Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62005273 Chenopodium quinoa HOM05D005935 ORTHO05D007012 3.1e-75 285.4 187 100.0
AUR62000683 Chenopodium quinoa HOM05D005935 ORTHO05D007012 2.1e-71 272.7 198 93.9
Ah.06g188880 Amaranthus hybridus HOM05D005935 ORTHO05D007012 5.9e-66 254.6 197 81.2
EL10Ac4g09829 Beta vulgaris HOM05D005935 ORTHO05D007012 2.7e-63 245.7 199 79.4
GSVIVG01031220001 Vitis vinifera HOM05D005935 ORTHO05D007012 4.7e-63 245.0 198 78.3
Lalb_Chr18g0046051 Lupinus albus HOM05D005935 ORTHO05D007012 1.8e-62 243.0 196 84.7
Sed0001365 Sechium edule HOM05D005935 ORTHO05D007012 4.0e-62 241.9 198 74.2
SalBow3G1520 Salvia bowleyana HOM05D005935 ORTHO05D007012 8.8e-62 240.7 198 76.3
Lsat_1_v5_gn_5_102820 Lactuca sativa HOM05D005935 ORTHO05D007012 1.5e-61 240.0 197 77.2
Lalb_Chr04g0260471 Lupinus albus HOM05D005935 ORTHO05D007012 1.5e-61 240.0 196 78.1
ClCG02G015080 Citrullus lanatus HOM05D005935 ORTHO05D007012 2.0e-61 239.6 198 74.7
COL.COLO4_04140 Corchorus olitorius HOM05D005935 ORTHO05D007012 2.0e-61 239.6 196 82.7
MELO3C004198.2 Cucumis melo HOM05D005935 ORTHO05D007012 2.0e-61 239.6 198 74.7
MD04G1195100 Malus domestica HOM05D005935 ORTHO05D007012 2.0e-61 239.6 198 75.8
SGA_v2.0_scaffold80G25879 Striga asiatica HOM05D005935 ORTHO05D007012 2.6e-61 239.2 197 77.2
MSTRG.27950 Avicennia marina HOM05D005935 ORTHO05D007012 3.3e-61 238.8 198 76.8
CsaV3_2G006940 Cucumis sativus L. HOM05D005935 ORTHO05D007012 4.4e-61 238.4 198 74.2
SGA_v2.0_scaffold81G26126 Striga asiatica HOM05D005935 ORTHO05D007012 7.5e-61 237.7 198 76.3
CANSAT54G1507 Cannabis sativa HOM05D005935 ORTHO05D007012 1.3e-60 236.9 196 83.7
Carub.0003s0513 Capsella rubella HOM05D005935 ORTHO05D007012 1.3e-60 236.9 197 80.2
Lj1g0021681 Lotus japonicus HOM05D005935 ORTHO05D007012 1.7e-60 236.5 197 78.2
Prupe.6G314900 Prunus persica HOM05D005935 ORTHO05D007012 1.7e-60 236.5 198 78.3
Cpa.g.sc48.144 Carica papaya HOM05D005935 ORTHO05D007012 2.2e-60 236.1 198 82.3
Gohir.A08G206600 Gossypium hirsutum HOM05D005935 ORTHO05D007012 2.2e-60 236.1 196 82.1
Gohir.D08G223300 Gossypium hirsutum HOM05D005935 ORTHO05D007012 2.2e-60 236.1 196 82.1
Gorai.004G237200 Gossypium raimondii HOM05D005935 ORTHO05D007012 2.2e-60 236.1 196 82.1
Phvul.001G225500 Phaseolus vulgaris HOM05D005935 ORTHO05D007012 2.8e-60 235.7 197 80.7
TWI36G1229 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 2.8e-60 235.7 199 82.9
Thecc.05G321000 Theobroma cacao HOM05D005935 ORTHO05D007012 3.7e-60 235.3 198 81.8
Sc09g0002670 Simmondsia chinensis HOM05D005935 ORTHO05D007012 4.8e-60 235.0 198 82.3
Glyma.03G231900 Glycine max HOM05D005935 ORTHO05D007012 6.3e-60 234.6 196 83.7
Nitab4.5_0000155g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 6.3e-60 234.6 185 77.8
PGR031G1309 Punica granatum HOM05D005935 ORTHO05D007012 6.3e-60 234.6 195 77.4
arahy.Tifrunner.gnm1.ann1.G5WI6L Arachis hypogaea HOM05D005935 ORTHO05D007012 8.2e-60 234.2 197 82.7
arahy.Tifrunner.gnm1.ann1.H1X696 Arachis hypogaea HOM05D005935 ORTHO05D007012 8.2e-60 234.2 197 82.7
Glyma.19G228900 Glycine max HOM05D005935 ORTHO05D007012 1.1e-59 233.8 196 80.1
MD12G1207200 Malus domestica HOM05D005935 ORTHO05D007012 1.1e-59 233.8 198 75.8
Hma1.2p1_0008F-1.1_g005750 Hydrangea macrophylla HOM05D005935 ORTHO05D007012 1.4e-59 233.4 197 80.2
THA.LOC104802776 Tarenaya hassleriana HOM05D005935 ORTHO05D007012 1.4e-59 233.4 196 80.6
arahy.Tifrunner.gnm1.ann1.7UDZ1N Arachis hypogaea HOM05D005935 ORTHO05D007012 1.8e-59 233.0 197 79.7
ECA234G4853 Erigeron canadensis HOM05D005935 ORTHO05D007012 1.8e-59 233.0 198 81.8
TAR636G0846 Trochodendron aralioides HOM05D005935 ORTHO05D007012 1.8e-59 233.0 197 77.7
Dinv24425 Davidia involucrata HOM05D005935 ORTHO05D007012 2.4e-59 232.6 198 73.2
Eucgr.H03282 Eucalyptus grandis HOM05D005935 ORTHO05D007012 2.4e-59 232.6 198 73.2
QL01p019294 Quercus lobata HOM05D005935 ORTHO05D007012 3.1e-59 232.3 195 83.6
QL03p018299 Quercus lobata HOM05D005935 ORTHO05D007012 3.1e-59 232.3 195 83.1
Nn3g21642 Nelumbo nucifera HOM05D005935 ORTHO05D007012 4.1e-59 231.9 194 74.2
Os03g0831900 Oryza sativa ssp. japonica HOM05D005935 ORTHO05D007012 4.1e-59 231.9 198 74.7
unitig_21.g20172 Utricularia gibba HOM05D005935 ORTHO05D007012 4.1e-59 231.9 197 74.1
arahy.Tifrunner.gnm1.ann1.I9BDFC Arachis hypogaea HOM05D005935 ORTHO05D007012 5.3e-59 231.5 197 80.2
Cc02_g34830 Coffea canephora HOM05D005935 ORTHO05D007012 7.0e-59 231.1 197 74.1
Migut.N01391 Erythranthe guttata HOM05D005935 ORTHO05D007012 9.1e-59 230.7 197 75.6
HanXRQChr10g0299201 Helianthus annuus HOM05D005935 ORTHO05D007012 2.0e-58 229.6 197 80.2
Aqoxy2G00839 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 2.6e-58 229.2 198 73.7
AT3G05760 Arabidopsis thaliana HOM05D005935 ORTHO05D007012 2.6e-58 229.2 195 79.5
Actinidia16851 Actinidia chinensis HOM05D005935 ORTHO05D007012 3.5e-58 228.8 197 81.7
BolC5t34806H Brassica oleracea HOM05D002110 ORTHO05D007012 3.5e-58 228.8 195 71.8
BraA05t22944Z Brassica rapa HOM05D002110 ORTHO05D007012 3.5e-58 228.8 195 73.3
Ciclev10002528m.g Citrus clementina HOM05D005935 ORTHO05D007012 4.5e-58 228.4 198 81.8
Medtr7g112060 Medicago truncatula HOM05D005935 ORTHO05D007012 5.9e-58 228.0 197 79.7
Sp3g04650 Schrenkiella parvula HOM05D005935 ORTHO05D007012 5.9e-58 228.0 197 75.6
CiPaw.07G028100 Carya illinoinensis HOM05D005935 ORTHO05D007012 7.7e-58 227.6 196 73.0
TWI56G1463 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 7.7e-58 227.6 199 81.4
Haze_04079 Corylus avellana HOM05D005935 ORTHO05D007012 1.0e-57 227.3 197 72.1
BcaC05g30089 Brassica carinata HOM05D005935 ORTHO05D007012 1.3e-57 226.9 195 71.8
AL3G16500 Arabidopsis lyrata HOM05D005935 ORTHO05D007012 1.7e-57 226.5 195 79.0
Manes.09G175700 Manihot esculenta HOM05D005935 ORTHO05D007012 2.2e-57 226.1 199 74.4
Zm00001eb121760 Zea mays HOM05D005935 ORTHO05D007012 2.2e-57 226.1 197 70.6
Ca_09298_v3 Cicer arietinum L. HOM05D005935 ORTHO05D007012 2.9e-57 225.7 196 77.6
TAR362G1094 Trochodendron aralioides HOM05D005935 ORTHO05D007012 6.5e-57 224.6 199 72.9
VMungo1383G1193 Vigna mungo HOM05D005935 ORTHO05D007012 6.5e-57 224.6 192 79.2
Atru.chr2.148 Acer truncatum HOM05D005935 ORTHO05D007012 1.1e-56 223.8 198 72.2
Aqoxy4G02482 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 1.5e-56 223.4 198 72.2
BcaC05g29782 Brassica carinata HOM05D005935 ORTHO05D007012 1.9e-56 223.0 195 76.9
Peaxi162Scf00673g00126 Petunia axillaris HOM05D005935 ORTHO05D007012 2.5e-56 222.6 196 73.5
RcHm_v2.0_Chr3g0456881 Rosa chinensis HOM05D005935 ORTHO05D007012 2.5e-56 222.6 198 73.7
C05p61480 Brassica napus HOM05D002110 ORTHO05D007012 1.2e-55 220.3 196 72.4
Solyc01g100330.3 Solanum lycopersicum HOM05D005935 ORTHO05D007012 1.6e-55 219.9 196 72.4
Sopen01g043840 Solanum pennellii HOM05D005935 ORTHO05D007012 1.6e-55 219.9 196 72.4
FvH4_6g07240 Fragaria vesca HOM05D005935 ORTHO05D007012 3.6e-55 218.8 198 71.7
Psat3g013040 Pisum sativum HOM05D005935 ORTHO05D007012 3.6e-55 218.8 191 80.1
PGSC0003DMG400002806 Solanum tuberosum HOM05D005935 ORTHO05D007012 3.6e-55 218.8 196 71.9
CAN.G1715.16 Capsicum annuum HOM05D005935 ORTHO05D007012 6.1e-55 218.0 196 71.9
FAN05G5324 Fragaria x ananassa HOM05D005935 ORTHO05D007012 2.3e-54 216.1 206 68.9
ATR0767G209 Amborella trichopoda HOM05D005935 ORTHO05D007012 3.0e-54 215.7 198 72.2
FAN14G3557 Fragaria x ananassa HOM05D005935 ORTHO05D007012 3.0e-54 215.7 206 68.9
Potri.013G010300 Populus trichocarpa HOM05D005935 ORTHO05D007012 4.0e-54 215.3 194 79.9
SEGI_34613 Sequoiadendron giganteum HOM05D005935 ORTHO05D007012 5.2e-54 214.9 199 67.3
CARHR080230 Cardamine hirsuta HOM05D005935 ORTHO05D007012 6.8e-54 214.5 196 71.4
FAN02G1619 Fragaria x ananassa HOM05D005935 ORTHO05D007012 6.8e-54 214.5 206 68.4
PSO170G3047 Papaver somniferum HOM05D005935 ORTHO05D007012 6.8e-54 214.5 197 75.6
PSO357G0321 Papaver somniferum HOM05D005935 ORTHO05D007012 6.8e-54 214.5 197 75.6
vmacro01555 Vaccinium macrocarpon HOM05D005935 ORTHO05D007012 2.0e-53 213.0 241 59.3
CDE05G0147 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 9.8e-53 210.7 199 70.9
Nitab4.5_0013342g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004269 9.8e-53 210.7 198 69.7
CDE11G0767 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 2.2e-52 209.5 199 70.4
Duzib128G1094 Durio zibethinus HOM05D005935 ORTHO05D007012 2.8e-52 209.1 149 82.6
Mapoly0111s0002 Marchantia polymorpha HOM05D005935 ORTHO05D007012 4.8e-52 208.4 197 68.5
PSO478G5244 Papaver somniferum HOM05D005935 ORTHO05D007012 1.4e-51 206.8 197 74.1
DCAR_005416 Daucus carota HOM05D005935 ORTHO05D007012 7.0e-51 204.5 159 81.1
Pp3c4_20180 Physcomitrium patens HOM05D005935 ORTHO05D007012 1.2e-50 203.8 202 69.8
Aa31LG5G16170 Aethionema arabicum HOM05D005935 ORTHO05D007012 1.6e-50 203.4 206 55.8
HPP92_015241 Vanilla planifolia HOM05D005935 ORTHO05D007012 1.7e-49 199.9 196 72.4
Thhalv10022198m.g Eutrema salsugineum HOM05D005935 ORTHO05D007012 2.9e-49 199.1 266 53.8
Hund07136 Selenicereus undatus HOM05D005935 ORTHO05D007012 2.9e-49 199.1 297 55.2
Hund21747 Selenicereus undatus HOM05D005935 ORTHO05D007012 3.8e-49 198.7 186 71.5
CSS0047945 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.9e-48 196.4 159 76.7
TPR.G1633 Trifolium pratense HOM05D005935 ORTHO05D007012 5.5e-48 194.9 196 64.3
Rhsim11G0094200 Rhododendron simsii HOM05D005935 ORTHO05D007012 6.1e-47 191.4 187 57.8
FAN09G4449 Fragaria x ananassa HOM05D005935 ORTHO05D007012 2.3e-46 189.5 147 69.4
Nitab4.5_0000368g0260 Nicotiana tabacum HOM05D005935 ORTHO05D007012 2.3e-46 189.5 184 60.9
CSS0009551 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.4e-43 180.3 183 66.7
AagrBONN_evm.TU.Sc2ySwM_344.1201 Anthoceros agrestis HOM05D005935 ORTHO05D007012 9.1e-43 177.6 149 61.7
SMO201G0167 Selaginella moellendorffii HOM05D005935 ORTHO05D007012 8.6e-41 171.0 205 57.1
AagrBONN_evm.TU.Sc2ySwM_228.1845 Anthoceros agrestis HOM05D005935 ORTHO05D007012 1.1e-40 170.6 146 60.3
CSS0024691 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.2e-39 167.2 144 63.9
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 2.1e-39 166.4 142 62.7
Oeu013219.2 Olea europaea HOM05D005935 ORTHO05D007012 6.1e-39 164.9 216 65.3
Lj5A336T44 Lonicera japonica HOM05D005935 ORTHO05D007012 1.4e-38 163.7 105 77.1
Nitab4.5_0007747g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 2.0e-37 159.8 123 84.6
CSS0031844 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 7.8e-34 147.9 121 66.1
Pp3c12_7700 Physcomitrium patens HOM05D005935 ORTHO05D007012 6.6e-33 144.8 105 69.5
Sabra13G0008800 Salix brachista HOM05D005935 ORTHO05D007012 2.3e-30 136.3 218 48.2
CSS0034550 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 4.9e-28 128.6 196 54.6
RcHm_v2.0_Chr7g0179971 Rosa chinensis HOM05D005935 ORTHO05D007012 9.2e-27 124.4 129 52.7
Cre07.g341650 Chlamydomonas reinhardtii HOM05D005935 ORTHO05D007012 2.7e-26 122.9 228 46.1
CBR_g38440 Chara braunii HOM05D005935 ORTHO05D007012 1.5e-24 117.1 205 42.9
Actinidia35528 Actinidia chinensis HOM05D005935 ORTHO05D007012 4.7e-23 112.1 278 46.8
MCO03G264 Micromonas commoda HOM05D005935 ORTHO05D007012 1.2e-18 97.4 211 42.7
Zm00001eb307900 Zea mays HOM05D005935 ORTHO05D007012 6.6e-17 91.7 96 72.9
Zm00001eb114570 Zea mays HOM05D005935 ORTHO05D007012 4.7e-15 85.5 91 73.6
FAN04G2955 Fragaria x ananassa HOM05D005935 ORTHO05D007012 2.3e-14 83.2 147 37.4
PRCOL_00000245 Prasinoderma coloniale HOM05D005935 ORTHO05D007012 4.9e-12 75.5 203 37.4
Zm00001eb180860 Zea mays HOM05D005935 ORTHO05D007012 1.6e-10 70.5 46 73.9
Cfa024511 Carpinus fangiana HOM05D005935 ORTHO05D007012 8.1e-07 58.2 160 26.2


User provided reference genes

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