Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62016379 Chenopodium quinoa HOM05D005526 ORTHO05D006802 9.8e-231 803.1 411 100.0
EL10Ac9g21940 Beta vulgaris HOM05D005526 ORTHO05D006802 2.3e-203 712.2 412 88.8
AUR62011560 Chenopodium quinoa HOM05D005526 ORTHO05D006802 4.3e-202 708.0 416 90.1
Hund06580 Selenicereus undatus HOM05D005526 ORTHO05D006802 1.6e-193 679.5 418 84.2
Sc10g0005720 Simmondsia chinensis HOM05D005526 ORTHO05D006802 1.3e-169 600.1 409 77.0
Dinv38097 Davidia involucrata HOM05D005526 ORTHO05D006802 7.1e-157 557.8 439 68.1
Atru.chr1.3093 Acer truncatum HOM05D005526 ORTHO05D006802 1.0e-155 553.9 435 69.2
Cfa002011 Carpinus fangiana HOM05D005526 ORTHO05D006802 2.3e-155 552.7 438 68.7
TAR383G0281 Trochodendron aralioides HOM05D005526 ORTHO05D006802 1.9e-154 549.7 437 66.8
Glyma.15G010400 Glycine max HOM05D005526 ORTHO05D006802 9.7e-154 547.4 439 66.7
Nn2g11952 Nelumbo nucifera HOM05D005526 ORTHO05D006802 2.2e-153 546.2 437 66.8
Ciclev10025661m.g Citrus clementina HOM05D005526 ORTHO05D006802 6.3e-153 544.7 437 68.0
Manes.04G116500 Manihot esculenta HOM05D005526 ORTHO05D006802 8.2e-153 544.3 396 72.2
Glyma.13G363400 Glycine max HOM05D005526 ORTHO05D006802 4.1e-152 542.0 439 66.1
Actinidia08810 Actinidia chinensis HOM05D005526 ORTHO05D006802 1.5e-151 540.0 439 66.3
Thecc.06G073100 Theobroma cacao HOM05D005526 ORTHO05D006802 1.5e-151 540.0 436 66.5
Ca_01085_v3 Cicer arietinum L. HOM05D005526 ORTHO05D006802 2.0e-151 539.7 438 67.4
Prupe.3G079900 Prunus persica HOM05D005526 ORTHO05D006802 7.7e-151 537.7 448 66.7
Lj3g0017842 Lotus japonicus HOM05D005526 ORTHO05D006802 1.3e-150 537.0 437 66.6
TWI18G0833 Tripterygium wilfordii HOM05D005526 ORTHO05D006802 1.3e-150 537.0 440 67.0
Duzib235G1092 Durio zibethinus HOM05D005526 ORTHO05D006802 5.0e-150 535.0 436 66.1
FvH4_6g30340 Fragaria vesca HOM05D005526 ORTHO05D006802 8.5e-150 534.3 436 66.7
CsaV3_4G001390 Cucumis sativus L. HOM05D005526 ORTHO05D006802 1.1e-149 533.9 437 64.8
CSS0037293 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 3.2e-149 532.3 437 64.5
Ah.01g020810 Amaranthus hybridus HOM05D005526 ORTHO05D006802 5.5e-149 531.6 422 71.8
CiPaw.01G244400 Carya illinoinensis HOM05D005526 ORTHO05D006802 5.5e-149 531.6 438 66.0
MD09G1221000 Malus domestica HOM05D005526 ORTHO05D006802 9.4e-149 530.8 439 67.2
FAN02G2127 Fragaria x ananassa HOM05D005526 ORTHO05D006802 1.6e-148 530.0 436 66.1
TWI75G1755 Tripterygium wilfordii HOM05D005526 ORTHO05D006802 2.7e-148 529.3 440 66.8
Medtr2g103110 Medicago truncatula HOM05D005526 ORTHO05D006802 3.6e-148 528.9 443 65.5
ECA234G2940 Erigeron canadensis HOM05D005526 ORTHO05D006802 6.7e-147 524.6 426 66.2
Gohir.D06G117200 Gossypium hirsutum HOM05D005526 ORTHO05D006802 2.0e-146 523.1 437 65.9
THA.LOC104812497 Tarenaya hassleriana HOM05D005526 ORTHO05D006802 2.0e-146 523.1 433 65.6
Cpa.g.sc336.8 Carica papaya HOM05D005526 ORTHO05D006802 2.5e-146 522.7 416 66.8
Eucgr.J03045 Eucalyptus grandis HOM05D005526 ORTHO05D006802 3.3e-146 522.3 433 66.5
MBI01_g11875_MAGBIO Magnolia biondii HOM05D005526 ORTHO05D006802 3.3e-146 522.3 441 66.7
Gohir.A06G112600 Gossypium hirsutum HOM05D005526 ORTHO05D006802 4.3e-146 521.9 437 65.4
Gorai.010G134800 Gossypium raimondii HOM05D005526 ORTHO05D006802 5.7e-146 521.5 437 65.7
Phvul.005G174900 Phaseolus vulgaris HOM05D005526 ORTHO05D006802 7.4e-146 521.2 431 65.4
Sed0002477 Sechium edule HOM05D005526 ORTHO05D006802 3.7e-145 518.8 437 63.2
SalBow2G2365 Salvia bowleyana HOM05D005526 ORTHO05D006802 8.2e-145 517.7 434 65.2
Solyc06g067990.3 Solanum lycopersicum HOM05D005526 ORTHO05D006802 1.2e-143 513.8 431 66.8
PSO170G3249 Papaver somniferum HOM05D005526 ORTHO05D006802 5.9e-143 511.5 433 63.5
CANSAT56G0953 Cannabis sativa HOM05D005526 ORTHO05D006802 7.7e-143 511.1 433 65.4
Potri.001G172800 Populus trichocarpa HOM05D005526 ORTHO05D006802 1.0e-142 510.8 439 64.5
arahy.Tifrunner.gnm1.ann1.FYL3MV Arachis hypogaea HOM05D005526 ORTHO05D006802 3.8e-142 508.8 442 64.0
PGR031G1627 Punica granatum HOM05D005526 ORTHO05D006802 3.8e-142 508.8 441 64.2
Aqoxy7G02084 Aquilegia oxysepala HOM05D005526 ORTHO05D006802 5.0e-142 508.4 431 66.1
Migut.D01055 Erythranthe guttata HOM05D005526 ORTHO05D006802 1.4e-141 506.9 382 69.1
MSTRG.9436 Avicennia marina HOM05D005526 ORTHO05D006802 7.2e-141 504.6 404 63.6
DCAR_025483 Daucus carota HOM05D005526 ORTHO05D006802 5.7e-138 495.0 405 65.2
MD17G1204400 Malus domestica HOM05D005526 ORTHO05D006802 4.8e-137 491.9 520 56.5
VMungo1080G0636 Vigna mungo HOM05D005526 ORTHO05D006802 1.1e-136 490.7 424 61.6
CARHR074270 Cardamine hirsuta HOM05D005526 ORTHO05D006802 2.0e-135 486.5 410 64.4
QL05p027824 Quercus lobata HOM05D005526 ORTHO05D006802 2.6e-135 486.1 521 54.5
Rhsim12G0193000 Rhododendron simsii HOM05D005526 ORTHO05D006802 5.0e-134 481.9 538 53.2
Dinv30571 Davidia involucrata HOM05D005526 ORTHO05D006802 3.2e-133 479.2 360 69.2
SGA_v2.0_scaffold16G07615 Striga asiatica HOM05D005526 ORTHO05D006802 3.2e-133 479.2 386 65.0
vmacro16915 Vaccinium macrocarpon HOM05D005526 ORTHO05D006802 4.2e-133 478.8 558 52.5
Sp5g35600 Schrenkiella parvula HOM05D005526 ORTHO05D006802 4.7e-132 475.3 411 61.8
Thhalv10018648m.g Eutrema salsugineum HOM05D005526 ORTHO05D006802 4.4e-130 468.8 409 61.9
AT3G06820 Arabidopsis thaliana HOM05D005526 ORTHO05D006802 2.0e-127 459.9 386 64.2
FAN09G0405 Fragaria x ananassa HOM05D005526 ORTHO05D006802 5.9e-127 458.4 436 60.6
A07p26570 Brassica napus HOM05D005526 ORTHO05D006802 1.7e-126 456.8 416 60.8
BcaB02g07290 Brassica carinata HOM05D005526 ORTHO05D006802 2.2e-126 456.4 427 59.3
AT1G80210 Arabidopsis thaliana HOM05D005526 ORTHO05D006802 6.5e-126 454.9 367 65.1
BcaC08g45297 Brassica carinata HOM05D005526 ORTHO05D006802 8.5e-126 454.5 420 59.8
C06p28990 Brassica napus HOM05D005526 ORTHO05D006802 1.5e-125 453.8 421 59.9
BolC6t38065H Brassica oleracea HOM05D005526 ORTHO05D006802 5.5e-125 451.8 423 59.3
ClCG07G012810 Citrullus lanatus HOM05D005526 ORTHO05D006802 2.8e-121 439.5 440 57.0
Peaxi162Scf00207g00731 Petunia axillaris HOM05D005526 ORTHO05D006802 4.1e-120 435.6 415 58.8
Lsat_1_v5_gn_5_132520 Lactuca sativa HOM05D005526 ORTHO05D006802 3.8e-118 429.1 418 61.0
Oeu052283.1 Olea europaea HOM05D005526 ORTHO05D006802 3.8e-118 429.1 439 57.9
SEGI_35764 Sequoiadendron giganteum HOM05D005526 ORTHO05D006802 8.5e-118 427.9 430 55.3
GSVIVG01017251001 Vitis vinifera HOM05D005526 ORTHO05D006802 4.2e-117 425.6 358 64.2
CDE02G1452 Ceratophyllum demersum HOM05D005526 ORTHO05D006802 5.5e-117 425.2 424 57.8
CiPaw.02G154800 Carya illinoinensis HOM05D005526 ORTHO05D006802 1.2e-116 424.1 323 71.2
arahy.Tifrunner.gnm1.ann1.IMA97E Arachis hypogaea HOM05D005526 ORTHO05D006802 1.0e-115 421.0 463 55.3
Lj5C68G25 Lonicera japonica HOM05D005526 ORTHO05D006802 1.8e-115 420.2 361 64.5
Lalb_Chr14g0373681 Lupinus albus HOM05D005526 ORTHO05D006802 3.0e-115 419.5 355 64.8
BraA07t30300Z Brassica rapa HOM05D005526 ORTHO05D006802 5.2e-115 418.7 402 57.7
Aa31LG4G500 Aethionema arabicum HOM05D005526 ORTHO05D006802 8.8e-115 417.9 408 59.1
unitig_899.g14780 Utricularia gibba HOM05D005526 ORTHO05D006802 1.2e-114 417.5 384 58.6
Nitab4.5_0000620g0060 Nicotiana tabacum HOM05D005526 ORTHO05D006802 1.4e-112 410.6 410 58.0
Zm00001eb294490 Zea mays HOM05D005526 ORTHO05D006802 1.4e-112 410.6 431 55.9
Os05g0542600 Oryza sativa ssp. japonica HOM05D005526 ORTHO05D006802 5.4e-112 408.7 433 53.1
MELO3C017901.2 Cucumis melo HOM05D005526 ORTHO05D006802 1.6e-111 407.1 357 60.5
RcHm_v2.0_Chr2g0136621 Rosa chinensis HOM05D005526 ORTHO05D006802 2.7e-111 406.4 355 62.8
Nitab4.5_0013710g0010 Nicotiana tabacum HOM05D005526 ORTHO05D006802 7.7e-111 404.8 417 57.8
CAN.G395.46 Capsicum annuum HOM05D005526 ORTHO05D006802 1.0e-110 404.4 349 64.5
HanXRQChr10g0303071 Helianthus annuus HOM05D005526 ORTHO05D006802 1.3e-110 404.1 349 63.9
Sopen06g025270 Solanum pennellii HOM05D005526 ORTHO05D006802 8.6e-110 401.4 351 65.0
CSS0003126 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 2.1e-108 396.7 362 61.6
COL.COLO4_12896 Corchorus olitorius HOM05D005526 ORTHO05D006802 6.1e-108 395.2 362 61.6
Psat5g300440 Pisum sativum HOM05D005526 ORTHO05D006802 2.0e-106 390.2 357 61.3
Cc04_g04020 Coffea canephora HOM05D005526 ORTHO05D006802 1.1e-104 384.4 354 59.6
Oeu063802.2 Olea europaea HOM05D005526 ORTHO05D006802 2.4e-104 383.3 341 62.8
TPR.G37284 Trifolium pratense HOM05D005526 ORTHO05D006802 3.3e-101 372.9 366 56.8
Pp3c27_4740 Physcomitrium patens HOM05D005526 ORTHO05D006802 1.2e-100 370.9 370 55.1
Mapoly0053s0043 Marchantia polymorpha HOM05D005526 ORTHO05D006802 4.9e-97 359.0 411 49.6
AL2G41300 Arabidopsis lyrata HOM05D005526 ORTHO05D006802 6.4e-97 358.6 325 59.7
AL3G17940 Arabidopsis lyrata HOM05D005526 ORTHO05D006802 4.1e-96 355.9 331 58.3
Carub.0002s2731 Capsella rubella HOM05D005526 ORTHO05D006802 1.9e-93 347.1 329 56.8
SGA_v2.0_scaffold37G14789 Striga asiatica HOM05D005526 ORTHO05D006802 1.8e-91 340.5 391 53.2
CBR_g46861 Chara braunii HOM05D005526 ORTHO05D006802 5.2e-91 339.0 434 46.5
CDE01G0292 Ceratophyllum demersum HOM05D005526 ORTHO05D006802 7.8e-87 325.1 425 48.2
HPP92_009843 Vanilla planifolia HOM05D005526 ORTHO05D006802 8.9e-83 311.6 359 51.5
ATR1156G007 Amborella trichopoda HOM05D005526 ORTHO05D006802 8.6e-78 295.0 323 54.2
Oeu014842.2 Olea europaea HOM05D005526 ORTHO05D006802 3.1e-67 260.0 319 48.9
Haze_16513 Corylus avellana HOM05D005526 ORTHO05D006802 4.4e-66 256.1 209 66.5
Zm00001eb342510 Zea mays HOM05D005526 ORTHO05D006802 1.6e-63 247.7 204 65.7
FAN14G4362 Fragaria x ananassa HOM05D005526 ORTHO05D006802 4.0e-59 233.0 300 50.3
Haze_16512 Corylus avellana HOM05D005526 ORTHO05D006802 1.1e-56 224.9 230 58.3
SMO196G0028 Selaginella moellendorffii HOM05D005526 ORTHO05D006802 1.1e-51 208.4 326 38.3
AagrBONN_evm.TU.Sc2ySwM_368.2431 Anthoceros agrestis HOM05D005526 ORTHO05D006802 1.7e-49 201.1 268 43.7
Cre11.g475400 Chlamydomonas reinhardtii HOM05D005526 ORTHO05D006802 1.6e-44 184.5 368 35.9
Sed0012845 Sechium edule HOM05D005526 ORTHO05D006802 2.5e-32 144.1 316 34.5
TPR.G37278 Trifolium pratense HOM05D005526 ORTHO05D006802 6.7e-30 136.0 79 84.8
FAN05G1558 Fragaria x ananassa HOM05D005526 ORTHO05D006802 1.7e-28 131.3 79 84.8
Sabra01G0138900 Salix brachista HOM05D005526 ORTHO05D006802 6.3e-28 129.4 79 81.0
RcHm_v2.0_Chr2g0136631 Rosa chinensis HOM05D005526 ORTHO05D006802 8.2e-28 129.0 79 83.5
ATR1156G076 Amborella trichopoda HOM05D005526 ORTHO05D006802 1.1e-27 128.6 79 83.5
Lalb_Chr14g0373671 Lupinus albus HOM05D005526 ORTHO05D006802 1.8e-27 127.9 79 78.5
Lj5A68T70 Lonicera japonica HOM05D005526 ORTHO05D006802 5.3e-27 126.3 79 79.7
CSS0009710 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 9.1e-27 125.6 79 79.7
GSVIVG01017250001 Vitis vinifera HOM05D005526 ORTHO05D006802 9.1e-27 125.6 72 86.1
Cc04_g04010 Coffea canephora HOM05D005526 ORTHO05D006802 1.5e-26 124.8 79 81.0
Sopen06g025280 Solanum pennellii HOM05D005526 ORTHO05D006802 1.3e-25 121.7 79 75.9
PGSC0003DMG401028513 Solanum tuberosum HOM05D005526 ORTHO05D006802 1.3e-25 121.7 79 75.9
HanXRQChr10g0303081 Helianthus annuus HOM05D005526 ORTHO05D006802 1.7e-25 121.3 79 78.5
AagrBONN_evm.TU.Sc2ySwM_368.2432 Anthoceros agrestis HOM05D005526 ORTHO05D006802 1.4e-24 118.2 79 73.4
SalBow8G0881 Salvia bowleyana HOM05D005526 ORTHO05D006802 7.7e-18 95.9 112 51.8
Pp3c25_2940 Physcomitrium patens HOM05D005526 ORTHO05D311957 5.7e-13 79.7 98 45.9
Gohir.A10G140700 Gossypium hirsutum HOM05D000009 ORTHO05D000008 1.8e-11 74.7 51 72.5
Pp3c6_24500 Physcomitrium patens HOM05D005526 ORTHO05D006802 1.0e-09 68.9 90 45.6
CAN.G395.47 Capsicum annuum HOM05D005526 ORTHO05D006802 1.6e-07 61.6 44 68.2
COL.COLO4_12895 Corchorus olitorius HOM05D005526 ORTHO05D006802 6.1e-07 59.7 30 90.0


User provided reference genes

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