Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1153G036 Amborella trichopoda HOM05D007300 ORTHO05D009301 0.0e+00 1349.7 668 100.0
MBI10_g02388_MAGBIO Magnolia biondii HOM05D007300 ORTHO05D009301 1.4e-170 604.0 675 49.3
TAR627G1006 Trochodendron aralioides HOM05D007300 ORTHO05D009301 8.6e-160 568.2 672 46.3
TWI73G0852 Tripterygium wilfordii HOM05D007300 ORTHO05D009301 2.1e-153 547.0 625 46.1
Aqoxy1G01857 Aquilegia oxysepala HOM05D007300 ORTHO05D009301 4.6e-153 545.8 668 44.9
Cfa001024 Carpinus fangiana HOM05D007300 ORTHO05D009301 1.1e-149 534.6 627 46.1
GSVIVG01021378001 Vitis vinifera HOM05D007300 ORTHO05D009301 1.4e-149 534.3 622 46.6
PSO541G4163 Papaver somniferum HOM05D007300 ORTHO05D009301 2.6e-148 530.0 612 47.2
FAN21G2574 Fragaria x ananassa HOM05D007300 ORTHO05D009301 5.8e-148 528.9 625 46.1
Prupe.4G073700 Prunus persica HOM05D007300 ORTHO05D009301 1.7e-147 527.3 665 44.7
QL05p060322 Quercus lobata HOM05D007300 ORTHO05D009301 3.7e-147 526.2 616 45.5
FvH4_3g06410 Fragaria vesca HOM05D007300 ORTHO05D009301 6.4e-147 525.4 651 44.7
Thecc.06G157700 Theobroma cacao HOM05D007300 ORTHO05D009301 1.9e-146 523.9 663 44.8
Dinv32299 Davidia involucrata HOM05D007300 ORTHO05D009301 4.1e-146 522.7 662 45.6
Potri.001G353800 Populus trichocarpa HOM05D007300 ORTHO05D009301 5.4e-146 522.3 624 45.7
Gohir.D10G038600 Gossypium hirsutum HOM05D007300 ORTHO05D009301 1.2e-145 521.2 668 44.3
Gorai.011G040700 Gossypium raimondii HOM05D007300 ORTHO05D009301 2.1e-145 520.4 668 44.2
CiPaw.10G096200 Carya illinoinensis HOM05D007300 ORTHO05D009301 1.0e-144 518.1 659 43.7
MD05G1291800 Malus domestica HOM05D007300 ORTHO05D009301 1.7e-144 517.3 646 44.1
RcHm_v2.0_Chr5g0012901 Rosa chinensis HOM05D007300 ORTHO05D009301 3.0e-144 516.5 679 43.0
CSS0020184 Camellia sinensis var. sinensis HOM05D007300 ORTHO05D009301 8.6e-144 515.0 662 44.4
Sabra16G0232700 Salix brachista HOM05D007300 ORTHO05D009301 6.2e-142 508.8 686 42.7
Actinidia19486 Actinidia chinensis HOM05D007300 ORTHO05D009301 1.8e-141 507.3 660 43.9
FAN11G2841 Fragaria x ananassa HOM05D007300 ORTHO05D009301 1.5e-140 504.2 711 41.2
Glyma.08G121900 Glycine max HOM05D007300 ORTHO05D009301 1.5e-140 504.2 622 44.1
Cpa.g.sc17.110 Carica papaya HOM05D007300 ORTHO05D009301 2.0e-140 503.8 635 43.5
Nn3g20905 Nelumbo nucifera HOM05D007300 ORTHO05D009301 3.4e-140 503.1 630 45.2
Gohir.A10G037600 Gossypium hirsutum HOM05D007300 ORTHO05D009301 1.3e-139 501.1 668 43.4
CANSAT35G1474 Cannabis sativa HOM05D007300 ORTHO05D009301 6.4e-139 498.8 625 45.4
Haze_05485 Corylus avellana HOM05D007300 ORTHO05D009301 7.1e-138 495.4 699 40.8
COL.COLO4_22798 Corchorus olitorius HOM05D007300 ORTHO05D009301 6.0e-137 492.3 676 43.5
ClCG03G007190 Citrullus lanatus HOM05D007300 ORTHO05D009301 7.8e-137 491.9 672 42.6
Ciclev10014510m.g Citrus clementina HOM05D007300 ORTHO05D009301 1.7e-136 490.7 661 42.4
Lalb_Chr13g0295471 Lupinus albus HOM05D007300 ORTHO05D009301 1.7e-136 490.7 614 44.0
Oeu021524.1 Olea europaea HOM05D007300 ORTHO05D009301 1.7e-136 490.7 615 44.6
Peaxi162Scf00649g00027 Petunia axillaris HOM05D007300 ORTHO05D009301 1.7e-136 490.7 615 44.4
Glyma.05G164500 Glycine max HOM05D007300 ORTHO05D009301 3.0e-136 490.0 628 43.9
CAN.G257.51 Capsicum annuum HOM05D007300 ORTHO05D009301 6.6e-136 488.8 590 45.9
Ca_17871_v3 Cicer arietinum L. HOM05D007300 ORTHO05D009301 1.5e-135 487.6 663 42.1
Manes.17G064900 Manihot esculenta HOM05D007300 ORTHO05D009301 1.9e-135 487.3 656 43.3
Nitab4.5_0001283g0060 Nicotiana tabacum HOM05D007300 ORTHO05D009301 1.9e-135 487.3 625 44.2
Medtr8g088030 Medicago truncatula HOM05D007300 ORTHO05D009301 5.6e-135 485.7 638 42.6
arahy.Tifrunner.gnm1.ann1.D64P8M Arachis hypogaea HOM05D007300 ORTHO05D009301 1.3e-134 484.6 632 42.9
Nitab4.5_0003714g0040 Nicotiana tabacum HOM05D007300 ORTHO05D009301 1.3e-134 484.6 643 44.0
CsaV3_1G032780 Cucumis sativus L. HOM05D007300 ORTHO05D009301 1.6e-134 484.2 615 43.1
Solyc02g071280.3 Solanum lycopersicum HOM05D007300 ORTHO05D009301 4.8e-134 482.6 668 42.7
Atru.chr10.1398 Acer truncatum HOM05D007300 ORTHO05D009301 6.2e-134 482.3 565 46.2
Lj4g0024386 Lotus japonicus HOM05D007300 ORTHO05D009301 2.4e-133 480.3 622 43.2
PGSC0003DMG400003073 Solanum tuberosum HOM05D007300 ORTHO05D009301 4.0e-133 479.6 673 42.5
arahy.Tifrunner.gnm1.ann1.FQ35JE Arachis hypogaea HOM05D007300 ORTHO05D009301 9.0e-133 478.4 646 42.3
Phvul.002G244500 Phaseolus vulgaris HOM05D007300 ORTHO05D009301 3.4e-132 476.5 599 44.9
Atru.chr10.1407 Acer truncatum HOM05D007300 ORTHO05D009301 1.3e-131 474.6 565 46.2
Eucgr.D00343 Eucalyptus grandis HOM05D007300 ORTHO05D009301 1.3e-131 474.6 595 44.0
Sopen02g020340 Solanum pennellii HOM05D007300 ORTHO05D009301 1.3e-131 474.6 668 41.9
VMungo0251G3397 Vigna mungo HOM05D007300 ORTHO05D009301 2.9e-131 473.4 583 45.8
ECA236G2360 Erigeron canadensis HOM05D007300 ORTHO05D009301 2.4e-130 470.3 610 43.1
HPP92_023296 Vanilla planifolia HOM05D007300 ORTHO05D009301 7.1e-130 468.8 637 40.7
HanXRQChr04g0119571 Helianthus annuus HOM05D007300 ORTHO05D009301 1.6e-129 467.6 640 42.2
A06p45940 Brassica napus HOM05D007300 ORTHO05D009301 3.5e-129 466.5 594 41.8
BolC7t43517H Brassica oleracea HOM05D007300 ORTHO05D009301 1.0e-128 464.9 590 41.7
AUR62027555 Chenopodium quinoa HOM05D007300 ORTHO05D009301 2.3e-128 463.8 621 42.4
C07p29650 Brassica napus HOM05D007300 ORTHO05D009301 3.0e-128 463.4 590 41.5
DCAR_027959 Daucus carota HOM05D007300 ORTHO05D009301 3.0e-128 463.4 602 42.5
Carub.0008s0147 Capsella rubella HOM05D007300 ORTHO05D009301 3.9e-128 463.0 650 39.7
Thhalv10000812m.g Eutrema salsugineum HOM05D007300 ORTHO05D009301 1.5e-127 461.1 610 40.3
AT5G46420 Arabidopsis thaliana HOM05D007300 ORTHO05D009301 1.9e-127 460.7 630 39.8
Sp2g11270 Schrenkiella parvula HOM05D007300 ORTHO05D009301 1.9e-127 460.7 612 40.2
CARHR175340 Cardamine hirsuta HOM05D007300 ORTHO05D009301 1.6e-126 457.6 686 38.9
THA.LOC104827733 Tarenaya hassleriana HOM05D007300 ORTHO05D009301 4.8e-126 456.1 672 39.4
Lsat_1_v5_gn_7_31040 Lactuca sativa HOM05D007300 ORTHO05D009301 8.1e-126 455.3 659 41.3
TPR.G6793 Trifolium pratense HOM05D007300 ORTHO05D009301 8.1e-126 455.3 660 40.0
Aa31LG9G6430 Aethionema arabicum HOM05D007300 ORTHO05D009301 3.1e-125 453.4 650 38.5
Sc05g0006590 Simmondsia chinensis HOM05D007300 ORTHO05D009301 6.9e-125 452.2 670 39.6
AL8G11990 Arabidopsis lyrata HOM05D007300 ORTHO05D009301 9.0e-125 451.8 644 39.1
SalBow8G1735 Salvia bowleyana HOM05D007300 ORTHO05D009301 1.5e-124 451.1 605 41.5
SGA_v2.0_scaffold1G00132 Striga asiatica HOM05D007300 ORTHO05D009301 2.0e-124 450.7 681 41.7
AUR62035801 Chenopodium quinoa HOM05D007300 ORTHO05D009301 4.5e-124 449.5 620 41.6
BraA06t27457Z Brassica rapa HOM05D007300 ORTHO05D009301 9.9e-124 448.4 643 39.8
Lj1C1181T32 Lonicera japonica HOM05D007300 ORTHO05D009301 1.1e-122 444.9 674 40.4
Migut.M00959 Erythranthe guttata HOM05D007300 ORTHO05D009301 1.9e-122 444.1 612 40.8
Psat7g066760 Pisum sativum HOM05D007300 ORTHO05D009301 3.2e-122 443.4 661 38.7
PGR044G1273 Punica granatum HOM05D007300 ORTHO05D009301 1.8e-117 427.6 565 42.3
Duzib235G1110 Durio zibethinus HOM05D007300 ORTHO05D009301 4.9e-115 419.5 670 38.2
EL10Ac8g19794 Beta vulgaris HOM05D007300 ORTHO05D009301 1.9e-103 380.9 620 38.1
SEGI_38698 Sequoiadendron giganteum HOM05D007300 ORTHO05D009301 8.2e-102 375.6 656 34.0
PSO675G3105 Papaver somniferum HOM05D007300 ORTHO05D009301 5.5e-98 362.8 360 52.8
FAN16G1565 Fragaria x ananassa HOM05D007300 ORTHO05D009301 1.5e-95 354.8 485 41.9
Sed0024786 Sechium edule HOM05D007300 ORTHO05D009301 2.2e-91 340.9 354 51.7
HPP92_023271 Vanilla planifolia HOM05D007300 ORTHO05D009301 1.9e-90 337.8 683 32.5
CDE06G2820 Ceratophyllum demersum HOM05D007300 ORTHO05D009301 2.6e-84 317.4 288 57.6
unitig_92.g28150 Utricularia gibba HOM05D007300 ORTHO05D009301 5.5e-82 309.7 472 39.8
Mapoly0019s0078 Marchantia polymorpha HOM05D007300 ORTHO05D009301 7.2e-82 309.3 742 29.9
Zm00001eb296050 Zea mays HOM05D007300 ORTHO05D009301 6.7e-80 302.8 301 50.2
Pp3c15_14250 Physcomitrium patens HOM05D007300 ORTHO05D009301 2.2e-70 271.2 546 31.7
AagrBONN_evm.TU.Sc2ySwM_228.1844 Anthoceros agrestis HOM05D007300 ORTHO05D004905 5.7e-63 246.5 579 30.7
Os05g0566300 Oryza sativa ssp. japonica HOM05D007300 ORTHO05D009301 4.9e-62 243.4 272 48.9
Zm00001eb349440 Zea mays HOM05D007300 ORTHO05D009301 6.4e-46 189.9 176 54.0
MELO3C002704.2 Cucumis melo HOM05D007300 ORTHO05D009301 2.4e-45 188.0 360 31.9
SEGI_17563 Sequoiadendron giganteum HOM05D007300 ORTHO05D009301 4.6e-36 157.1 122 53.3
Gorai.004G093400 Gossypium raimondii HOM05D007300 ORTHO05D009301 1.2e-33 149.1 188 47.3
Gohir.D08G088700 Gossypium hirsutum HOM05D007300 ORTHO05D009301 4.7e-33 147.1 168 50.0
Pp3c4_17200 Physcomitrium patens HOM05D003927 ORTHO05D004905 7.3e-26 123.2 435 22.5
MCO05G669 Micromonas commoda HOM05D007300 ORTHO05D009301 1.1e-24 119.4 228 34.2
CDE06G1765 Ceratophyllum demersum HOM05D007300 ORTHO05D009301 2.0e-23 115.2 152 37.5
Cre03.g191950 Chlamydomonas reinhardtii HOM05D007300 ORTHO05D009301 1.2e-20 105.9 238 29.4
Zm00001eb184690 Zea mays HOM05D007300 ORTHO05D009301 6.0e-20 103.6 83 53.0
Cfa023099 Carpinus fangiana HOM05D003927 ORTHO05D004905 5.6e-10 70.5 308 23.1


User provided reference genes

Program Settings