Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62003312 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 2602.8 1275 100.0
AUR62016271 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 2566.2 1275 98.4
EL10Ac6g14746 Beta vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 2248.8 1355 81.7
Hund19660 Selenicereus undatus HOM05D004874 ORTHO05D006796 0.0e+00 2007.6 1222 80.6
Gorai.011G111800 Gossypium raimondii HOM05D004874 ORTHO05D006796 0.0e+00 1768.8 1277 67.0
Thecc.01G111200 Theobroma cacao HOM05D004874 ORTHO05D006796 0.0e+00 1765.4 1277 67.0
Dinv19497 Davidia involucrata HOM05D004874 ORTHO05D006796 0.0e+00 1763.0 1277 67.3
Gohir.A10G086600 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1757.7 1277 66.7
Gohir.D10G102100 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1756.9 1277 66.7
Ciclev10024728m.g Citrus clementina HOM05D004874 ORTHO05D006796 0.0e+00 1755.3 1271 66.1
Atru.chr4.387 Acer truncatum HOM05D004874 ORTHO05D006796 0.0e+00 1755.0 1273 66.8
Rhsim10G0151300 Rhododendron simsii HOM05D004874 ORTHO05D006796 0.0e+00 1747.3 1275 65.9
Actinidia15577 Actinidia chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1746.5 1272 66.0
CSS0018271 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1744.9 1279 65.9
CANSAT01G0647 Cannabis sativa HOM05D004874 ORTHO05D006796 0.0e+00 1739.5 1276 65.5
GSVIVG01022217001 Vitis vinifera HOM05D004874 ORTHO05D006796 0.0e+00 1737.2 1275 66.0
QL06p032401 Quercus lobata HOM05D004874 ORTHO05D006796 0.0e+00 1719.5 1273 65.5
CSS0002284 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1719.1 1291 64.8
Potri.005G083800 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1719.1 1273 65.2
Sabra05G0068900 Salix brachista HOM05D004874 ORTHO05D006796 0.0e+00 1717.6 1280 65.3
Manes.13G077640 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1715.3 1277 65.5
TWI74G1507 Tripterygium wilfordii HOM05D004874 ORTHO05D006796 0.0e+00 1705.3 1276 64.8
Phvul.009G140100 Phaseolus vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1704.9 1273 63.9
Glyma.04G220000 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1695.6 1272 63.7
VMungo1309G2704 Vigna mungo HOM05D004874 ORTHO05D006796 0.0e+00 1692.2 1274 63.3
MD15G1333600 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1686.8 1276 64.7
Glyma.06G145900 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1686.0 1272 63.2
RcHm_v2.0_Chr2g0116231 Rosa chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1684.8 1271 64.4
Nn5g28922 Nelumbo nucifera HOM05D004874 ORTHO05D006796 0.0e+00 1682.5 1274 65.4
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1682.2 1278 63.9
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 0.0e+00 1672.1 1240 66.6
Prupe.6G174100 Prunus persica HOM05D004874 ORTHO05D006796 0.0e+00 1672.1 1271 64.4
PSO675G8458 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1671.8 1273 64.7
FvH4_1g22150 Fragaria vesca HOM05D004874 ORTHO05D006796 0.0e+00 1667.5 1274 64.1
PSO541G0735 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1666.0 1273 64.7
Lj1g0000337 Lotus japonicus HOM05D004874 ORTHO05D006796 0.0e+00 1665.2 1270 63.0
TPR.G23744 Trifolium pratense HOM05D004874 ORTHO05D006796 0.0e+00 1664.8 1275 61.9
arahy.Tifrunner.gnm1.ann1.M2IALY Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1664.0 1275 62.9
arahy.Tifrunner.gnm1.ann1.ZQBN5H Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1663.7 1275 62.9
Psat5g065960 Pisum sativum HOM05D004874 ORTHO05D006796 0.0e+00 1659.8 1275 61.5
Medtr3g094770 Medicago truncatula HOM05D004874 ORTHO05D006796 0.0e+00 1659.4 1276 62.2
FAN23G3027 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1657.1 1274 63.9
Ca_16889_v3 Cicer arietinum L. HOM05D004874 ORTHO05D006796 0.0e+00 1654.0 1275 62.1
FAN28G2703 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1652.1 1274 63.8
FAN26G2351 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1650.2 1274 63.8
FAN19G0866 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1642.1 1300 62.8
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 0.0e+00 1638.6 1274 63.3
Peaxi162Scf00323g00112 Petunia axillaris HOM05D004874 ORTHO05D006796 0.0e+00 1635.5 1245 63.1
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 0.0e+00 1632.1 1277 63.1
Aqoxy6G00493 Aquilegia oxysepala HOM05D004874 ORTHO05D006796 0.0e+00 1630.9 1288 62.3
ECA238G3208 Erigeron canadensis HOM05D004874 ORTHO05D006796 0.0e+00 1629.8 1276 61.8
THA.LOC104804146 Tarenaya hassleriana HOM05D004874 ORTHO05D006796 0.0e+00 1628.6 1274 62.0
CAN.G1728.1 Capsicum annuum HOM05D004874 ORTHO05D006796 0.0e+00 1623.6 1276 61.6
Lalb_Chr11g0068041 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1622.4 1276 61.1
Sed0015455 Sechium edule HOM05D004874 ORTHO05D006796 0.0e+00 1622.4 1272 62.7
Cc07_g16070 Coffea canephora HOM05D004874 ORTHO05D006796 0.0e+00 1621.7 1276 62.5
HanXRQChr14g0446191 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1621.3 1276 61.8
Eucgr.H04838 Eucalyptus grandis HOM05D004874 ORTHO05D006796 0.0e+00 1619.4 1273 62.1
HanXRQChr10g0295251 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1615.9 1274 61.9
Sopen04g023580 Solanum pennellii HOM05D004874 ORTHO05D006796 0.0e+00 1615.9 1281 61.5
Solyc04g054140.4 Solanum lycopersicum HOM05D004874 ORTHO05D006796 0.0e+00 1605.1 1286 61.1
Oeu028379.4 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1602.4 1375 57.6
Lsat_1_v5_gn_2_65401 Lactuca sativa HOM05D004874 ORTHO05D006796 0.0e+00 1601.6 1280 61.7
Manes.12G141800 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1600.9 1273 61.4
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 0.0e+00 1580.5 1276 60.5
AL4G11330 Arabidopsis lyrata HOM05D004874 ORTHO05D006796 0.0e+00 1568.5 1277 60.4
Migut.H02425 Erythranthe guttata HOM05D004874 ORTHO05D006796 0.0e+00 1568.1 1279 59.9
AT2G22010 Arabidopsis thaliana HOM05D004874 ORTHO05D006796 0.0e+00 1563.5 1280 60.1
Ah.02g124400 Amaranthus hybridus HOM05D004874 ORTHO05D006796 0.0e+00 1560.4 875 85.1
CARHR113090 Cardamine hirsuta HOM05D004874 ORTHO05D006796 0.0e+00 1555.0 1277 59.8
BcaB08g35028 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1552.7 1279 60.0
Lalb_Chr13g0296191 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1545.8 1276 59.1
Sp4g01070 Schrenkiella parvula HOM05D004874 ORTHO05D006796 0.0e+00 1545.8 1276 59.7
A09p57840 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1545.4 1281 60.0
C08p41080 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1543.1 1283 59.5
BcaC07g41106 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1542.7 1280 59.8
BolC8t51674H Brassica oleracea HOM05D004874 ORTHO05D006796 0.0e+00 1537.3 1289 59.3
ATR0564G436 Amborella trichopoda HOM05D004874 ORTHO05D006796 0.0e+00 1536.5 1273 59.3
BraA09t41177Z Brassica rapa HOM05D004874 ORTHO05D006796 0.0e+00 1534.2 1287 59.7
PGR102G1404 Punica granatum HOM05D004874 ORTHO05D006796 0.0e+00 1531.2 1273 59.2
Thhalv10000015m.g Eutrema salsugineum HOM05D004874 ORTHO05D006796 0.0e+00 1525.8 1274 59.2
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 0.0e+00 1515.4 1279 59.6
TAR628G0415 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1505.0 1188 63.0
SGA_v2.0_scaffold2G01299 Striga asiatica HOM05D004874 ORTHO05D006796 0.0e+00 1496.5 1359 55.8
Aa31LG7G14640 Aethionema arabicum HOM05D004874 ORTHO05D006796 0.0e+00 1480.3 1278 58.2
SalBow6G4347 Salvia bowleyana HOM05D004874 ORTHO05D006796 0.0e+00 1470.3 1179 60.7
TAR376G0110 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1468.0 1039 69.0
DCAR_014257 Daucus carota HOM05D004874 ORTHO05D006796 0.0e+00 1458.0 1276 56.3
Zm00001eb328050 Zea mays HOM05D004874 ORTHO05D006796 0.0e+00 1420.2 1268 55.9
Nitab4.5_0000156g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 0.0e+00 1402.9 1042 64.9
MD01G1017400 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1361.7 1035 64.8
CDE07G0820 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1361.3 1278 54.0
PGSC0003DMG400012951 Solanum tuberosum HOM05D004874 ORTHO05D006796 0.0e+00 1345.1 1052 62.2
SEGI_33214 Sequoiadendron giganteum HOM05D004874 ORTHO05D006796 0.0e+00 1328.5 1275 53.3
Duzib147G0760 Durio zibethinus HOM05D004874 ORTHO05D006796 0.0e+00 1269.6 1277 52.3
COL.COLO4_11028 Corchorus olitorius HOM05D004874 ORTHO05D006796 0.0e+00 1226.5 1276 51.7
unitig_899.g14600 Utricularia gibba HOM05D004874 ORTHO05D006796 0.0e+00 1205.3 1185 51.6
CDE04G1796 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1196.8 1227 50.5
Lj2C562G3 Lonicera japonica HOM05D004874 ORTHO05D006796 0.0e+00 1152.9 831 66.1
MBI02_g13022_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 0.0e+00 1125.9 831 65.6
Cpa.g.sc196.7 Carica papaya HOM05D004874 ORTHO05D006796 0.0e+00 1119.8 833 65.3
FAN01G2715 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1093.6 941 59.9
vmacro12908 Vaccinium macrocarpon HOM05D004874 ORTHO05D006796 0.0e+00 1080.1 776 65.1
CiPaw.04G092800 Carya illinoinensis HOM05D004874 ORTHO05D006796 3.8e-310 1068.5 807 66.5
Mapoly0047s0138 Marchantia polymorpha HOM05D004874 ORTHO05D006796 8.3e-305 1050.8 1329 45.5
SMO143G0116 Selaginella moellendorffii HOM05D004874 ORTHO05D006796 2.4e-304 1049.3 1203 47.5
Pp3c1_33900 Physcomitrium patens HOM05D004874 ORTHO05D006796 1.5e-301 1040.0 1298 45.4
FAN06G3019 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.4e-299 1033.5 942 57.7
Pp3c2_2760 Physcomitrium patens HOM05D004874 ORTHO05D006796 3.2e-296 1022.3 1328 44.7
Pp3c17_14550 Physcomitrium patens HOM05D004874 ORTHO05D006796 1.7e-294 1016.5 1332 44.4
FAN06G4447 Fragaria x ananassa HOM05D004874 ORTHO05D006796 4.5e-282 975.3 942 55.4
Oeu030684.1 Olea europaea HOM05D004874 ORTHO05D006796 3.0e-278 962.6 762 60.5
AagrBONN_evm.TU.Sc2ySwM_228.911 Anthoceros agrestis HOM05D004874 ORTHO05D006796 4.3e-277 958.7 1142 47.1
FAN10G0201 Fragaria x ananassa HOM05D004874 ORTHO05D006796 7.4e-261 904.8 692 64.5
MSTRG.2539 Avicennia marina HOM05D004874 ORTHO05D006796 8.2e-260 901.4 762 58.8
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 6.6e-209 732.3 1467 34.4
FvH4_7g04730 Fragaria vesca HOM05D004874 ORTHO05D006796 6.6e-209 732.3 553 64.6
HPP92_016847 Vanilla planifolia HOM05D004874 ORTHO05D006796 2.3e-206 723.8 618 55.5
HPP92_016848 Vanilla planifolia HOM05D004874 ORTHO05D006796 7.0e-203 712.2 622 58.7
Oeu030685.1 Olea europaea HOM05D004874 ORTHO05D006796 2.0e-189 667.5 500 61.8
FAN03G2613 Fragaria x ananassa HOM05D004874 ORTHO05D006796 3.8e-180 636.7 502 63.5
Ah.02g124390 Amaranthus hybridus HOM05D004874 ORTHO05D006796 1.4e-163 581.6 338 86.1
Lj2A562T49 Lonicera japonica HOM05D004874 ORTHO05D006796 6.5e-156 556.2 475 59.2
MBI02_g44126_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 1.3e-127 462.2 361 63.2
Cpa.g.sc196.6 Carica papaya HOM05D004874 ORTHO05D006796 7.2e-123 446.4 322 66.8
Cc07_g14920 Coffea canephora HOM05D004874 ORTHO05D006796 1.6e-122 445.3 389 57.1
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 1.1e-86 326.2 1372 26.0
Os07g0626900 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 3.7e-79 301.2 258 56.6
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 4.9e-79 300.8 1231 25.1
Sabra07G0068700 Salix brachista HOM05D004874 ORTHO05D006796 3.2e-46 191.8 236 46.2
Nitab4.5_0010573g0010 Nicotiana tabacum HOM05D004874 ORTHO05D006796 6.9e-41 174.1 149 53.7
FvH4_7g04731 Fragaria vesca HOM05D004874 ORTHO05D006796 1.8e-36 159.5 132 57.6
Solyc05g055570.3 Solanum lycopersicum HOM05D004874 ORTHO05D014502 3.1e-25 122.1 112 56.2
Zm00001eb137300 Zea mays HOM05D004874 ORTHO05D006796 5.9e-16 91.3 93 52.7
Nitab4.5_0000904g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 3.9e-12 78.6 46 78.3
Cre03.g188750 Chlamydomonas reinhardtii HOM05D000032 ORTHO05D028824 1.5e-11 76.6 142 33.8
MCO11G679 Micromonas commoda HOM05D000032 ORTHO05D028824 2.8e-10 72.4 194 30.9
HanXRQChr11g0324541 Helianthus annuus HOM05D004874 ORTHO05D006796 3.7e-10 72.0 48 66.7
HanXRQChr11g0341101 Helianthus annuus HOM05D004874 ORTHO05D006796 1.1e-09 70.5 48 66.7
Os03g0428000 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 2.4e-09 69.3 83 47.0
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 2.4e-09 69.3 95 36.8
BcaC09g48952 Brassica carinata HOM05D004874 ORTHO05D014502 1.0e-07 63.9 53 56.6
BcaC06g36156 Brassica carinata HOM05D004874 ORTHO05D014502 2.2e-07 62.8 53 54.7
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 2.9e-07 62.4 95 36.8
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 1.1e-06 60.5 185 30.3
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 2.5e-06 59.3 179 29.6
BcaC04g21885 Brassica carinata HOM05D004874 ORTHO05D014502 2.5e-06 59.3 56 50.0
Cre09.g387801 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 3.2e-06 58.9 97 35.1
C07p07140 Brassica napus HOM05D004874 ORTHO05D014502 7.2e-06 57.8 47 55.3
C09p26200 Brassica napus HOM05D004874 ORTHO05D014502 7.2e-06 57.8 47 57.4
BolC9t55523H Brassica oleracea HOM05D004874 ORTHO05D014502 7.2e-06 57.8 47 57.4


User provided reference genes

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