Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0626G320 Amborella trichopoda HOM05D007201 ORTHO05D009122 1.6e-233 812.4 402 100.0
TAR626G0209 Trochodendron aralioides HOM05D007201 ORTHO05D009122 1.8e-80 303.9 429 44.8
QL11p005700 Quercus lobata HOM05D007201 ORTHO05D009122 2.5e-61 240.4 416 40.9
Cfa012872 Carpinus fangiana HOM05D007201 ORTHO05D009122 5.5e-61 239.2 429 39.4
Rhsim03G0269700 Rhododendron simsii HOM05D007201 ORTHO05D009122 1.6e-60 237.7 432 38.9
Atru.chr7.298 Acer truncatum HOM05D007201 ORTHO05D009122 4.7e-60 236.1 408 41.4
FvH4_4g00131 Fragaria vesca HOM05D007201 ORTHO05D009122 1.0e-59 235.0 408 39.7
Thecc.09G202300 Theobroma cacao HOM05D007201 ORTHO05D009122 8.8e-59 231.9 419 41.1
PSO339G5324 Papaver somniferum HOM05D007201 ORTHO05D009122 1.5e-58 231.1 415 40.0
Ciclev10008517m.g Citrus clementina HOM05D007201 ORTHO05D009122 2.0e-58 230.7 404 39.9
Haze_21242 Corylus avellana HOM05D007201 ORTHO05D009122 2.8e-57 226.9 415 38.3
Manes.02G222200 Manihot esculenta HOM05D007201 ORTHO05D009122 3.7e-57 226.5 410 40.5
MD04G1000600 Malus domestica HOM05D007201 ORTHO05D009122 6.3e-57 225.7 438 38.4
HanXRQChr10g0309261 Helianthus annuus HOM05D007201 ORTHO05D009122 8.2e-57 225.3 331 43.2
Nn8g41282 Nelumbo nucifera HOM05D007201 ORTHO05D009122 2.4e-56 223.8 361 42.4
CSS0027843 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 3.1e-56 223.4 418 38.8
CsaV3_1G044360 Cucumis sativus L. HOM05D007201 ORTHO05D009122 5.3e-56 222.6 410 40.5
FAN12G0236 Fragaria x ananassa HOM05D007201 ORTHO05D009122 5.3e-56 222.6 408 38.5
Prupe.1G000600 Prunus persica HOM05D007201 ORTHO05D009122 1.6e-55 221.1 427 37.5
RcHm_v2.0_Chr4g0384751 Rosa chinensis HOM05D007201 ORTHO05D009122 1.0e-54 218.4 416 37.3
MELO3C010035.2 Cucumis melo HOM05D007201 ORTHO05D009122 1.5e-53 214.5 412 39.8
Actinidia03796 Actinidia chinensis HOM05D007201 ORTHO05D009122 3.2e-53 213.4 434 37.8
Aqoxy7G02518 Aquilegia oxysepala HOM05D007201 ORTHO05D009122 4.7e-52 209.5 410 38.3
Gorai.012G009900 Gossypium raimondii HOM05D007201 ORTHO05D009122 4.7e-52 209.5 423 38.8
CiPaw.15G000100 Carya illinoinensis HOM05D007201 ORTHO05D009122 1.4e-51 208.0 427 35.8
Cc06_g23490 Coffea canephora HOM05D007201 ORTHO05D009122 2.3e-51 207.2 464 35.8
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 2.3e-51 207.2 433 36.5
Potri.006G081100 Populus trichocarpa HOM05D007201 ORTHO05D009122 1.2e-50 204.9 449 35.9
Gohir.D04G008200 Gossypium hirsutum HOM05D007201 ORTHO05D009122 2.6e-50 203.8 422 37.4
Sc10g0006090 Simmondsia chinensis HOM05D007201 ORTHO05D009122 3.3e-50 203.4 425 35.8
SEGI_05170 Sequoiadendron giganteum HOM05D007201 ORTHO05D009122 7.5e-50 202.2 443 37.5
SHI24431 Sapria himalayana HOM05D007201 ORTHO05D009122 2.8e-49 200.3 294 43.2
Sabra06G0061200 Salix brachista HOM05D007201 ORTHO05D009122 3.7e-49 199.9 458 35.4
HPP92_017373 Vanilla planifolia HOM05D007201 ORTHO05D009122 3.7e-49 199.9 409 38.1
Lju50A20G7 Lonicera japonica HOM05D007201 ORTHO05D009122 4.8e-49 199.5 444 36.7
Aqoxy37s001 Aquilegia oxysepala HOM05D007201 ORTHO05D009122 5.3e-48 196.1 309 42.1
GSVIVG01034266001 Vitis vinifera HOM05D007201 ORTHO05D009122 7.7e-47 192.2 412 35.9
COL.COLO4_09000 Corchorus olitorius HOM05D007201 ORTHO05D009122 1.7e-46 191.0 426 36.6
CSS0027553 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 5.0e-46 189.5 250 48.4
Psat7g169960 Pisum sativum HOM05D007201 ORTHO05D009122 6.5e-46 189.1 303 42.6
FAN12G1512 Fragaria x ananassa HOM05D007201 ORTHO05D009122 8.5e-46 188.7 216 49.1
Peaxi162Scf00047g02450 Petunia axillaris HOM05D007201 ORTHO05D009122 8.5e-46 188.7 412 36.9
PGR142G4385 Punica granatum HOM05D007201 ORTHO05D009122 1.1e-45 188.3 399 37.3
Sp5g30480 Schrenkiella parvula HOM05D007201 ORTHO05D009122 3.2e-45 186.8 241 45.2
CSS0037159 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 4.2e-45 186.4 313 41.9
Hund22525 Selenicereus undatus HOM05D007201 ORTHO05D009122 9.4e-45 185.3 398 36.4
PGSC0003DMG400002893 Solanum tuberosum HOM05D007201 ORTHO05D009122 1.6e-44 184.5 439 34.2
Carub.0002s2218 Capsella rubella HOM05D007201 ORTHO05D009122 2.1e-44 184.1 417 36.2
ECA240G0013 Erigeron canadensis HOM05D006383 ORTHO05D007815 2.7e-44 183.7 428 35.3
Lsat_1_v5_gn_5_80700 Lactuca sativa HOM05D007201 ORTHO05D009122 2.7e-44 183.7 413 36.6
AL2G35270 Arabidopsis lyrata HOM05D007201 ORTHO05D009122 8.0e-44 182.2 254 45.3
vmacro22702 Vaccinium macrocarpon HOM05D007201 ORTHO05D009122 4.0e-43 179.9 508 32.9
ECA234G1264 Erigeron canadensis HOM05D007201 ORTHO05D009122 6.8e-43 179.1 425 33.9
CDE04G0352 Ceratophyllum demersum HOM05D007201 ORTHO05D009122 2.0e-42 177.6 367 40.1
Phvul.011G018600 Phaseolus vulgaris HOM05D007201 ORTHO05D009122 3.4e-42 176.8 409 35.9
VMungo1127G0228 Vigna mungo HOM05D007201 ORTHO05D009122 9.8e-42 175.3 407 34.9
Lj3g0009807 Lotus japonicus HOM05D007201 ORTHO05D009122 1.7e-41 174.5 405 35.8
Solyc12g009390.2 Solanum lycopersicum HOM05D007201 ORTHO05D009122 3.7e-41 173.3 443 33.0
SGA_v2.0_scaffold21G09583 Striga asiatica HOM05D007201 ORTHO05D009122 4.8e-41 172.9 369 37.7
AT1G75340 Arabidopsis thaliana HOM05D007201 ORTHO05D009122 1.4e-40 171.4 253 41.1
Eucgr.C00055 Eucalyptus grandis HOM05D007201 ORTHO05D009122 1.8e-40 171.0 419 35.1
Thhalv10018711m.g Eutrema salsugineum HOM05D007201 ORTHO05D009122 4.1e-40 169.9 420 34.5
CANSAT25G2467 Cannabis sativa HOM05D007201 ORTHO05D009122 5.4e-40 169.5 238 43.3
Cpa.g.sc46.114 Carica papaya HOM05D007201 ORTHO05D009122 3.5e-39 166.8 439 33.9
Glyma.11G109000 Glycine max HOM05D007201 ORTHO05D009122 1.3e-38 164.9 424 34.2
Dinv26498 Davidia involucrata HOM05D007201 ORTHO05D009122 1.7e-38 164.5 424 33.7
CARHR068690 Cardamine hirsuta HOM05D007201 ORTHO05D009122 2.3e-38 164.1 260 40.4
Sopen12g004380 Solanum pennellii HOM05D007201 ORTHO05D009122 2.3e-38 164.1 450 31.3
THA.LOC104809224 Tarenaya hassleriana HOM05D007201 ORTHO05D009122 2.9e-38 163.7 423 33.3
C06p49330 Brassica napus HOM05D007201 ORTHO05D009122 8.6e-38 162.2 420 32.9
BraA07t31630Z Brassica rapa HOM05D007201 ORTHO05D009122 1.1e-37 161.8 438 32.2
arahy.Tifrunner.gnm1.ann1.X4HTYC Arachis hypogaea HOM05D007201 ORTHO05D009122 2.5e-37 160.6 436 33.7
BcaC08g47362 Brassica carinata HOM05D007201 ORTHO05D009122 2.5e-37 160.6 427 33.0
Glyma.12G016400 Glycine max HOM05D007201 ORTHO05D009122 2.5e-37 160.6 422 32.7
Aa31LG4G5550 Aethionema arabicum HOM05D007201 ORTHO05D009122 3.2e-37 160.2 351 36.2
arahy.Tifrunner.gnm1.ann1.G7GJBK Arachis hypogaea HOM05D007201 ORTHO05D009122 4.2e-37 159.8 430 34.2
EL10Ac2g03602 Beta vulgaris HOM05D007201 ORTHO05D009122 4.2e-37 159.8 322 38.5
CAN.G1591.3 Capsicum annuum HOM05D007201 ORTHO05D009122 4.2e-37 159.8 259 41.3
Lalb_Chr19g0140031 Lupinus albus HOM05D007201 ORTHO05D009122 7.2e-37 159.1 243 43.2
FAN22G0406 Fragaria x ananassa HOM05D007201 ORTHO05D009122 2.8e-36 157.1 400 35.5
Medtr4g078160 Medicago truncatula HOM05D007201 ORTHO05D009122 3.6e-36 156.8 430 32.1
TPR.G28027 Trifolium pratense HOM05D007201 ORTHO05D009122 3.6e-36 156.8 436 31.2
A07p40900 Brassica napus HOM05D007201 ORTHO05D009122 6.1e-36 156.0 419 33.4
BolC6t39968H Brassica oleracea HOM05D007201 ORTHO05D009122 1.8e-35 154.5 444 31.8
Zm00001eb227240 Zea mays HOM05D007201 ORTHO05D009122 1.8e-35 154.5 414 32.1
Os06g0704300 Oryza sativa ssp. japonica HOM05D007201 ORTHO05D009122 5.2e-35 152.9 412 32.8
Nitab4.5_0000073g0490 Nicotiana tabacum HOM05D007201 ORTHO05D009122 7.5e-34 149.1 469 31.1
AUR62027959 Chenopodium quinoa HOM05D007201 ORTHO05D009122 2.8e-33 147.1 200 44.0
Pp3c7_12210 Physcomitrium patens HOM05D007201 ORTHO05D009122 5.4e-32 142.9 426 33.1
unitig_8.g3542 Utricularia gibba HOM05D007201 ORTHO05D009122 2.0e-31 141.0 303 35.3
Duzib168G1263 Durio zibethinus HOM05D007201 ORTHO05D009122 9.5e-29 132.1 434 31.3
Nitab4.5_0004827g0030 Nicotiana tabacum HOM05D007201 ORTHO05D009122 6.1e-28 129.4 326 33.1
FAN17G0247 Fragaria x ananassa HOM05D007201 ORTHO05D009122 3.2e-24 117.1 83 66.3
Mapoly0005s0044 Marchantia polymorpha HOM05D007201 ORTHO05D009122 4.1e-24 116.7 428 28.0
Oeu000954.1 Olea europaea HOM05D007201 ORTHO05D009122 1.3e-22 111.7 246 35.4
AagrBONN_evm.TU.Sc2ySwM_117.2509 Anthoceros agrestis HOM05D007201 ORTHO05D009122 4.0e-19 100.1 194 38.1
Migut.L01609 Erythranthe guttata HOM05D007201 ORTHO05D009122 2.0e-18 97.8 315 31.4
CBR_g15955 Chara braunii HOM05D007201 ORTHO05D009122 1.0e-14 85.5 261 30.7
Gohir.A05G407400 Gossypium hirsutum HOM05D007201 ORTHO05D009122 4.3e-13 80.1 238 34.0
ClCG03G010480 Citrullus lanatus HOM05D007201 ORTHO05D009122 3.6e-12 77.0 233 33.5


User provided reference genes

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