Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0820G152 Amborella trichopoda HOM05D010077 ORTHO05D013698 0.0e+00 1142.5 567 100.0
ATR0820G285 Amborella trichopoda HOM05D010077 ORTHO05D013698 8.2e-228 793.9 564 72.5
ATR0820G089 Amborella trichopoda HOM05D010077 ORTHO05D013698 1.4e-224 783.1 567 72.0
ATR0820G252 Amborella trichopoda HOM05D010077 ORTHO05D013698 2.0e-213 746.1 544 70.6
ATR0439G001 Amborella trichopoda HOM05D010077 ORTHO05D013698 9.1e-211 737.3 564 68.8
ATR0820G299 Amborella trichopoda HOM05D010077 ORTHO05D013698 5.9e-178 628.2 566 61.5
ATR0820G099 Amborella trichopoda HOM05D010077 ORTHO05D013698 1.0e-169 600.9 590 56.4
ATR0820G235 Amborella trichopoda HOM05D010077 ORTHO05D013698 7.3e-168 594.7 588 56.0
ATR0820G260 Amborella trichopoda HOM05D010077 ORTHO05D013698 9.6e-120 434.9 467 51.8
ATR0820G075 Amborella trichopoda HOM05D010077 ORTHO05D013698 1.3e-113 414.5 519 46.8
ATR1159G077 Amborella trichopoda HOM05D010077 ORTHO05D013698 1.8e-110 404.1 395 59.2
ATR0820G047 Amborella trichopoda HOM05D010077 ORTHO05D013698 6.9e-110 402.1 544 44.1
ATR0820G009 Amborella trichopoda HOM05D010077 ORTHO05D013698 8.9e-41 172.6 129 65.9
ATR1159G070 Amborella trichopoda HOM05D010077 ORTHO05D013698 3.4e-40 170.6 112 79.5
ATR0820G141 Amborella trichopoda HOM05D010077 ORTHO05D013698 3.9e-28 130.6 164 42.1
MBI03_g20877_MAGBIO Magnolia biondii HOM05D000572 ORTHO05D002399 1.6e-26 125.2 225 34.7
Lalb_Chr01g0008651 Lupinus albus HOM05D000572 ORTHO05D002399 6.2e-26 123.2 285 31.9
Atru.chr12.1878 Acer truncatum HOM05D000572 ORTHO05D002399 1.1e-25 122.5 281 31.3
ECA236G0624 Erigeron canadensis HOM05D000572 ORTHO05D002399 1.4e-25 122.1 239 33.5
Lsat_1_v5_gn_7_75121 Lactuca sativa HOM05D000572 ORTHO05D002399 2.4e-25 121.3 225 34.7
Cpa.g.sc37.192 Carica papaya HOM05D000572 ORTHO05D002399 5.3e-25 120.2 223 34.1
arahy.Tifrunner.gnm1.ann1.5512QZ Arachis hypogaea HOM05D000572 ORTHO05D002399 1.2e-24 119.0 232 32.8
arahy.Tifrunner.gnm1.ann1.I0VWWF Arachis hypogaea HOM05D000572 ORTHO05D002399 1.2e-24 119.0 232 32.8
HanXRQChr11g0347301 Helianthus annuus HOM05D000572 ORTHO05D002399 1.2e-24 119.0 227 33.0
Ca_03350_v3 Cicer arietinum L. HOM05D000572 ORTHO05D002399 1.5e-24 118.6 221 34.8
Lj5A282T76 Lonicera japonica HOM05D000572 ORTHO05D002399 1.5e-24 118.6 362 28.7
Carub.0004s0387 Capsella rubella HOM05D000572 ORTHO05D002399 2.0e-24 118.2 218 32.6
DCAR_003283 Daucus carota HOM05D000572 ORTHO05D002399 2.0e-24 118.2 311 28.3
Thecc.01G144800 Theobroma cacao HOM05D000572 ORTHO05D002399 2.0e-24 118.2 256 33.2
Lj3g0025806 Lotus japonicus HOM05D000572 ORTHO05D002399 3.4e-24 117.5 274 31.8
AUR62043444 Chenopodium quinoa HOM05D000572 ORTHO05D002399 5.8e-24 116.7 311 29.9
AUR62021310 Chenopodium quinoa HOM05D000572 ORTHO05D002399 9.9e-24 115.9 210 36.2
Gohir.D04G042500 Gossypium hirsutum HOM05D000572 ORTHO05D002399 9.9e-24 115.9 360 28.3
Duzib147G0313 Durio zibethinus HOM05D000572 ORTHO05D002399 1.3e-23 115.5 225 34.7
MD15G1231100 Malus domestica HOM05D000572 ORTHO05D002399 1.7e-23 115.2 252 33.3
unitig_26.g9010 Utricularia gibba HOM05D000572 ORTHO05D002399 2.2e-23 114.8 343 29.4
EL10Ac8g18295 Beta vulgaris HOM05D000572 ORTHO05D002399 2.9e-23 114.4 266 32.7
Ciclev10027585m.g Citrus clementina HOM05D000572 ORTHO05D002399 2.9e-23 114.4 213 35.2
AL7G42360 Arabidopsis lyrata HOM05D000572 ORTHO05D002399 3.8e-23 114.0 316 26.6
HPP92_005786 Vanilla planifolia HOM05D000572 ORTHO05D002399 3.8e-23 114.0 369 28.5
Prupe.7G183100 Prunus persica HOM05D000572 ORTHO05D002399 4.9e-23 113.6 232 32.8
Ah.04g152120 Amaranthus hybridus HOM05D000572 ORTHO05D002399 6.4e-23 113.2 244 33.2
CDE12G0633 Ceratophyllum demersum HOM05D000572 ORTHO05D002399 6.4e-23 113.2 306 31.4
Gohir.A05G373000 Gossypium hirsutum HOM05D000572 ORTHO05D002399 6.4e-23 113.2 262 31.7
Medtr2g046020 Medicago truncatula HOM05D000572 ORTHO05D002399 6.4e-23 113.2 252 32.9
Ah.01g020670 Amaranthus hybridus HOM05D000572 ORTHO05D002399 8.4e-23 112.8 241 34.0
AL7G42980 Arabidopsis lyrata HOM05D000572 ORTHO05D002399 8.4e-23 112.8 260 29.6
CANSAT01G1917 Cannabis sativa HOM05D000572 ORTHO05D002399 8.4e-23 112.8 226 32.3
AUR62001561 Chenopodium quinoa HOM05D000572 ORTHO05D002399 8.4e-23 112.8 187 36.9
Lj2g0020412 Lotus japonicus HOM05D000572 ORTHO05D002399 8.4e-23 112.8 274 31.4
SGA_v2.0_scaffold8G04469 Striga asiatica HOM05D000572 ORTHO05D002399 8.4e-23 112.8 338 29.3
DCAR_019941 Daucus carota HOM05D000572 ORTHO05D002399 1.1e-22 112.5 243 31.7
Os07g0182900 Oryza sativa ssp. japonica HOM05D000572 ORTHO05D002399 1.1e-22 112.5 252 31.3
TPR.G31040 Trifolium pratense HOM05D000572 ORTHO05D002399 1.1e-22 112.5 222 33.8
VMungo0464G1362 Vigna mungo HOM05D000572 ORTHO05D002399 1.1e-22 112.5 222 32.9
Gorai.012G048000 Gossypium raimondii HOM05D000572 ORTHO05D002399 1.4e-22 112.1 262 31.3
AT5G49160 Arabidopsis thaliana HOM05D000572 ORTHO05D002399 2.4e-22 111.3 232 30.6
Lalb_Chr03g0033391 Lupinus albus HOM05D000572 ORTHO05D002399 2.4e-22 111.3 284 29.6
ClCG11G000400 Citrullus lanatus HOM05D000572 ORTHO05D002399 5.4e-22 110.2 225 32.9
DCAR_009626 Daucus carota HOM05D000572 ORTHO05D002399 5.4e-22 110.2 263 33.1
MD02G1115100 Malus domestica HOM05D000572 ORTHO05D002399 7.1e-22 109.8 263 32.3
Nitab4.5_0004345g0030 Nicotiana tabacum HOM05D000572 ORTHO05D002399 7.1e-22 109.8 272 30.1
CSS0016257 Camellia sinensis var. sinensis HOM05D000572 ORTHO05D002399 9.3e-22 109.4 246 31.3
QL10p035076 Quercus lobata HOM05D000572 ORTHO05D002399 9.3e-22 109.4 244 30.7
CSS0042457 Camellia sinensis var. sinensis HOM05D000572 ORTHO05D002399 1.6e-21 108.6 246 31.3
Carub.0007s2893 Capsella rubella HOM05D000572 ORTHO05D002399 1.6e-21 108.6 267 30.0
Phvul.004G133200 Phaseolus vulgaris HOM05D000572 ORTHO05D002399 1.6e-21 108.6 329 30.7
Hund15395 Selenicereus undatus HOM05D000572 ORTHO05D002399 1.6e-21 108.6 275 31.3
Glyma.06G178200 Glycine max HOM05D000572 ORTHO05D002399 2.1e-21 108.2 284 31.0
SGA_v2.0_scaffold122G33283 Striga asiatica HOM05D000572 ORTHO05D002399 2.1e-21 108.2 257 33.5
TAR628G1524 Trochodendron aralioides HOM05D000572 ORTHO05D002399 2.1e-21 108.2 284 30.6
AT4G14140 Arabidopsis thaliana HOM05D000572 ORTHO05D002399 2.7e-21 107.8 221 31.2
Dinv19128 Davidia involucrata HOM05D000572 ORTHO05D002399 2.7e-21 107.8 328 29.6
VMungo0464G1539 Vigna mungo HOM05D000572 ORTHO05D002399 2.7e-21 107.8 246 32.5
Os03g0798300 Oryza sativa ssp. japonica HOM05D000572 ORTHO05D002399 3.5e-21 107.5 210 32.9
MSTRG.27892 Avicennia marina HOM05D000572 ORTHO05D002399 4.6e-21 107.1 253 32.4
CiPaw.12G053900 Carya illinoinensis HOM05D000572 ORTHO05D002399 4.6e-21 107.1 256 30.9
Glyma.04G187600 Glycine max HOM05D000572 ORTHO05D002399 4.6e-21 107.1 232 31.0
Sc02g0000170 Simmondsia chinensis HOM05D000572 ORTHO05D002399 6.0e-21 106.7 245 32.7
Aqoxy7G03575 Aquilegia oxysepala HOM05D000572 ORTHO05D002399 7.9e-21 106.3 188 35.1
Nn5g27348 Nelumbo nucifera HOM05D000572 ORTHO05D002399 1.0e-20 105.9 264 30.3
Nn5g27349 Nelumbo nucifera HOM05D000572 ORTHO05D002399 1.0e-20 105.9 264 30.3
PSO210G2968 Papaver somniferum HOM05D000572 ORTHO05D002399 1.0e-20 105.9 512 24.0
Eucgr.I00036 Eucalyptus grandis HOM05D000572 ORTHO05D002399 1.3e-20 105.5 277 28.5
AL8G22690 Arabidopsis lyrata HOM05D000572 ORTHO05D002399 1.7e-20 105.1 248 29.0
AagrBONN_evm.TU.Sc2ySwM_368.2421 Anthoceros agrestis HOM05D000572 ORTHO05D002399 2.3e-20 104.8 168 33.3
Manes.13G119400 Manihot esculenta HOM05D000572 ORTHO05D002399 2.3e-20 104.8 247 30.4
Nitab4.5_0004640g0010 Nicotiana tabacum HOM05D000572 ORTHO05D002399 2.3e-20 104.8 272 29.4
Potri.018G138000 Populus trichocarpa HOM05D000572 ORTHO05D002399 2.3e-20 104.8 324 27.8
TPR.G12077 Trifolium pratense HOM05D000572 ORTHO05D002399 2.3e-20 104.8 230 31.7
Dinv29674 Davidia involucrata HOM05D000572 ORTHO05D002399 3.9e-20 104.0 266 31.2
Potri.T046100 Populus trichocarpa HOM05D000572 ORTHO05D002399 3.9e-20 104.0 288 28.8
Zm00001eb301630 Zea mays HOM05D000572 ORTHO05D002399 3.9e-20 104.0 258 31.0
Zm00001eb301620 Zea mays HOM05D000572 ORTHO05D002399 5.1e-20 103.6 258 31.0
Rhsim11G0118300 Rhododendron simsii HOM05D000572 ORTHO05D002399 6.6e-20 103.2 303 29.0
Carub.0008s0898 Capsella rubella HOM05D000572 ORTHO05D002399 8.7e-20 102.8 229 31.0
Cc02_g23510 Coffea canephora HOM05D000572 ORTHO05D002399 8.7e-20 102.8 196 31.1
AT4G08990 Arabidopsis thaliana HOM05D000572 ORTHO05D002399 1.1e-19 102.4 303 25.4
CAN.G1330.38 Capsicum annuum HOM05D000572 ORTHO05D002399 1.1e-19 102.4 278 29.5
Cc07_g19880 Coffea canephora HOM05D000572 ORTHO05D002399 1.1e-19 102.4 225 33.3
Potri.004G134000 Populus trichocarpa HOM05D000572 ORTHO05D002399 1.1e-19 102.4 244 27.5
Solyc11g030600.3 Solanum lycopersicum HOM05D000572 ORTHO05D002399 1.1e-19 102.4 274 29.6
CARHR070500 Cardamine hirsuta HOM05D000572 ORTHO05D002399 1.5e-19 102.1 251 30.7
Lj2A766T19 Lonicera japonica HOM05D000572 ORTHO05D002399 1.5e-19 102.1 465 25.8
Sabra19G0000100 Salix brachista HOM05D000572 ORTHO05D002399 1.5e-19 102.1 300 28.0
Haze_19377 Corylus avellana HOM05D000572 ORTHO05D002399 2.5e-19 101.3 255 31.0
Manes.13G155232 Manihot esculenta HOM05D000572 ORTHO05D002399 2.5e-19 101.3 248 29.0
Migut.N00875 Erythranthe guttata HOM05D000572 ORTHO05D002399 3.3e-19 100.9 232 33.2
Lj5g0006387 Lotus japonicus HOM05D000572 ORTHO05D002399 3.3e-19 100.9 210 33.3
Oeu032220.1 Olea europaea HOM05D000572 ORTHO05D002399 3.3e-19 100.9 257 30.0
CARHR182510 Cardamine hirsuta HOM05D000572 ORTHO05D002399 5.6e-19 100.1 248 29.8
Sp4g01970 Schrenkiella parvula HOM05D000572 ORTHO05D002399 5.6e-19 100.1 274 28.5
Sopen11g013460 Solanum pennellii HOM05D000572 ORTHO05D002399 5.6e-19 100.1 286 29.0
FvH4_1g10300 Fragaria vesca HOM05D000572 ORTHO05D002399 7.4e-19 99.8 223 30.5
FAN19G1502 Fragaria x ananassa HOM05D000572 ORTHO05D002399 7.4e-19 99.8 223 30.5
CDE01G0045 Ceratophyllum demersum HOM05D000572 ORTHO05D002399 9.6e-19 99.4 146 35.6
AUR62028017 Chenopodium quinoa HOM05D000572 ORTHO05D002399 9.6e-19 99.4 192 31.8
Thhalv10005683m.g Eutrema salsugineum HOM05D000572 ORTHO05D002399 9.6e-19 99.4 273 28.6
ATR0820G180 Amborella trichopoda HOM05D010077 ORTHO05D013698 1.3e-18 99.0 240 30.8
Thhalv10003514m.g Eutrema salsugineum HOM05D000572 ORTHO05D002399 1.3e-18 99.0 258 28.3
FAN26G0750 Fragaria x ananassa HOM05D000572 ORTHO05D002399 1.3e-18 99.0 223 29.6
Sp2g19890 Schrenkiella parvula HOM05D000572 ORTHO05D002399 1.3e-18 99.0 239 31.0
RcHm_v2.0_Chr5g0051581 Rosa chinensis HOM05D000572 ORTHO05D002399 2.1e-18 98.2 233 30.5
Aqoxy7G03579 Aquilegia oxysepala HOM05D000572 ORTHO05D002399 3.6e-18 97.4 253 29.6
Medtr3g026210 Medicago truncatula HOM05D000572 ORTHO05D002399 3.6e-18 97.4 204 33.8
THA.LOC104823726 Tarenaya hassleriana HOM05D000572 ORTHO05D002399 3.6e-18 97.4 253 28.9
ATR0584G123 Amborella trichopoda HOM05D000572 ORTHO05D002399 4.8e-18 97.1 263 30.0
TPR.G37134 Trifolium pratense HOM05D000572 ORTHO05D002399 4.8e-18 97.1 258 27.9
RcHm_v2.0_Chr2g0097141 Rosa chinensis HOM05D000572 ORTHO05D002399 6.2e-18 96.7 180 31.1
SEGI_36703 Sequoiadendron giganteum HOM05D000572 ORTHO05D002399 6.2e-18 96.7 276 26.8
Aqoxy1G02545 Aquilegia oxysepala HOM05D000572 ORTHO05D002399 8.1e-18 96.3 263 28.9
C08p40170 Brassica napus HOM05D000572 ORTHO05D002399 8.1e-18 96.3 225 30.7
SEGI_11646 Sequoiadendron giganteum HOM05D000572 ORTHO05D002399 1.1e-17 95.9 259 27.0
Aa31LG11G8250 Aethionema arabicum HOM05D000572 ORTHO05D002399 1.4e-17 95.5 251 28.3
PSO447G0024 Papaver somniferum HOM05D000572 ORTHO05D002399 1.4e-17 95.5 227 31.3
C04p52290 Brassica napus HOM05D000572 ORTHO05D002399 1.8e-17 95.1 223 29.6
BolC4t26803H Brassica oleracea HOM05D000572 ORTHO05D002399 1.8e-17 95.1 223 29.6
SEGI_20274 Sequoiadendron giganteum HOM05D000572 ORTHO05D002399 1.8e-17 95.1 276 27.5
BcaC02g08585 Brassica carinata HOM05D000572 ORTHO05D002399 3.1e-17 94.4 223 30.0
BolC8t51587H Brassica oleracea HOM05D000572 ORTHO05D002399 3.1e-17 94.4 212 31.1
CARHR287820 Cardamine hirsuta HOM05D000572 ORTHO05D002399 3.1e-17 94.4 229 28.8
Atru.chr1.1803 Acer truncatum HOM05D000572 ORTHO05D002399 5.3e-17 93.6 217 31.3
CsaV3_5G013990 Cucumis sativus L. HOM05D000572 ORTHO05D002399 5.3e-17 93.6 227 28.6
Sabra04G0084200 Salix brachista HOM05D000572 ORTHO05D002399 6.9e-17 93.2 281 26.0
BraA04t17374Z Brassica rapa HOM05D000572 ORTHO05D002399 9.0e-17 92.8 252 28.6
MELO3C026448.2 Cucumis melo HOM05D000572 ORTHO05D002399 9.0e-17 92.8 223 29.1
Medtr6g065580 Medicago truncatula HOM05D000572 ORTHO05D002399 9.0e-17 92.8 188 33.0
BcaC07g41015 Brassica carinata HOM05D000572 ORTHO05D002399 1.2e-16 92.4 225 29.8
GSVIVG01000263001 Vitis vinifera HOM05D000572 ORTHO05D002399 1.2e-16 92.4 129 37.2
PGSC0003DMG400030941 Solanum tuberosum HOM05D000572 ORTHO05D002399 1.5e-16 92.0 203 30.5
TWI63G0302 Tripterygium wilfordii HOM05D000572 ORTHO05D002399 1.5e-16 92.0 526 23.0
GSVIVG01000262001 Vitis vinifera HOM05D000572 ORTHO05D002399 2.0e-16 91.7 195 27.7
SMO358G0070 Selaginella moellendorffii HOM05D000572 ORTHO05D002399 4.5e-16 90.5 249 27.7
THA.LOC104820805 Tarenaya hassleriana HOM05D000572 ORTHO05D002399 4.5e-16 90.5 248 26.6
A09p57170 Brassica napus HOM05D000572 ORTHO05D002399 5.8e-16 90.1 268 26.1
BraA09t41110Z Brassica rapa HOM05D000572 ORTHO05D002399 5.8e-16 90.1 268 26.1
PGR119G1310 Punica granatum HOM05D000572 ORTHO05D002399 7.6e-16 89.7 215 30.2
vmacro01683 Vaccinium macrocarpon HOM05D000572 ORTHO05D002399 1.3e-15 89.0 451 23.7
HanXRQChr04g0120041 Helianthus annuus HOM05D000572 ORTHO05D002399 2.2e-15 88.2 299 27.4
vmacro19834 Vaccinium macrocarpon HOM05D000572 ORTHO05D002399 2.2e-15 88.2 144 35.4
AT4G13610 Arabidopsis thaliana HOM05D000572 ORTHO05D002399 2.9e-15 87.8 167 32.3
Oeu046383.1 Olea europaea HOM05D000572 ORTHO05D002399 2.9e-15 87.8 126 37.3
Psat3g159080 Pisum sativum HOM05D000572 ORTHO05D002399 2.9e-15 87.8 125 40.8
Thhalv10000011m.g Eutrema salsugineum HOM05D000572 ORTHO05D002399 3.8e-15 87.4 238 28.2
CARHR185430 Cardamine hirsuta HOM05D000572 ORTHO05D002399 6.4e-15 86.7 253 26.1
Sed0009647 Sechium edule HOM05D000572 ORTHO05D002399 1.4e-14 85.5 189 29.1
Peaxi162Scf01053g00039 Petunia axillaris HOM05D000572 ORTHO05D002399 1.9e-14 85.1 227 29.1
FAN11G2057 Fragaria x ananassa HOM05D000572 ORTHO05D002399 3.2e-14 84.3 168 32.1
SHI05188 Sapria himalayana HOM05D000572 ORTHO05D002399 7.1e-14 83.2 240 30.0
Ciclev10003166m.g Citrus clementina HOM05D000572 ORTHO05D002399 9.3e-14 82.8 186 30.6
QL02p103162 Quercus lobata HOM05D000572 ORTHO05D002399 1.6e-13 82.0 139 33.1
CAN.G868.5 Capsicum annuum HOM05D000572 ORTHO05D002399 2.7e-13 81.3 165 30.9
Psat3g159120 Pisum sativum HOM05D000572 ORTHO05D002399 7.9e-13 79.7 184 31.0
TWI15G0599 Tripterygium wilfordii HOM05D000572 ORTHO05D002399 1.0e-12 79.3 276 26.8
Ciclev10003543m.g Citrus clementina HOM05D000572 ORTHO05D002399 1.8e-12 78.6 121 34.7
Pp3c11_20540 Physcomitrium patens HOM05D000572 ORTHO05D002399 6.2e-10 70.1 322 24.8
FAN21G2448 Fragaria x ananassa HOM05D000572 ORTHO05D002399 8.1e-10 69.7 137 35.8
BcaB06g27851 Brassica carinata HOM05D000572 ORTHO05D002399 4.0e-09 67.4 505 21.6
ATR1122G001 Amborella trichopoda HOM05D010077 ORTHO05D067316 7.1e-06 56.6 54 46.3


User provided reference genes

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