Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0767G076 Amborella trichopoda HOM05D000688 ORTHO05D018281 2.0e-55 218.8 107 100.0
ATR0609G097 Amborella trichopoda HOM05D000688 ORTHO05D003888 7.6e-26 120.6 72 83.3
arahy.Tifrunner.gnm1.ann1.RHTP8A Arachis hypogaea HOM05D000688 ORTHO05D003888 1.1e-21 106.7 72 72.2
arahy.Tifrunner.gnm1.ann1.W6893Z Arachis hypogaea HOM05D000688 ORTHO05D003888 1.1e-21 106.7 72 72.2
Oeu006782.2 Olea europaea HOM05D000688 ORTHO05D003888 1.5e-21 106.3 72 72.2
Ciclev10000078m.g Citrus clementina HOM05D000688 ORTHO05D003888 5.6e-21 104.4 72 69.4
Dinv01617 Davidia involucrata HOM05D000688 ORTHO05D003888 5.6e-21 104.4 72 69.4
CSS0019460 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D003888 7.4e-21 104.0 72 69.4
MSTRG.20498 Avicennia marina HOM05D000688 ORTHO05D003888 9.6e-21 103.6 72 69.4
Lj5g0025980 Lotus japonicus HOM05D000688 ORTHO05D003888 9.6e-21 103.6 72 70.8
Lalb_Chr01g0000861 Lupinus albus HOM05D000688 ORTHO05D003888 9.6e-21 103.6 72 69.4
CDE04G0541 Ceratophyllum demersum HOM05D000688 ORTHO05D003888 1.3e-20 103.2 65 75.4
Glyma.01G006500 Glycine max HOM05D000688 ORTHO05D003888 1.3e-20 103.2 72 70.8
Glyma.07G125300 Glycine max HOM05D000688 ORTHO05D003888 1.3e-20 103.2 72 70.8
Phvul.004G175000 Phaseolus vulgaris HOM05D000688 ORTHO05D003888 1.3e-20 103.2 72 70.8
VMungo0464G0248 Vigna mungo HOM05D000688 ORTHO05D003888 1.3e-20 103.2 72 70.8
Hma1.2p1_1730F.1_g299620 Hydrangea macrophylla HOM05D000688 ORTHO05D003888 1.6e-20 102.8 72 68.1
PGR031G2689 Punica granatum HOM05D000688 ORTHO05D003888 1.6e-20 102.8 72 70.8
Carub.0008s0305 Capsella rubella HOM05D000688 ORTHO05D003888 2.1e-20 102.4 72 69.4
Ca_23464_v3 Cicer arietinum L. HOM05D000688 ORTHO05D003888 2.1e-20 102.4 72 69.4
Cc04_g08900 Coffea canephora HOM05D000688 ORTHO05D003888 2.1e-20 102.4 72 69.4
Eucgr.A00794 Eucalyptus grandis HOM05D000688 ORTHO05D003888 2.1e-20 102.4 60 80.0
Nn2g14058 Nelumbo nucifera HOM05D000688 ORTHO05D003888 2.1e-20 102.4 72 68.1
Rhsim11G0122400 Rhododendron simsii HOM05D000688 ORTHO05D003888 2.1e-20 102.4 72 68.1
Solyc10g078860.2 Solanum lycopersicum HOM05D000688 ORTHO05D003888 2.1e-20 102.4 72 69.4
Sopen10g029490 Solanum pennellii HOM05D000688 ORTHO05D003888 2.1e-20 102.4 72 69.4
PGSC0003DMG400011444 Solanum tuberosum HOM05D000688 ORTHO05D003888 2.1e-20 102.4 72 69.4
SGA_v2.0_scaffold195G40824 Striga asiatica HOM05D000688 ORTHO05D003888 2.1e-20 102.4 71 71.8
SGA_v2.0_scaffold308G48121 Striga asiatica HOM05D000688 ORTHO05D018281 2.1e-20 102.4 71 71.8
THA.LOC104811399 Tarenaya hassleriana HOM05D000688 ORTHO05D003888 2.1e-20 102.4 72 69.4
CANSAT21G2099 Cannabis sativa HOM05D000688 ORTHO05D003888 2.8e-20 102.1 72 68.1
Cpa.g.sc17.35 Carica papaya HOM05D000688 ORTHO05D003888 2.8e-20 102.1 72 68.1
CiPaw.14G009900 Carya illinoinensis HOM05D000688 ORTHO05D003888 2.8e-20 102.1 72 68.1
Lj3C924G6 Lonicera japonica HOM05D000688 ORTHO05D003888 2.8e-20 102.1 72 68.1
Medtr8g023445 Medicago truncatula HOM05D000688 ORTHO05D003888 2.8e-20 102.1 72 69.4
Solyc10g078880.2 Solanum lycopersicum HOM05D000688 ORTHO05D003888 2.8e-20 102.1 72 69.4
Sopen10g029500 Solanum pennellii HOM05D000688 ORTHO05D003888 2.8e-20 102.1 72 69.4
PGSC0003DMG400011445 Solanum tuberosum HOM05D000688 ORTHO05D003888 2.8e-20 102.1 72 69.4
Atru.chr4.3095 Acer truncatum HOM05D000688 ORTHO05D003888 3.7e-20 101.7 73 69.9
HPP92_018385 Vanilla planifolia HOM05D000688 ORTHO05D003888 3.7e-20 101.7 72 68.1
AT5G45140 Arabidopsis thaliana HOM05D000688 ORTHO05D003888 4.8e-20 101.3 72 68.1
DCAR_012513 Daucus carota HOM05D000688 ORTHO05D003888 4.8e-20 101.3 72 68.1
DCAR_022371 Daucus carota HOM05D000688 ORTHO05D003888 4.8e-20 101.3 72 68.1
Potri.015G003000 Populus trichocarpa HOM05D000688 ORTHO05D003888 4.8e-20 101.3 72 69.4
PSO339G4862 Papaver somniferum HOM05D000688 ORTHO05D003888 6.2e-20 100.9 72 66.7
PSO384G1949 Papaver somniferum HOM05D000688 ORTHO05D003888 6.2e-20 100.9 72 66.7
Pp3c18_11070 Physcomitrium patens HOM05D000688 ORTHO05D003888 6.2e-20 100.9 72 66.7
SMO171G0074 Selaginella moellendorffii HOM05D000688 ORTHO05D003888 6.2e-20 100.9 72 66.7
Ah.01g004280 Amaranthus hybridus HOM05D000688 ORTHO05D003888 8.1e-20 100.5 62 75.8
Psat4g164800 Pisum sativum HOM05D000688 ORTHO05D003888 8.1e-20 100.5 72 68.1
QL05p086812 Quercus lobata HOM05D000688 ORTHO05D003888 8.1e-20 100.5 72 68.1
QL05p087326 Quercus lobata HOM05D000688 ORTHO05D003888 8.1e-20 100.5 72 68.1
TAR371G0646 Trochodendron aralioides HOM05D000688 ORTHO05D003888 8.1e-20 100.5 73 67.1
GSVIVG01036597001 Vitis vinifera HOM05D000688 ORTHO05D003888 8.1e-20 100.5 72 66.7
Aqoxy3G02794 Aquilegia oxysepala HOM05D000688 ORTHO05D003888 1.1e-19 100.1 72 68.1
Aqoxy4G01311 Aquilegia oxysepala HOM05D000688 ORTHO05D003888 1.1e-19 100.1 72 68.1
MELO3C024455.2 Cucumis melo HOM05D000688 ORTHO05D003888 1.1e-19 100.1 72 66.7
CsaV3_7G035430 Cucumis sativus L. HOM05D000688 ORTHO05D003888 1.1e-19 100.1 72 66.7
SGA_v2.0_scaffold375G50252 Striga asiatica HOM05D000688 ORTHO05D003888 1.1e-19 100.1 72 68.1
CAN.G11758.1 Capsicum annuum HOM05D000688 ORTHO05D003888 1.4e-19 99.8 72 68.1
FvH4_7g03930 Fragaria vesca HOM05D000688 ORTHO05D003888 1.4e-19 99.8 72 66.7
FAN01G1250 Fragaria x ananassa HOM05D000688 ORTHO05D003888 1.4e-19 99.8 72 66.7
FAN03G3082 Fragaria x ananassa HOM05D000688 ORTHO05D003888 1.4e-19 99.8 72 66.7
FAN06G4099 Fragaria x ananassa HOM05D000688 ORTHO05D003888 1.4e-19 99.8 72 66.7
Peaxi162Scf00003g04511 Petunia axillaris HOM05D000688 ORTHO05D003888 1.4e-19 99.8 72 66.7
Prupe.2G044100 Prunus persica HOM05D000688 ORTHO05D003888 1.4e-19 99.8 72 68.1
RcHm_v2.0_Chr1g0327591 Rosa chinensis HOM05D000688 ORTHO05D003888 1.4e-19 99.8 72 66.7
TPR.G29748 Trifolium pratense HOM05D000688 ORTHO05D003888 1.4e-19 99.8 72 66.7
Migut.B01180 Erythranthe guttata HOM05D000688 ORTHO05D003888 1.8e-19 99.4 72 68.1
Nitab4.5_0000105g0140 Nicotiana tabacum HOM05D000688 ORTHO05D003888 1.8e-19 99.4 72 68.1
Nitab4.5_0004643g0010 Nicotiana tabacum HOM05D000688 ORTHO05D003888 1.8e-19 99.4 72 68.1
SalBow4G1891 Salvia bowleyana HOM05D000688 ORTHO05D003888 1.8e-19 99.4 62 74.2
SalBow5G4138 Salvia bowleyana HOM05D000688 ORTHO05D003888 1.8e-19 99.4 65 70.8
Sed0017010 Sechium edule HOM05D000688 ORTHO05D003888 1.8e-19 99.4 72 66.7
COL.COLO4_19613 Corchorus olitorius HOM05D000688 ORTHO05D003888 2.4e-19 99.0 76 65.8
PSO478G2833 Papaver somniferum HOM05D000688 ORTHO05D003888 2.4e-19 99.0 72 65.3
Peaxi162Scf01517g00143 Petunia axillaris HOM05D000688 ORTHO05D003888 2.4e-19 99.0 72 66.7
Thecc.05G157400 Theobroma cacao HOM05D000688 ORTHO05D003888 3.1e-19 98.6 73 69.9
vmacro01621 Vaccinium macrocarpon HOM05D000688 ORTHO05D003888 3.1e-19 98.6 72 65.3
Aqoxy6G00568 Aquilegia oxysepala HOM05D000688 ORTHO05D003888 4.0e-19 98.2 72 66.7
AUR62013825 Chenopodium quinoa HOM05D000688 ORTHO05D003888 4.0e-19 98.2 62 71.0
AUR62036901 Chenopodium quinoa HOM05D000688 ORTHO05D003888 4.0e-19 98.2 62 71.0
Duzib106G0735 Durio zibethinus HOM05D000688 ORTHO05D003888 4.0e-19 98.2 72 66.7
Thecc.10G140700 Theobroma cacao HOM05D000688 ORTHO05D003888 4.0e-19 98.2 72 66.7
TPR.G26445 Trifolium pratense HOM05D000688 ORTHO05D003888 4.0e-19 98.2 72 66.7
Migut.B01181 Erythranthe guttata HOM05D000688 ORTHO05D003888 5.3e-19 97.8 72 66.7
AagrBONN_evm.TU.Sc2ySwM_344.1343 Anthoceros agrestis HOM05D000688 ORTHO05D003888 6.9e-19 97.4 72 65.3
CBR_g48573 Chara braunii HOM05D000688 ORTHO05D003888 6.9e-19 97.4 72 63.9
ECA236G1694 Erigeron canadensis HOM05D000688 ORTHO05D003888 6.9e-19 97.4 67 71.6
Os03g0403100 Oryza sativa ssp. japonica HOM05D000688 ORTHO05D003888 6.9e-19 97.4 72 66.7
Sc14g0004780 Simmondsia chinensis HOM05D000688 ORTHO05D003888 6.9e-19 97.4 72 63.9
TAR376G0407 Trochodendron aralioides HOM05D000688 ORTHO05D003888 6.9e-19 97.4 75 65.3
Atru.chr12.1245 Acer truncatum HOM05D000688 ORTHO05D003888 9.0e-19 97.1 72 65.3
Gohir.A05G399000 Gossypium hirsutum HOM05D000688 ORTHO05D003888 9.0e-19 97.1 72 65.3
Gohir.D04G016900 Gossypium hirsutum HOM05D000688 ORTHO05D003888 9.0e-19 97.1 72 65.3
Mapoly0097s0027 Marchantia polymorpha HOM05D000688 ORTHO05D003888 9.0e-19 97.1 72 63.9
Aa31LG9G7980 Aethionema arabicum HOM05D000688 ORTHO05D003888 1.5e-18 96.3 73 67.1
MCO04G463 Micromonas commoda HOM05D000688 ORTHO05D003888 2.0e-18 95.9 72 63.9
AL8G14060 Arabidopsis lyrata HOM05D000688 ORTHO05D003888 2.6e-18 95.5 72 66.7
MD14G1029000 Malus domestica HOM05D000688 ORTHO05D003888 3.4e-18 95.1 72 65.3
TWI63G1180 Tripterygium wilfordii HOM05D000688 ORTHO05D003888 3.4e-18 95.1 71 63.4
Lsat_1_v5_gn_7_12221 Lactuca sativa HOM05D000688 ORTHO05D003888 4.5e-18 94.7 67 70.1
Manes.04G155900 Manihot esculenta HOM05D000688 ORTHO05D003888 4.5e-18 94.7 73 65.8
Ah.01g015190 Amaranthus hybridus HOM05D000688 ORTHO05D018281 5.8e-18 94.4 64 67.2
BcaB07g30474 Brassica carinata HOM05D000688 ORTHO05D003888 5.8e-18 94.4 72 65.3
CAN.G960.25 Capsicum annuum HOM05D000688 ORTHO05D003888 5.8e-18 94.4 62 71.0
unitig_22.g5333 Utricularia gibba HOM05D000688 ORTHO05D003888 5.8e-18 94.4 65 66.2
BcaC06g34487 Brassica carinata HOM05D000688 ORTHO05D003888 7.6e-18 94.0 72 65.3
A06p46750 Brassica napus HOM05D000688 ORTHO05D003888 7.6e-18 94.0 72 65.3
C07p27930 Brassica napus HOM05D000688 ORTHO05D003888 7.6e-18 94.0 72 65.3
BraA06t27547Z Brassica rapa HOM05D000688 ORTHO05D003888 7.6e-18 94.0 72 65.3
Thhalv10000748m.g Eutrema salsugineum HOM05D000688 ORTHO05D003888 7.6e-18 94.0 72 65.3
Cre12.g542800 Chlamydomonas reinhardtii HOM05D000688 ORTHO05D003888 9.9e-18 93.6 72 63.9
Zm00001eb269100 Zea mays HOM05D000688 ORTHO05D003888 1.3e-17 93.2 71 63.4
BolC2t10650H Brassica oleracea HOM05D000688 ORTHO05D003888 1.7e-17 92.8 72 65.3
Sp2g09970 Schrenkiella parvula HOM05D000688 ORTHO05D003888 1.7e-17 92.8 72 63.9
CARHR110560 Cardamine hirsuta HOM05D000688 ORTHO05D003888 2.2e-17 92.4 72 63.9
Lj3g0004991 Lotus japonicus HOM05D000688 ORTHO05D003888 2.2e-17 92.4 65 69.2
CAN.G960.6 Capsicum annuum HOM05D000688 ORTHO05D003888 2.9e-17 92.0 57 75.4
Gorai.012G019600 Gossypium raimondii HOM05D000688 ORTHO05D003888 2.9e-17 92.0 73 64.4
HanXRQChr04g0119821 Helianthus annuus HOM05D000688 ORTHO05D003888 3.8e-17 91.7 67 67.2
EL10Ac1g01996 Beta vulgaris HOM05D000688 ORTHO05D003888 4.9e-17 91.3 79 58.2
C02p45870 Brassica napus HOM05D000688 ORTHO05D003888 6.4e-17 90.9 65 69.2
BcaC03g16725 Brassica carinata HOM05D000688 ORTHO05D003888 1.1e-16 90.1 72 63.9
Gohir.A11G004801 Gossypium hirsutum HOM05D000688 ORTHO05D003888 1.1e-16 90.1 100 52.0
TPR.G16363 Trifolium pratense HOM05D000688 ORTHO05D003888 1.4e-16 89.7 72 61.1
A02p28860 Brassica napus HOM05D000688 ORTHO05D003888 1.9e-16 89.4 65 67.7
Gohir.D11G004000 Gossypium hirsutum HOM05D000688 ORTHO05D003888 2.4e-16 89.0 71 64.8
HanXRQChr06g0183351 Helianthus annuus HOM05D000688 ORTHO05D003888 3.2e-16 88.6 67 67.2
Cfa026358 Carpinus fangiana HOM05D000688 ORTHO05D003888 7.1e-16 87.4 74 58.1
FvH4_5g31720 Fragaria vesca HOM05D000688 ORTHO05D003888 7.1e-16 87.4 88 54.5
PRCOL_00004652 Prasinoderma coloniale HOM05D000688 ORTHO05D003888 1.2e-15 86.7 72 61.1
Gorai.007G005200 Gossypium raimondii HOM05D000688 ORTHO05D003888 1.6e-15 86.3 71 63.4
CAN.G960.33 Capsicum annuum HOM05D000688 ORTHO05D018281 2.7e-15 85.5 70 64.3
CARHR177390 Cardamine hirsuta HOM05D000688 ORTHO05D003888 3.5e-15 85.1 65 66.2
QL05p087243 Quercus lobata HOM05D000041 ORTHO05D000061 3.5e-15 85.1 58 75.9
Haze_02986 Corylus avellana HOM05D000688 ORTHO05D003888 4.6e-15 84.7 72 61.1
BcaNung00311 Brassica carinata HOM05D000688 ORTHO05D003888 1.0e-14 83.6 72 59.7
FAN18G2226 Fragaria x ananassa HOM05D000688 ORTHO05D003888 1.8e-14 82.8 88 53.4
COL.COLO4_05983 Corchorus olitorius HOM05D000688 ORTHO05D003888 6.7e-14 80.9 52 75.0
RcHm_v2.0_Chr7g0227611 Rosa chinensis HOM05D000688 ORTHO05D003888 1.1e-13 80.1 56 71.4
Haze_26445 Corylus avellana HOM05D000688 ORTHO05D003888 2.5e-13 79.0 67 53.7
CsaV3_1G045600 Cucumis sativus L. HOM05D000688 ORTHO05D018281 3.7e-12 75.1 51 70.6
CsaV3_UNG004070 Cucumis sativus L. HOM05D000688 ORTHO05D018281 3.7e-12 75.1 51 70.6
FAN08G2264 Fragaria x ananassa HOM05D000688 ORTHO05D003888 1.8e-11 72.8 38 89.5
Peaxi162Scf00304g00112 Petunia axillaris HOM05D000688 ORTHO05D003888 2.6e-10 68.9 72 54.2
CAN.G960.23 Capsicum annuum HOM05D000688 ORTHO05D018281 1.7e-09 66.2 46 67.4
Cpa.g.sc169.36 Carica papaya HOM05D000688 ORTHO05D005697 1.0e-06 57.0 73 42.5
CBR_g45284 Chara braunii HOM05D000688 ORTHO05D003891 1.8e-06 56.2 49 49.0
CBR_g49614 Chara braunii HOM05D000688 ORTHO05D003891 1.8e-06 56.2 49 49.0
PRCOL_00001694 Prasinoderma coloniale HOM05D000688 ORTHO05D003891 2.3e-06 55.8 49 49.0
GSVIVG01036642001 Vitis vinifera HOM05D000688 ORTHO05D005697 2.3e-06 55.8 72 38.9
CBR_g59394 Chara braunii HOM05D000688 ORTHO05D003891 3.0e-06 55.5 49 51.0
Cc11_g03150 Coffea canephora HOM05D000688 ORTHO05D005697 3.0e-06 55.5 68 42.6
DCAR_019382 Daucus carota HOM05D000688 ORTHO05D005697 3.0e-06 55.5 59 49.2
Prupe.1G574600 Prunus persica HOM05D000688 ORTHO05D005697 3.0e-06 55.5 74 44.6
AUR62015017 Chenopodium quinoa HOM05D000688 ORTHO05D005697 3.9e-06 55.1 73 37.0
AUR62029096 Chenopodium quinoa HOM05D000688 ORTHO05D005697 3.9e-06 55.1 73 37.0
CSS0003979 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D003891 5.1e-06 54.7 49 49.0
Atru.chr12.1303 Acer truncatum HOM05D000688 ORTHO05D005697 6.7e-06 54.3 72 38.9
MSTRG.23938 Avicennia marina HOM05D000688 ORTHO05D005697 8.7e-06 53.9 73 38.4
Dinv32011 Davidia involucrata HOM05D000688 ORTHO05D005697 8.7e-06 53.9 74 41.9
Lalb_Chr03g0032171 Lupinus albus HOM05D000688 ORTHO05D005697 8.7e-06 53.9 74 40.5
Potri.001G030750 Populus trichocarpa HOM05D000688 ORTHO05D005697 8.7e-06 53.9 74 43.2
TPR.G15003 Trifolium pratense HOM05D000688 ORTHO05D003891 8.7e-06 53.9 49 46.9


User provided reference genes

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