HOM05D006350 ORTHO05D007850 6.7e-236 820.8 649 62.1
GSVIVG01012630001 Vitis vinifera HOM05D006350 ORTHO05D007850 1.1e-235 820.1 674 61.1
Ca_07431_v3 Cicer arietinum L. HOM05D006350 ORTHO05D007850 2.0e-235 819.3 636 63.7
FAN21G3377 Fragaria x ananassa HOM05D006350 ORTHO05D007850 2.6e-235 818.9 637 62.8
Prupe.4G026100 Prunus persica HOM05D006350 ORTHO05D007850 2.6e-235 818.9 667 61.3
ClCG01G022180 Citrullus lanatus HOM05D006350 ORTHO05D007850 9.7e-235 817.0 648 62.2
CANSAT80G1390 Cannabis sativa HOM05D006350 ORTHO05D007850 2.8e-234 815.5 666 61.0
CAN.G404.6 Capsicum annuum HOM05D006350 ORTHO05D007850 1.8e-233 812.8 652 62.3
SGA_v2.0_scaffold114G32022 Striga asiatica HOM05D006350 ORTHO05D007850 5.3e-233 811.2 653 61.4
Medtr7g050860 Medicago truncatula HOM05D006350 ORTHO05D007850 9.1e-233 810.4 630 62.9
Phvul.002G048900 Phaseolus vulgaris HOM05D006350 ORTHO05D007850 1.2e-232 810.1 650 60.9
arahy.Tifrunner.gnm1.ann1.SC0FBD Arachis hypogaea HOM05D006350 ORTHO05D007850 2.0e-232 809.3 647 61.1
VMungo1215G2459 Vigna mungo HOM05D006350 ORTHO05D007850 5.9e-232 807.7 654 60.7
Peaxi162Scf00521g00815 Petunia axillaris HOM05D006350 ORTHO05D007850 2.9e-231 805.4 624 63.1
AUR62012643 Chenopodium quinoa HOM05D006350 ORTHO05D007850 3.8e-231 805.1 670 60.6
FvH4_3g02650 Fragaria vesca HOM05D006350 ORTHO05D007850 8.5e-231 803.9 638 61.4
Dinv20017 Davidia involucrata HOM05D006350 ORTHO05D007850 1.9e-230 802.7 636 63.7
DCAR_008125 Daucus carota HOM05D006350 ORTHO05D007850 1.2e-229 800.0 670 60.4
Nitab4.5_0002613g0020 Nicotiana tabacum HOM05D006350 ORTHO05D007850 2.1e-229 799.3 645 61.4
TAR629G2651 Trochodendron aralioides HOM05D006350 ORTHO05D007850 2.1e-229 799.3 680 57.8
HanXRQChr16g0504561 Helianthus annuus HOM05D006350 ORTHO05D007850 4.7e-229 798.1 650 60.0
Sabra04G0012300 Salix brachista HOM05D006350 ORTHO05D007850 2.3e-228 795.8 698 58.3
ECA248G2377 Erigeron canadensis HOM05D006350 ORTHO05D007850 4.0e-228 795.0 652 61.0
Atru.chr10.2148 Acer truncatum HOM05D006350 ORTHO05D007850 3.4e-227 792.0 586 66.7
PSO675G5568 Papaver somniferum HOM05D006350 ORTHO05D007850 1.3e-226 790.0 672 58.5
PSO541G3631 Papaver somniferum HOM05D006350 ORTHO05D007850 2.2e-226 789.3 672 58.2
Duzib160G0024 Durio zibethinus HOM05D006350 ORTHO05D007850 6.3e-226 787.7 641 62.6
Lalb_Chr09g0319631 Lupinus albus HOM05D006350 ORTHO05D007850 8.3e-226 787.3 616 62.2
vmacro15831 Vaccinium macrocarpon HOM05D006350 ORTHO05D007850 2.4e-225 785.8 757 54.0
arahy.Tifrunner.gnm1.ann1.QV9JTX Arachis hypogaea HOM05D006350 ORTHO05D007850 3.1e-225 785.4 687 57.2
Lj1A1225T76 Lonicera japonica HOM05D006350 ORTHO05D007850 3.1e-225 785.4 625 61.0
MBI02_g10104_MAGBIO Magnolia biondii HOM05D006350 ORTHO05D007850 2.7e-224 782.3 670 57.8
MSTRG.15966 Avicennia marina HOM05D006350 ORTHO05D007850 1.3e-223 780.0 651 59.6
Aqoxy4G01993 Aquilegia oxysepala HOM05D006350 ORTHO05D007850 1.5e-222 776.5 648 58.2
Migut.M01281 Erythranthe guttata HOM05D006350 ORTHO05D007850 1.9e-222 776.2 657 58.4
Zm00001eb323120 Zea mays HOM05D006350 ORTHO05D007850 9.2e-217 757.3 662 57.3
TPR.G10193 Trifolium pratense HOM05D006350 ORTHO05D007850 2.3e-212 742.7 591 62.3
Os07g0530100 Oryza sativa ssp. japonica HOM05D006350 ORTHO05D007850 2.2e-210 736.1 677 55.2
Sc05g0008900 Simmondsia chinensis HOM05D006350 ORTHO05D007850 2.9e-210 735.7 485 70.1
EL10Ac8g19892 Beta vulgaris HOM05D006350 ORTHO05D007850 1.0e-207 727.2 665 56.2
Sed0019871 Sechium edule HOM05D006350 ORTHO05D007850 1.0e-207 727.2 500 68.0
MELO3C007370.2 Cucumis melo HOM05D006350 ORTHO05D007850 2.3e-207 726.1 547 65.4
FAN25G1413 Fragaria x ananassa HOM05D006350 ORTHO05D007850 3.4e-203 712.2 636 56.6
Hund23514 Selenicereus undatus HOM05D006350 ORTHO05D007850 1.7e-199 699.9 652 56.7
Psat3g152760 Pisum sativum HOM05D006350 ORTHO05D007850 4.3e-198 695.3 533 63.6
Cc02_g11700 Coffea canephora HOM05D006350 ORTHO05D007850 6.2e-189 664.8 420 73.8
CDE05G1739 Ceratophyllum demersum HOM05D006350 ORTHO05D007850 6.8e-188 661.4 604 55.6
Haze_08403 Corylus avellana HOM05D006350 ORTHO05D007850 1.7e-186 656.8 487 66.1
SEGI_36047 Sequoiadendron giganteum HOM05D006350 ORTHO05D007850 3.2e-185 652.5 489 62.8
PGSC0003DMG400024073 Solanum tuberosum HOM05D006350 ORTHO05D007850 9.3e-177 624.4 500 61.0
AUR62022012 Chenopodium quinoa HOM05D006350 ORTHO05D007850 1.2e-171 607.4 670 49.6
ATR0109G008 Amborella trichopoda HOM05D006350 ORTHO05D007850 3.8e-170 602.4 571 52.7
Lsat_1_v5_gn_1_127601 Lactuca sativa HOM05D006350 ORTHO05D000125 4.9e-170 602.1 519 57.0
SMO117G0269 Selaginella moellendorffii HOM05D006350 ORTHO05D007850 6.4e-170 601.7 474 61.2
unitig_748.g7139 Utricularia gibba HOM05D006350 ORTHO05D007850 2.4e-169 599.7 481 59.9
Cpa.g.sc198.9 Carica papaya HOM05D006350 ORTHO05D007850 4.2e-169 599.0 643 51.5
Mapoly0129s0047 Marchantia polymorpha HOM05D006350 ORTHO05D007850 6.7e-167 591.7 687 47.0
Pp3c10_12100 Physcomitrium patens HOM05D006350 ORTHO05D007850 4.6e-152 542.3 616 47.6
Hund21368 Selenicereus undatus HOM05D006350 ORTHO05D007850 3.9e-143 512.7 329 69.3
Oeu051224.2 Olea europaea HOM05D006350 ORTHO05D007850 3.3e-142 509.6 649 45.5
Dinv17832 Davidia involucrata HOM05D006350 ORTHO05D007850 4.8e-141 505.8 417 60.0
Hund21371 Selenicereus undatus HOM05D006350 ORTHO05D007850 1.2e-112 411.4 289 64.4
Nn1g03636 Nelumbo nucifera HOM05D006350 ORTHO05D007850 6.8e-111 405.6 651 38.2
Eucgr.L01729 Eucalyptus grandis HOM05D006350 ORTHO05D007850 2.5e-89 334.0 454 44.5
HPP92_017615 Vanilla planifolia HOM05D006350 ORTHO05D007850 9.2e-84 315.5 201 71.1
MCO12G349 Micromonas commoda HOM05D006350 ORTHO05D007850 7.8e-83 312.4 511 36.6
MBI04_g30799_MAGBIO Magnolia biondii HOM05D006350 ORTHO05D007850 1.7e-82 311.2 368 47.0
Dinv17831 Davidia involucrata HOM05D006350 ORTHO05D007850 3.3e-73 280.4 194 72.2
PRCOL_00001871 Prasinoderma coloniale HOM05D006350 ORTHO05D007850 3.6e-72 276.9 462 36.8
VMungo1383G3417 Vigna mungo HOM05D006350 ORTHO05D007850 6.0e-67 259.6 175 66.9
SMO172G0198 Selaginella moellendorffii HOM05D006350 ORTHO05D007850 4.3e-65 253.4 293 47.1
Cre01.g053200 Chlamydomonas reinhardtii HOM05D006350 ORTHO05D007850 1.7e-58 231.5 558 30.5
VMungo0251G1161 Vigna mungo HOM05D006350 ORTHO05D007850 1.4e-52 211.8 129 71.3
Cc02_g11710 Coffea canephora HOM05D006350 ORTHO05D007850 4.0e-39 167.2 236 43.6
HPP92_017616 Vanilla planifolia HOM05D006350 ORTHO05D007850 2.1e-35 154.8 269 36.4
SMO198G0039 Selaginella moellendorffii HOM05D006350 ORTHO05D007850 4.5e-30 137.1 148 45.9
CBR_g28581 Chara braunii HOM05D000019 ORTHO05D000048 2.7e-27 127.9 132 50.0
unitig_748.g7138 Utricularia gibba HOM05D006350 ORTHO05D007850 1.4e-20 105.5 109 49.5
Nn1g00065 Nelumbo nucifera HOM05D006350 ORTHO05D007850 4.2e-20 104.0 126 41.3
HPP92_017614 Vanilla planifolia HOM05D006350 ORTHO05D007850 6.1e-19 100.1 93 55.9
Sc05g0008890 Simmondsia chinensis HOM05D006350 ORTHO05D007850 6.7e-18 96.7 106 50.9
Cfa024753 Carpinus fangiana HOM05D006350 ORTHO05D007850 5.7e-17 93.6 310 27.7
C03p17100 Brassica napus HOM05D006350 ORTHO05D007850 2.4e-15 88.2 70 62.9
BolC3t14124H Brassica oleracea HOM05D006350 ORTHO05D007850 3.1e-15 87.8 70 62.9
PSO017G2510 Papaver somniferum HOM05D007034 ORTHO05D008665 1.2e-11 75.9 218 27.5
ATR0582G190 Amborella trichopoda HOM05D007034 ORTHO05D008665 2.1e-11 75.1 215 26.0
arahy.Tifrunner.gnm1.ann1.XWK03B Arachis hypogaea HOM05D007034 ORTHO05D008665 1.0e-10 72.8 196 24.5
GSVIVG01014061001 Vitis vinifera HOM05D007034 ORTHO05D008665 1.4e-10 72.4 197 26.4
arahy.Tifrunner.gnm1.ann1.FYEN8G Arachis hypogaea HOM05D007034 ORTHO05D008665 2.3e-10 71.6 196 24.5
Glyma.08G005800 Glycine max HOM05D007034 ORTHO05D008665 2.3e-10 71.6 197 24.9
PSO017G4759 Papaver somniferum HOM05D007034 ORTHO05D008665 2.3e-10 71.6 215 26.0
Aqoxy5G02954 Aquilegia oxysepala HOM05D007034 ORTHO05D008665 3.0e-10 71.2 201 26.4
Nn1g07028 Nelumbo nucifera HOM05D006350 ORTHO05D007850 3.0e-10 71.2 49 63.3
HPP92_006434 Vanilla planifolia HOM05D007034 ORTHO05D008665 3.0e-10 71.2 206 26.2
Lj4g0024388 Lotus japonicus HOM05D007034 ORTHO05D008665 5.2e-10 70.5 197 24.4
AUR62029782 Chenopodium quinoa HOM05D007034 ORTHO05D008665 6.7e-10 70.1 221 24.4
Prupe.5G138100 Prunus persica HOM05D007034 ORTHO05D008665 6.7e-10 70.1 198 26.3
Cfa024022 Carpinus fangiana HOM05D006350 ORTHO05D007850 1.1e-09 69.3 484 22.7
Ca_16833_v3 Cicer arietinum L. HOM05D007034 ORTHO05D008665 2.0e-09 68.6 215 24.2
RcHm_v2.0_Chr7g0188231 Rosa chinensis HOM05D007034 ORTHO05D008665 2.6e-09 68.2 213 24.4
AT5G07400 Arabidopsis thaliana HOM05D007034 ORTHO05D008665 3.3e-09 67.8 218 24.8
VMungo0251G1097 Vigna mungo HOM05D007034 ORTHO05D008665 3.3e-09 67.8 203 25.1
Psat7g040600 Pisum sativum HOM05D007034 ORTHO05D008665 4.4e-09 67.4 213 24.4
FvH4_5g10030 Fragaria vesca HOM05D007034 ORTHO05D008665 5.7e-09 67.0 194 25.3
MBI11_g45190_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 5.7e-09 67.0 196 25.5
TWI23G0512 Tripterygium wilfordii HOM05D007034 ORTHO05D008665 5.7e-09 67.0 198 24.2
FAN08G2641 Fragaria x ananassa HOM05D007034 ORTHO05D008665 9.7e-09 66.2 194 24.7
MD06G1128300 Malus domestica HOM05D007034 ORTHO05D008665 9.7e-09 66.2 226 21.2
QL10p035731 Quercus lobata HOM05D007034 ORTHO05D008665 9.7e-09 66.2 192 27.1
Medtr8g095490 Medicago truncatula HOM05D007034 ORTHO05D008665 1.3e-08 65.9 214 22.9
Os04g0403400 Oryza sativa ssp. japonica HOM05D007034 ORTHO05D008665 1.3e-08 65.9 185 24.3
Zm00001eb084530 Zea mays HOM05D007034 ORTHO05D008665 1.3e-08 65.9 199 25.1
Sp6g35470 Schrenkiella parvula HOM05D007034 ORTHO05D008665 1.7e-08 65.5 194 25.3
THA.LOC104818293 Tarenaya hassleriana HOM05D007034 ORTHO05D008665 1.7e-08 65.5 198 28.8
Dinv13693 Davidia involucrata HOM05D007034 ORTHO05D008665 2.2e-08 65.1 198 24.2
FAN18G0345 Fragaria x ananassa HOM05D007034 ORTHO05D008665 2.2e-08 65.1 193 24.9
Pp3c20_13830 Physcomitrium patens HOM05D006350 ORTHO05D007850 2.2e-08 65.1 118 38.1
Thecc.03G143600 Theobroma cacao HOM05D007034 ORTHO05D008665 2.2e-08 65.1 193 26.9
TPR.G12786 Trifolium pratense HOM05D007034 ORTHO05D008665 2.2e-08 65.1 214 23.4
HanXRQChr05g0154511 Helianthus annuus HOM05D007034 ORTHO05D008665 2.8e-08 64.7 198 25.8
Nn1g07027 Nelumbo nucifera HOM05D006350 ORTHO05D007850 2.8e-08 64.7 67 44.8
Nn3g16191 Nelumbo nucifera HOM05D007034 ORTHO05D008665 2.8e-08 64.7 215 23.7
Sc10g0005150 Simmondsia chinensis HOM05D007034 ORTHO05D008665 4.8e-08 63.9 226 26.5
Actinidia18277 Actinidia chinensis HOM05D007034 ORTHO05D008665 6.3e-08 63.5 197 25.4
AagrBONN_evm.TU.Sc2ySwM_340.151 Anthoceros agrestis HOM05D007034 ORTHO05D008665 6.3e-08 63.5 213 24.9
Ah.15g089920 Amaranthus hybridus HOM05D007034 ORTHO05D008665 8.2e-08 63.2 210 24.8
Carub.0006s0637 Capsella rubella HOM05D007034 ORTHO05D008665 1.1e-07 62.8 222 22.1
ECA246G4515 Erigeron canadensis HOM05D007034 ORTHO05D008665 1.1e-07 62.8 191 27.2
Lalb_Chr07g0183941 Lupinus albus HOM05D007034 ORTHO05D008665 1.1e-07 62.8 202 21.8
EL10Ac7g17117 Beta vulgaris HOM05D007034 ORTHO05D008665 1.8e-07 62.0 214 22.4
Cc04_g05570 Coffea canephora HOM05D007034 ORTHO05D008665 2.4e-07 61.6 198 23.7
Thhalv10012509m.g Eutrema salsugineum HOM05D007034 ORTHO05D008665 2.4e-07 61.6 197 22.8
Lsat_1_v5_gn_5_9280 Lactuca sativa HOM05D007034 ORTHO05D008665 2.4e-07 61.6 198 25.3
Lj5C84G9 Lonicera japonica HOM05D007034 ORTHO05D008665 2.4e-07 61.6 199 24.1
SMO139G0138 Selaginella moellendorffii HOM05D007034 ORTHO05D008665 2.4e-07 61.6 211 24.6
AL6G17700 Arabidopsis lyrata HOM05D007034 ORTHO05D008665 3.1e-07 61.2 202 25.2
Eucgr.G00023 Eucalyptus grandis HOM05D007034 ORTHO05D008665 3.1e-07 61.2 219 24.7
Manes.06G128800 Manihot esculenta HOM05D007034 ORTHO05D008665 4.1e-07 60.8 119 28.6
Rhsim08G0200400 Rhododendron simsii HOM05D007034 ORTHO05D008665 4.1e-07 60.8 203 24.6
CBR_g36305 Chara braunii HOM05D007034 ORTHO05D008665 5.3e-07 60.5 224 22.8
vmacro19093 Vaccinium macrocarpon HOM05D007034 ORTHO05D008665 5.3e-07 60.5 207 24.2
TAR374G0491 Trochodendron aralioides HOM05D007034 ORTHO05D008665 1.2e-06 59.3 121 31.4
Potri.012G111800 Populus trichocarpa HOM05D007034 ORTHO05D008665 2.6e-06 58.2 122 28.7
Aa31LG3G18970 Aethionema arabicum HOM05D007034 ORTHO05D008665 3.5e-06 57.8 121 25.6
BcaB05g21619 Brassica carinata HOM05D007034 ORTHO05D008665 3.5e-06 57.8 213 23.5
PGR042G1727 Punica granatum HOM05D007034 ORTHO05D008665 3.5e-06 57.8 203 24.6
Atru.BG.50.p Acer truncatum HOM05D007034 ORTHO05D008665 4.5e-06 57.4 220 21.8
BcaB01g05124 Brassica carinata HOM05D048180 ORTHO05D039854 4.5e-06 57.4 104 43.3
C03p07520 Brassica napus HOM05D048180 ORTHO05D039854 4.5e-06 57.4 104 43.3
arahy.Tifrunner.gnm1.ann1.PQF71L Arachis hypogaea HOM05D004293 ORTHO05D007850 7.7e-06 56.6 40 65.0


User provided reference genes

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