Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0767G209 Amborella trichopoda HOM05D005935 ORTHO05D007012 7.9e-96 354.0 206 100.0
CDE11G0767 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 2.8e-77 292.4 204 84.8
CDE05G0147 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 4.8e-77 291.6 204 84.8
SEGI_34613 Sequoiadendron giganteum HOM05D005935 ORTHO05D007012 4.1e-76 288.5 204 80.4
TAR362G1094 Trochodendron aralioides HOM05D005935 ORTHO05D007012 5.5e-73 278.1 204 81.9
Nn3g21642 Nelumbo nucifera HOM05D005935 ORTHO05D007012 1.6e-72 276.6 200 84.0
ClCG02G015080 Citrullus lanatus HOM05D005935 ORTHO05D007012 4.6e-72 275.0 204 81.9
MELO3C004198.2 Cucumis melo HOM05D005935 ORTHO05D007012 4.6e-72 275.0 204 81.9
Lsat_1_v5_gn_5_102820 Lactuca sativa HOM05D005935 ORTHO05D007012 6.1e-72 274.6 204 85.3
EL10Ac4g09829 Beta vulgaris HOM05D005935 ORTHO05D007012 7.9e-72 274.2 204 81.9
CsaV3_2G006940 Cucumis sativus L. HOM05D005935 ORTHO05D007012 2.3e-71 272.7 204 80.9
SGA_v2.0_scaffold81G26126 Striga asiatica HOM05D005935 ORTHO05D007012 3.0e-71 272.3 204 82.8
Aqoxy2G00839 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 3.9e-71 271.9 205 83.9
Manes.09G175700 Manihot esculenta HOM05D005935 ORTHO05D007012 3.9e-71 271.9 199 82.9
CiPaw.07G028100 Carya illinoinensis HOM05D005935 ORTHO05D007012 2.5e-70 269.2 204 79.9
Ah.06g188880 Amaranthus hybridus HOM05D005935 ORTHO05D007012 4.3e-70 268.5 204 80.4
GSVIVG01031220001 Vitis vinifera HOM05D005935 ORTHO05D007012 5.7e-70 268.1 205 81.5
MSTRG.27950 Avicennia marina HOM05D005935 ORTHO05D007012 7.4e-70 267.7 204 82.4
Sed0001365 Sechium edule HOM05D005935 ORTHO05D007012 7.4e-70 267.7 204 79.4
Haze_04079 Corylus avellana HOM05D005935 ORTHO05D007012 2.8e-69 265.8 199 80.9
SGA_v2.0_scaffold80G25879 Striga asiatica HOM05D005935 ORTHO05D007012 2.8e-69 265.8 204 80.9
PGR031G1309 Punica granatum HOM05D005935 ORTHO05D007012 1.1e-68 263.8 201 81.1
Glyma.19G228900 Glycine max HOM05D005935 ORTHO05D007012 1.4e-68 263.5 204 78.9
Phvul.001G225500 Phaseolus vulgaris HOM05D005935 ORTHO05D007012 1.4e-68 263.5 204 78.9
Prupe.6G314900 Prunus persica HOM05D005935 ORTHO05D007012 1.4e-68 263.5 204 80.9
Cc02_g34830 Coffea canephora HOM05D005935 ORTHO05D007012 1.8e-68 263.1 204 79.9
Dinv24425 Davidia involucrata HOM05D005935 ORTHO05D007012 1.8e-68 263.1 205 80.0
TAR636G0846 Trochodendron aralioides HOM05D005935 ORTHO05D007012 3.1e-68 262.3 205 81.5
Aqoxy4G02482 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 4.1e-68 261.9 205 81.0
Eucgr.H03282 Eucalyptus grandis HOM05D005935 ORTHO05D007012 5.3e-68 261.5 204 78.4
Migut.N01391 Erythranthe guttata HOM05D005935 ORTHO05D007012 6.9e-68 261.2 204 78.4
MD04G1195100 Malus domestica HOM05D005935 ORTHO05D007012 9.1e-68 260.8 200 82.5
MD12G1207200 Malus domestica HOM05D005935 ORTHO05D007012 9.1e-68 260.8 201 83.1
RcHm_v2.0_Chr3g0456881 Rosa chinensis HOM05D005935 ORTHO05D007012 9.1e-68 260.8 199 81.4
SalBow3G1520 Salvia bowleyana HOM05D005935 ORTHO05D007012 2.0e-67 259.6 204 79.9
Os03g0831900 Oryza sativa ssp. japonica HOM05D005935 ORTHO05D007012 2.6e-67 259.2 196 81.1
Lj1g0021681 Lotus japonicus HOM05D005935 ORTHO05D007012 3.4e-67 258.8 200 81.0
Atru.chr2.148 Acer truncatum HOM05D005935 ORTHO05D007012 4.5e-67 258.5 205 77.1
arahy.Tifrunner.gnm1.ann1.I9BDFC Arachis hypogaea HOM05D005935 ORTHO05D007012 2.2e-66 256.1 204 76.5
FvH4_6g07240 Fragaria vesca HOM05D005935 ORTHO05D007012 5.0e-66 255.0 197 80.2
arahy.Tifrunner.gnm1.ann1.G5WI6L Arachis hypogaea HOM05D005935 ORTHO05D007012 6.5e-66 254.6 204 76.5
arahy.Tifrunner.gnm1.ann1.H1X696 Arachis hypogaea HOM05D005935 ORTHO05D007012 6.5e-66 254.6 204 76.5
Ca_09298_v3 Cicer arietinum L. HOM05D005935 ORTHO05D007012 6.5e-66 254.6 204 78.4
Zm00001eb121760 Zea mays HOM05D005935 ORTHO05D007012 6.5e-66 254.6 195 77.4
arahy.Tifrunner.gnm1.ann1.7UDZ1N Arachis hypogaea HOM05D005935 ORTHO05D007012 1.4e-65 253.4 204 74.0
CAN.G1715.16 Capsicum annuum HOM05D005935 ORTHO05D007012 3.2e-65 252.3 204 79.4
Glyma.03G231900 Glycine max HOM05D005935 ORTHO05D007012 3.2e-65 252.3 204 76.5
Hma1.2p1_0008F-1.1_g005750 Hydrangea macrophylla HOM05D005935 ORTHO05D007012 1.2e-64 250.4 204 76.0
Sopen01g043840 Solanum pennellii HOM05D005935 ORTHO05D007012 1.2e-64 250.4 204 77.9
Solyc01g100330.3 Solanum lycopersicum HOM05D005935 ORTHO05D007012 2.7e-64 249.2 204 77.5
PGSC0003DMG400002806 Solanum tuberosum HOM05D005935 ORTHO05D007012 2.7e-64 249.2 204 77.5
FAN05G5324 Fragaria x ananassa HOM05D005935 ORTHO05D007012 3.6e-64 248.8 206 77.2
FAN14G3557 Fragaria x ananassa HOM05D005935 ORTHO05D007012 4.6e-64 248.4 206 77.2
HanXRQChr10g0299201 Helianthus annuus HOM05D005935 ORTHO05D007012 6.1e-64 248.1 204 78.4
VMungo1383G1193 Vigna mungo HOM05D005935 ORTHO05D007012 6.1e-64 248.1 197 77.7
QL03p018299 Quercus lobata HOM05D005935 ORTHO05D007012 7.9e-64 247.7 204 76.5
FAN02G1619 Fragaria x ananassa HOM05D005935 ORTHO05D007012 1.0e-63 247.3 206 76.7
unitig_21.g20172 Utricularia gibba HOM05D005935 ORTHO05D007012 1.0e-63 247.3 205 77.6
TWI36G1229 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 1.4e-63 246.9 199 77.4
Cpa.g.sc48.144 Carica papaya HOM05D005935 ORTHO05D007012 2.3e-63 246.1 199 77.9
TWI56G1463 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 3.9e-63 245.4 199 77.4
Peaxi162Scf00673g00126 Petunia axillaris HOM05D005935 ORTHO05D007012 6.7e-63 244.6 195 81.0
Mapoly0111s0002 Marchantia polymorpha HOM05D005935 ORTHO05D007012 1.1e-62 243.8 196 78.1
Ciclev10002528m.g Citrus clementina HOM05D005935 ORTHO05D007012 2.0e-62 243.0 199 77.4
Thecc.05G321000 Theobroma cacao HOM05D005935 ORTHO05D007012 2.0e-62 243.0 199 76.4
vmacro01555 Vaccinium macrocarpon HOM05D005935 ORTHO05D007012 2.0e-62 243.0 247 65.2
Pp3c4_20180 Physcomitrium patens HOM05D005935 ORTHO05D007012 2.6e-62 242.7 201 75.1
BraA05t22944Z Brassica rapa HOM05D002110 ORTHO05D007012 3.3e-62 242.3 201 75.1
Gohir.D08G223300 Gossypium hirsutum HOM05D005935 ORTHO05D007012 3.3e-62 242.3 199 77.4
Gorai.004G237200 Gossypium raimondii HOM05D005935 ORTHO05D007012 3.3e-62 242.3 199 77.4
AUR62000683 Chenopodium quinoa HOM05D005935 ORTHO05D007012 4.4e-62 241.9 204 76.0
PSO170G3047 Papaver somniferum HOM05D005935 ORTHO05D007012 4.4e-62 241.9 199 76.4
PSO357G0321 Papaver somniferum HOM05D005935 ORTHO05D007012 4.4e-62 241.9 199 76.4
Lalb_Chr18g0046051 Lupinus albus HOM05D005935 ORTHO05D007012 5.7e-62 241.5 205 76.1
Medtr7g112060 Medicago truncatula HOM05D005935 ORTHO05D007012 5.7e-62 241.5 199 78.4
Gohir.A08G206600 Gossypium hirsutum HOM05D005935 ORTHO05D007012 7.4e-62 241.1 204 77.0
Lalb_Chr04g0260471 Lupinus albus HOM05D005935 ORTHO05D007012 7.4e-62 241.1 205 68.3
BolC5t34806H Brassica oleracea HOM05D002110 ORTHO05D007012 9.7e-62 240.7 201 73.1
BcaC05g30089 Brassica carinata HOM05D005935 ORTHO05D007012 1.3e-61 240.4 201 73.6
CANSAT54G1507 Cannabis sativa HOM05D005935 ORTHO05D007012 1.3e-61 240.4 206 75.7
C05p61480 Brassica napus HOM05D002110 ORTHO05D007012 2.2e-61 239.6 201 74.6
COL.COLO4_04140 Corchorus olitorius HOM05D005935 ORTHO05D007012 2.2e-61 239.6 199 75.4
QL01p019294 Quercus lobata HOM05D005935 ORTHO05D007012 2.2e-61 239.6 195 78.5
Sc09g0002670 Simmondsia chinensis HOM05D005935 ORTHO05D007012 2.2e-61 239.6 204 74.5
ECA234G4853 Erigeron canadensis HOM05D005935 ORTHO05D007012 2.8e-61 239.2 203 75.9
Actinidia16851 Actinidia chinensis HOM05D005935 ORTHO05D007012 3.7e-61 238.8 196 78.6
CARHR080230 Cardamine hirsuta HOM05D005935 ORTHO05D007012 4.1e-60 235.3 201 74.6
Potri.013G010300 Populus trichocarpa HOM05D005935 ORTHO05D007012 4.1e-60 235.3 198 76.3
FAN09G4449 Fragaria x ananassa HOM05D005935 ORTHO05D007012 6.9e-60 234.6 146 82.9
Sp3g04650 Schrenkiella parvula HOM05D005935 ORTHO05D007012 1.2e-59 233.8 201 73.1
THA.LOC104802776 Tarenaya hassleriana HOM05D005935 ORTHO05D007012 3.4e-59 232.3 201 73.6
PSO478G5244 Papaver somniferum HOM05D005935 ORTHO05D007012 5.9e-59 231.5 197 75.6
HPP92_015241 Vanilla planifolia HOM05D005935 ORTHO05D007012 1.0e-58 230.7 195 76.9
Carub.0003s0513 Capsella rubella HOM05D005935 ORTHO05D007012 1.3e-58 230.3 201 72.1
Psat3g013040 Pisum sativum HOM05D005935 ORTHO05D007012 2.2e-58 229.6 199 71.4
AT3G05760 Arabidopsis thaliana HOM05D005935 ORTHO05D007012 2.9e-58 229.2 201 72.6
TPR.G1633 Trifolium pratense HOM05D005935 ORTHO05D007012 8.5e-58 227.6 200 73.0
Nitab4.5_0000155g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 1.4e-57 226.9 204 74.0
AL3G16500 Arabidopsis lyrata HOM05D005935 ORTHO05D007012 7.2e-57 224.6 201 70.6
Duzib128G1094 Durio zibethinus HOM05D005935 ORTHO05D007012 7.2e-57 224.6 150 76.7
BcaC05g29782 Brassica carinata HOM05D005935 ORTHO05D007012 1.2e-56 223.8 201 69.7
DCAR_005416 Daucus carota HOM05D005935 ORTHO05D007012 2.1e-56 223.0 170 82.4
Nitab4.5_0013342g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004269 1.0e-55 220.7 208 72.6
AagrBONN_evm.TU.Sc2ySwM_344.1201 Anthoceros agrestis HOM05D005935 ORTHO05D007012 5.2e-55 218.4 149 74.5
CSS0047945 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 6.7e-55 218.0 168 81.5
Aa31LG5G16170 Aethionema arabicum HOM05D005935 ORTHO05D007012 3.7e-53 212.2 213 58.2
AagrBONN_evm.TU.Sc2ySwM_228.1845 Anthoceros agrestis HOM05D005935 ORTHO05D007012 2.4e-52 209.5 145 73.1
Thhalv10022198m.g Eutrema salsugineum HOM05D005935 ORTHO05D007012 2.4e-52 209.5 279 55.2
AUR62005273 Chenopodium quinoa HOM05D005935 ORTHO05D007012 1.6e-51 206.8 198 72.2
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 4.5e-51 205.3 132 78.8
SMO201G0167 Selaginella moellendorffii HOM05D005935 ORTHO05D007012 2.9e-50 202.6 204 61.8
Hund07136 Selenicereus undatus HOM05D005935 ORTHO05D007012 6.5e-50 201.4 295 52.9
Nitab4.5_0000368g0260 Nicotiana tabacum HOM05D005935 ORTHO05D007012 8.0e-48 194.5 204 60.3
Rhsim11G0094200 Rhododendron simsii HOM05D005935 ORTHO05D007012 1.8e-47 193.4 209 57.4
CSS0009551 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 8.8e-47 191.0 197 68.0
Hund21747 Selenicereus undatus HOM05D005935 ORTHO05D007012 8.8e-47 191.0 204 65.2
Lj5A336T44 Lonicera japonica HOM05D005935 ORTHO05D007012 1.7e-45 186.8 109 83.5
Pp3c12_7700 Physcomitrium patens HOM05D005935 ORTHO05D007012 3.1e-44 182.6 162 74.7
CSS0024691 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 5.2e-39 165.2 143 67.1
Oeu013219.2 Olea europaea HOM05D005935 ORTHO05D007012 8.8e-39 164.5 224 60.7
RcHm_v2.0_Chr7g0179971 Rosa chinensis HOM05D005935 ORTHO05D007012 2.2e-37 159.8 144 61.1
CSS0034550 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 4.5e-35 152.1 209 60.8
Nitab4.5_0007747g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 2.9e-34 149.4 123 82.9
CSS0031844 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.2e-32 144.1 122 67.2
Sabra13G0008800 Salix brachista HOM05D005935 ORTHO05D007012 1.6e-32 143.7 222 45.9
CBR_g38440 Chara braunii HOM05D005935 ORTHO05D007012 1.5e-30 137.1 201 44.3
Cre07.g341650 Chlamydomonas reinhardtii HOM05D005935 ORTHO05D007012 5.7e-30 135.2 230 48.3
Actinidia35528 Actinidia chinensis HOM05D005935 ORTHO05D007012 2.0e-27 126.7 285 44.9
FAN04G2955 Fragaria x ananassa HOM05D005935 ORTHO05D007012 6.1e-24 115.2 155 46.5
MCO03G264 Micromonas commoda HOM05D005935 ORTHO05D007012 9.8e-22 107.8 213 44.6
PRCOL_00000245 Prasinoderma coloniale HOM05D005935 ORTHO05D007012 1.5e-17 94.0 213 38.0
Zm00001eb307900 Zea mays HOM05D005935 ORTHO05D007012 5.6e-17 92.0 95 73.7
Zm00001eb114570 Zea mays HOM05D005935 ORTHO05D007012 1.4e-15 87.4 90 74.4
Zm00001eb180860 Zea mays HOM05D005935 ORTHO05D007012 1.3e-10 70.9 46 78.3
Cfa024511 Carpinus fangiana HOM05D005935 ORTHO05D007012 1.1e-09 67.8 159 29.6


User provided reference genes

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