Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62001346 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1906.0 947 100.0
AUR62025658 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1867.0 947 97.9
EL10Ac7g18165 Beta vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1778.5 947 92.4
Ah.15g094340 Amaranthus hybridus HOM05D005707 ORTHO05D007276 0.0e+00 1753.8 947 91.1
Hund18608 Selenicereus undatus HOM05D005707 ORTHO05D007276 0.0e+00 1679.8 961 86.0
Cfa007084 Carpinus fangiana HOM05D005707 ORTHO05D007276 0.0e+00 1555.8 946 82.2
Haze_03608 Corylus avellana HOM05D005707 ORTHO05D007276 0.0e+00 1552.0 946 81.7
Gorai.007G166700 Gossypium raimondii HOM05D005707 ORTHO05D007276 0.0e+00 1550.0 966 80.2
Gohir.D11G156360 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1549.3 966 80.1
Dinv07863 Davidia involucrata HOM05D005707 ORTHO05D007276 0.0e+00 1546.2 957 80.3
Gohir.A11G149550 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1544.3 966 79.9
Manes.12G065301 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1542.7 953 81.2
Manes.13G062700 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1542.3 965 80.1
MD17G1113900 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1541.6 947 81.2
Potri.014G165400 Populus trichocarpa HOM05D005707 ORTHO05D007276 0.0e+00 1538.9 968 79.4
Prupe.3G200600 Prunus persica HOM05D005707 ORTHO05D007276 0.0e+00 1538.5 953 80.4
PGR142G3494 Punica granatum HOM05D005707 ORTHO05D007276 0.0e+00 1536.2 953 79.7
MD09G1123500 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1535.4 947 81.2
Sabra14G0126000 Salix brachista HOM05D005707 ORTHO05D007276 0.0e+00 1533.9 959 79.7
TAR626G1120 Trochodendron aralioides HOM05D005707 ORTHO05D007276 0.0e+00 1531.9 956 78.8
Duzib138G1526 Durio zibethinus HOM05D005707 ORTHO05D007276 0.0e+00 1525.4 963 79.6
Ciclev10018207m.g Citrus clementina HOM05D005707 ORTHO05D007276 0.0e+00 1519.6 957 79.2
Rhsim06G0174400 Rhododendron simsii HOM05D005707 ORTHO05D007276 0.0e+00 1519.2 967 78.4
Eucgr.A01050 Eucalyptus grandis HOM05D005707 ORTHO05D007276 0.0e+00 1518.8 942 79.7
CiPaw.07G002400 Carya illinoinensis HOM05D005707 ORTHO05D007276 0.0e+00 1518.4 957 79.5
GSVIVG01030049001 Vitis vinifera HOM05D005707 ORTHO05D007276 0.0e+00 1518.4 952 79.7
Actinidia09778 Actinidia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1518.1 949 79.3
Hma1.2p1_1267F.1_g271460 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1513.8 945 79.3
Nn1g03422 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1513.8 957 78.3
Atru.BG.42.p Acer truncatum HOM05D005707 ORTHO05D007276 0.0e+00 1511.9 940 79.8
CSS0003308 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1511.1 963 78.9
CSS0049316 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1511.1 963 78.9
MBI16_g36319_MAGBIO Magnolia biondii HOM05D005707 ORTHO05D007276 0.0e+00 1511.1 962 78.0
RcHm_v2.0_Chr2g0156491 Rosa chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1510.7 953 79.6
ECA240G2058 Erigeron canadensis HOM05D005707 ORTHO05D007276 0.0e+00 1507.7 936 79.7
CANSAT64G1567 Cannabis sativa HOM05D005707 ORTHO05D007276 0.0e+00 1504.2 957 78.4
FvH4_6g40910 Fragaria vesca HOM05D005707 ORTHO05D007276 0.0e+00 1502.6 953 79.4
HanXRQChr03g0075251 Helianthus annuus HOM05D005707 ORTHO05D007276 0.0e+00 1502.6 950 79.1
FAN14G2372 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1501.5 953 79.3
TWI75G1501 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1499.2 951 78.7
FAN05G2777 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1498.4 953 79.2
arahy.Tifrunner.gnm1.ann1.T3MKLR Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1496.5 968 78.2
TWI18G1214 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1493.8 955 77.9
ClCG02G009340 Citrullus lanatus HOM05D005707 ORTHO05D007276 0.0e+00 1493.0 944 78.7
Lj8A134G73 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1492.6 942 79.1
FAN09G4573 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1492.2 953 78.7
MELO3C025972.2 Cucumis melo HOM05D005707 ORTHO05D007276 0.0e+00 1491.9 964 77.4
Nn1g03246 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1491.9 956 77.0
CsaV3_6G009510 Cucumis sativus L. HOM05D005707 ORTHO05D007276 0.0e+00 1491.1 966 77.4
MSTRG.14925 Avicennia marina HOM05D005707 ORTHO05D007276 0.0e+00 1487.6 964 77.1
FAN02G0692 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1487.6 953 78.6
Lj1g0027558 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1487.2 972 77.9
Lj1C792T2 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1484.5 962 76.8
Ca_27368_v3 Cicer arietinum L. HOM05D005707 ORTHO05D007276 0.0e+00 1484.2 976 77.3
QL06p053011 Quercus lobata HOM05D005707 ORTHO05D007276 0.0e+00 1483.8 951 78.5
Glyma.07G119500 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1481.8 969 77.3
Aqoxy2G03044 Aquilegia oxysepala HOM05D005707 ORTHO05D007276 0.0e+00 1480.3 957 76.2
Lsat_1_v5_gn_0_5460 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1479.9 942 78.3
Nitab4.5_0001082g0050 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1479.9 957 77.0
CAN.G308.64 Capsicum annuum HOM05D005707 ORTHO05D007276 0.0e+00 1478.4 956 76.8
Phvul.010G042100 Phaseolus vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1477.2 963 77.7
arahy.Tifrunner.gnm1.ann1.DQM4AF Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1476.5 1002 75.6
Oeu040469.1 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1476.1 963 77.3
Glyma.03G104400 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1474.1 959 77.3
Sopen06g023670 Solanum pennellii HOM05D005707 ORTHO05D007276 0.0e+00 1474.1 958 76.6
Lj6g0020016 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1473.0 962 77.5
Sed0013138 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1471.4 939 77.8
PGSC0003DMG400026068 Solanum tuberosum HOM05D005707 ORTHO05D007276 0.0e+00 1470.7 956 76.3
Lsat_1_v5_gn_9_90020 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1470.3 954 77.3
Solyc06g065170.4 Solanum lycopersicum HOM05D005707 ORTHO05D007276 0.0e+00 1469.9 958 76.2
VMungo0331G1616 Vigna mungo HOM05D005707 ORTHO05D007276 0.0e+00 1466.8 963 77.1
Migut.M00030 Erythranthe guttata HOM05D005707 ORTHO05D007276 0.0e+00 1465.3 959 76.5
Cc07_g12010 Coffea canephora HOM05D005707 ORTHO05D007276 0.0e+00 1463.7 952 76.9
Nitab4.5_0000303g0290 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1462.2 957 76.4
PSO732G0538 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1460.3 948 76.1
Peaxi162Scf00268g00614 Petunia axillaris HOM05D005707 ORTHO05D007276 0.0e+00 1459.9 944 77.5
vmacro12103 Vaccinium macrocarpon HOM05D005707 ORTHO05D007276 0.0e+00 1459.1 966 75.8
PSO675G5925 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1457.2 949 76.1
TPR.G3804 Trifolium pratense HOM05D005707 ORTHO05D007276 0.0e+00 1454.5 971 75.8
THA.LOC104808851 Tarenaya hassleriana HOM05D005707 ORTHO05D007276 0.0e+00 1452.6 954 76.3
Sed0020801 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1448.7 959 75.4
Lalb_Chr19g0124221 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1447.2 966 76.0
DCAR_012906 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1446.0 941 75.3
Sp3g23690 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1446.0 939 77.3
SpUn0142_0010 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1446.0 939 77.3
A07p06540 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1443.7 940 76.3
Thhalv10002393m.g Eutrema salsugineum HOM05D005707 ORTHO05D007276 0.0e+00 1443.7 939 77.0
AL3G42770 Arabidopsis lyrata HOM05D005707 ORTHO05D007276 0.0e+00 1440.6 937 76.0
BcaC06g35905 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1439.9 940 76.1
BolC7t41423H Brassica oleracea HOM05D005707 ORTHO05D007276 0.0e+00 1439.9 940 76.1
BraA07t28449Z Brassica rapa HOM05D005707 ORTHO05D007276 0.0e+00 1439.1 940 76.1
Medtr1g019500 Medicago truncatula HOM05D005707 ORTHO05D007276 0.0e+00 1437.9 976 75.0
Carub.0003s2668 Capsella rubella HOM05D005707 ORTHO05D007276 0.0e+00 1436.8 937 75.8
C07p09820 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1433.7 940 75.7
AT2G05170 Arabidopsis thaliana HOM05D005707 ORTHO05D007276 0.0e+00 1428.3 940 75.6
BcaB06g26833 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1427.2 936 75.6
CARHR103040 Cardamine hirsuta HOM05D005707 ORTHO05D007276 0.0e+00 1422.9 940 75.5
Aa31LG9G17700 Aethionema arabicum HOM05D005707 ORTHO05D007276 0.0e+00 1410.6 952 74.2
ATR0626G192 Amborella trichopoda HOM05D005707 ORTHO05D007276 0.0e+00 1409.0 944 74.0
COL.COLO4_09234 Corchorus olitorius HOM05D005707 ORTHO05D007276 0.0e+00 1408.7 963 74.9
SGA_v2.0_scaffold73G24514 Striga asiatica HOM05D005707 ORTHO05D007276 0.0e+00 1401.3 957 72.9
Os04g0382700 Oryza sativa ssp. japonica HOM05D005707 ORTHO05D007276 0.0e+00 1397.9 944 72.5
Zm00001eb420950 Zea mays HOM05D005707 ORTHO05D007276 0.0e+00 1388.2 953 71.2
Thecc.01G191800 Theobroma cacao HOM05D005707 ORTHO05D007276 0.0e+00 1350.1 836 81.3
unitig_37.g12597 Utricularia gibba HOM05D005707 ORTHO05D007276 0.0e+00 1345.1 941 71.5
SEGI_38374 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 0.0e+00 1298.9 956 67.2
DCAR_028089 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1292.7 855 76.1
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1280.4 940 70.2
Psat6g013160 Pisum sativum HOM05D005707 ORTHO05D007276 0.0e+00 1254.2 850 75.2
Sc15g0001000 Simmondsia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1240.3 706 85.6
Lalb_Chr01g0023301 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1176.4 736 78.7
AagrBONN_evm.TU.Sc2ySwM_344.1573 Anthoceros agrestis HOM05D005707 ORTHO05D007276 0.0e+00 1171.4 964 60.1
Cpa.g.sc211.13 Carica papaya HOM05D005707 ORTHO05D007276 0.0e+00 1156.0 954 64.3
Mapoly0022s0120 Marchantia polymorpha HOM05D005707 ORTHO05D007276 0.0e+00 1149.4 994 58.5
SMO329G0026 Selaginella moellendorffii HOM05D005707 ORTHO05D007276 0.0e+00 1099.3 944 59.6
Pp3c25_5560 Physcomitrium patens HOM05D005707 ORTHO05D007276 0.0e+00 1087.8 1009 55.2
Hma1.2p1_2056F.1_g312820 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 1.1e-301 1040.0 673 77.1
Hma1.2p1_1267F.1_g271470 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 1.0e-299 1033.5 633 80.4
CDE12G0215 Ceratophyllum demersum HOM05D005707 ORTHO05D007276 3.4e-271 938.7 710 65.4
CBR_g20017 Chara braunii HOM05D005707 ORTHO05D007276 3.1e-224 782.7 766 51.8
Lsat_1_v5_gn_9_104540 Lactuca sativa HOM05D005707 ORTHO05D007276 1.9e-208 730.3 461 77.7
HPP92_028369 Vanilla planifolia HOM05D005707 ORTHO05D007276 2.7e-175 620.2 439 70.2
HPP92_028368 Vanilla planifolia HOM05D005707 ORTHO05D007276 1.3e-124 451.8 305 69.8
PRCOL_00006472 Prasinoderma coloniale HOM05D005707 ORTHO05D007276 2.1e-111 407.9 641 38.8
Cre02.g095074 Chlamydomonas reinhardtii HOM05D005707 ORTHO05D007276 8.0e-111 406.0 1306 25.3
Lalb_Chr01g0023291 Lupinus albus HOM05D005707 ORTHO05D007276 1.6e-74 285.4 201 73.6
Nn6g32392 Nelumbo nucifera HOM05D005707 ORTHO05D007276 3.4e-69 267.7 205 71.2
HPP92_014038 Vanilla planifolia HOM05D005707 ORTHO05D007276 4.6e-58 230.7 177 66.7
SEGI_06176 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 6.7e-49 200.3 301 39.9
Nn6g32391 Nelumbo nucifera HOM05D005707 ORTHO05D007276 5.3e-46 190.7 116 77.6
Peaxi162Scf00585g00082 Petunia axillaris HOM05D000636 ORTHO05D002338 6.7e-41 173.7 114 71.9
HPP92_014037 Vanilla planifolia HOM05D005707 ORTHO05D048631 7.2e-35 153.7 142 57.0
HPP92_014036 Vanilla planifolia HOM05D005707 ORTHO05D007276 7.4e-32 143.7 90 66.7
Nn2g13354 Nelumbo nucifera HOM05D005707 ORTHO05D007276 2.5e-27 128.6 64 89.1
VMungo0331G0660 Vigna mungo HOM05D000100 ORTHO05D000052 8.2e-15 87.0 80 57.5
Actinidia07884 Actinidia chinensis HOM05D005707 ORTHO05D057301 8.3e-07 60.5 104 40.4
MD09G1123100 Malus domestica HOM05D005707 ORTHO05D048631 9.1e-06 57.0 44 68.2


User provided reference genes

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