Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0626G192 Amborella trichopoda HOM05D005707 ORTHO05D007276 0.0e+00 1907.9 951 100.0
Nn1g03422 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1532.7 954 79.1
TAR626G1120 Trochodendron aralioides HOM05D005707 ORTHO05D007276 0.0e+00 1531.2 957 79.0
MBI16_g36319_MAGBIO Magnolia biondii HOM05D005707 ORTHO05D007276 0.0e+00 1527.7 959 78.9
Nn1g03246 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1506.9 954 78.1
Dinv07863 Davidia involucrata HOM05D005707 ORTHO05D007276 0.0e+00 1506.5 960 77.6
Cfa007084 Carpinus fangiana HOM05D005707 ORTHO05D007276 0.0e+00 1502.3 958 77.7
Gorai.007G166700 Gossypium raimondii HOM05D005707 ORTHO05D007276 0.0e+00 1500.7 957 77.7
Gohir.D11G156360 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1499.2 957 77.6
Haze_03608 Corylus avellana HOM05D005707 ORTHO05D007276 0.0e+00 1498.0 945 78.2
PGR142G3494 Punica granatum HOM05D005707 ORTHO05D007276 0.0e+00 1496.1 951 77.6
Gohir.A11G149550 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1493.0 958 77.5
Prupe.3G200600 Prunus persica HOM05D005707 ORTHO05D007276 0.0e+00 1493.0 948 78.3
Potri.014G165400 Populus trichocarpa HOM05D005707 ORTHO05D007276 0.0e+00 1489.2 959 77.5
GSVIVG01030049001 Vitis vinifera HOM05D005707 ORTHO05D007276 0.0e+00 1485.3 954 77.9
Aqoxy2G03044 Aquilegia oxysepala HOM05D005707 ORTHO05D007276 0.0e+00 1484.5 961 76.6
ClCG02G009340 Citrullus lanatus HOM05D005707 ORTHO05D007276 0.0e+00 1481.8 956 76.5
CiPaw.07G002400 Carya illinoinensis HOM05D005707 ORTHO05D007276 0.0e+00 1481.5 968 77.0
MD17G1113900 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1481.5 949 77.9
Manes.13G062700 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1479.9 954 76.8
Duzib138G1526 Durio zibethinus HOM05D005707 ORTHO05D007276 0.0e+00 1479.5 956 76.6
Sabra14G0126000 Salix brachista HOM05D005707 ORTHO05D007276 0.0e+00 1477.2 958 76.4
Manes.12G065301 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1475.7 960 76.8
Ciclev10018207m.g Citrus clementina HOM05D005707 ORTHO05D007276 0.0e+00 1475.3 938 77.5
MELO3C025972.2 Cucumis melo HOM05D005707 ORTHO05D007276 0.0e+00 1474.9 944 77.2
MD09G1123500 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1474.9 950 77.6
PSO732G0538 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1474.5 941 76.7
CANSAT64G1567 Cannabis sativa HOM05D005707 ORTHO05D007276 0.0e+00 1473.8 957 76.2
CsaV3_6G009510 Cucumis sativus L. HOM05D005707 ORTHO05D007276 0.0e+00 1471.4 943 76.8
FvH4_6g40910 Fragaria vesca HOM05D005707 ORTHO05D007276 0.0e+00 1470.7 943 77.0
Rhsim06G0174400 Rhododendron simsii HOM05D005707 ORTHO05D007276 0.0e+00 1470.3 960 75.9
FAN14G2372 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1469.5 943 76.9
arahy.Tifrunner.gnm1.ann1.T3MKLR Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1469.1 961 75.9
FAN05G2777 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1467.6 943 76.9
CSS0003308 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1465.7 959 76.0
CSS0049316 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1465.7 959 76.0
Actinidia09778 Actinidia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1462.2 959 75.8
Lj1C792T2 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1462.2 952 75.7
Atru.BG.42.p Acer truncatum HOM05D005707 ORTHO05D007276 0.0e+00 1461.8 937 77.4
Eucgr.A01050 Eucalyptus grandis HOM05D005707 ORTHO05D007276 0.0e+00 1461.4 943 76.2
RcHm_v2.0_Chr2g0156491 Rosa chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1461.4 947 76.6
PSO675G5925 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1459.9 943 75.8
FAN02G0692 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1458.7 943 76.4
FAN09G4573 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1457.2 945 76.3
Hma1.2p1_1267F.1_g271460 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1454.1 940 77.0
TWI75G1501 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1452.6 945 76.6
Lj1g0027558 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1451.4 966 74.5
QL06p053011 Quercus lobata HOM05D005707 ORTHO05D007276 0.0e+00 1450.3 968 75.6
Lj8A134G73 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1449.5 956 75.4
TWI18G1214 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1449.5 944 76.1
Ca_27368_v3 Cicer arietinum L. HOM05D005707 ORTHO05D007276 0.0e+00 1447.2 966 74.4
Phvul.010G042100 Phaseolus vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1445.6 963 74.4
arahy.Tifrunner.gnm1.ann1.DQM4AF Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1444.9 995 73.2
Sed0013138 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1443.3 941 75.8
VMungo0331G1616 Vigna mungo HOM05D005707 ORTHO05D007276 0.0e+00 1442.6 963 74.2
Lj6g0020016 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1442.2 967 74.7
Sopen06g023670 Solanum pennellii HOM05D005707 ORTHO05D007276 0.0e+00 1440.2 951 75.1
MSTRG.14925 Avicennia marina HOM05D005707 ORTHO05D007276 0.0e+00 1438.7 958 74.4
Glyma.03G104400 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1438.7 966 74.5
Glyma.07G119500 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1438.3 955 74.9
Nitab4.5_0001082g0050 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1438.3 953 74.9
PGSC0003DMG400026068 Solanum tuberosum HOM05D005707 ORTHO05D007276 0.0e+00 1437.6 953 74.7
HanXRQChr03g0075251 Helianthus annuus HOM05D005707 ORTHO05D007276 0.0e+00 1436.4 942 75.4
Solyc06g065170.4 Solanum lycopersicum HOM05D005707 ORTHO05D007276 0.0e+00 1434.9 951 75.1
CAN.G308.64 Capsicum annuum HOM05D005707 ORTHO05D007276 0.0e+00 1432.9 952 74.1
SEGI_38374 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 0.0e+00 1431.0 957 74.2
Nitab4.5_0000303g0290 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1430.6 953 74.7
Lalb_Chr19g0124221 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1426.8 967 73.7
Oeu040469.1 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1426.8 955 73.4
ECA240G2058 Erigeron canadensis HOM05D005707 ORTHO05D007276 0.0e+00 1426.0 943 74.8
Medtr1g019500 Medicago truncatula HOM05D005707 ORTHO05D007276 0.0e+00 1424.8 971 73.2
TPR.G3804 Trifolium pratense HOM05D005707 ORTHO05D007276 0.0e+00 1424.5 963 73.4
Lsat_1_v5_gn_0_5460 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1423.3 938 75.1
Peaxi162Scf00268g00614 Petunia axillaris HOM05D005707 ORTHO05D007276 0.0e+00 1422.1 949 74.5
Sed0020801 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1420.2 942 74.3
Migut.M00030 Erythranthe guttata HOM05D005707 ORTHO05D007276 0.0e+00 1417.5 960 73.8
Os04g0382700 Oryza sativa ssp. japonica HOM05D005707 ORTHO05D007276 0.0e+00 1414.4 945 73.8
AUR62001346 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1412.5 944 74.0
Lsat_1_v5_gn_9_90020 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1412.5 951 74.2
AUR62025658 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1411.0 943 73.8
Cc07_g12010 Coffea canephora HOM05D005707 ORTHO05D007276 0.0e+00 1403.3 937 73.9
Ah.15g094340 Amaranthus hybridus HOM05D005707 ORTHO05D007276 0.0e+00 1401.7 939 73.6
THA.LOC104808851 Tarenaya hassleriana HOM05D005707 ORTHO05D007276 0.0e+00 1401.0 952 73.2
Sp3g23690 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1400.2 946 72.8
SpUn0142_0010 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1400.2 946 72.8
Zm00001eb420950 Zea mays HOM05D005707 ORTHO05D007276 0.0e+00 1400.2 952 72.2
AL3G42770 Arabidopsis lyrata HOM05D005707 ORTHO05D007276 0.0e+00 1399.4 937 73.3
EL10Ac7g18165 Beta vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1396.7 942 72.6
A07p06540 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1395.9 941 72.9
DCAR_012906 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1394.8 944 74.0
Hund18608 Selenicereus undatus HOM05D005707 ORTHO05D007276 0.0e+00 1394.0 968 70.9
BcaC06g35905 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1392.9 941 72.7
BolC7t41423H Brassica oleracea HOM05D005707 ORTHO05D007276 0.0e+00 1392.9 941 72.7
vmacro12103 Vaccinium macrocarpon HOM05D005707 ORTHO05D007276 0.0e+00 1392.5 960 72.9
BraA07t28449Z Brassica rapa HOM05D005707 ORTHO05D007276 0.0e+00 1391.3 941 72.7
Thhalv10002393m.g Eutrema salsugineum HOM05D005707 ORTHO05D007276 0.0e+00 1391.3 946 72.4
Carub.0003s2668 Capsella rubella HOM05D005707 ORTHO05D007276 0.0e+00 1390.2 937 72.9
C07p09820 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1387.9 941 72.5
AT2G05170 Arabidopsis thaliana HOM05D005707 ORTHO05D007276 0.0e+00 1384.8 937 72.6
CARHR103040 Cardamine hirsuta HOM05D005707 ORTHO05D007276 0.0e+00 1384.8 944 72.2
BcaB06g26833 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1380.9 938 72.4
COL.COLO4_09234 Corchorus olitorius HOM05D005707 ORTHO05D007276 0.0e+00 1363.6 963 71.7
Aa31LG9G17700 Aethionema arabicum HOM05D005707 ORTHO05D007276 0.0e+00 1360.1 959 70.0
SGA_v2.0_scaffold73G24514 Striga asiatica HOM05D005707 ORTHO05D007276 0.0e+00 1350.1 938 71.7
Thecc.01G191800 Theobroma cacao HOM05D005707 ORTHO05D007276 0.0e+00 1311.2 833 78.3
unitig_37.g12597 Utricularia gibba HOM05D005707 ORTHO05D007276 0.0e+00 1303.1 954 68.3
Mapoly0022s0120 Marchantia polymorpha HOM05D005707 ORTHO05D007276 0.0e+00 1263.1 996 63.0
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1243.8 937 68.3
AagrBONN_evm.TU.Sc2ySwM_344.1573 Anthoceros agrestis HOM05D005707 ORTHO05D007276 0.0e+00 1239.9 956 64.1
DCAR_028089 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1230.3 853 72.3
Psat6g013160 Pisum sativum HOM05D005707 ORTHO05D007276 0.0e+00 1230.3 845 73.4
Pp3c25_5560 Physcomitrium patens HOM05D005707 ORTHO05D007276 0.0e+00 1164.1 1005 57.6
Lalb_Chr01g0023301 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1157.9 732 76.8
SMO329G0026 Selaginella moellendorffii HOM05D005707 ORTHO05D007276 0.0e+00 1145.2 937 61.8
Cpa.g.sc211.13 Carica papaya HOM05D005707 ORTHO05D007276 0.0e+00 1115.9 956 60.1
Sc15g0001000 Simmondsia chinensis HOM05D005707 ORTHO05D007276 6.5e-312 1074.3 704 74.9
Hma1.2p1_2056F.1_g312820 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 8.2e-289 997.3 628 79.3
Hma1.2p1_1267F.1_g271470 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 1.9e-285 986.1 626 78.8
CDE12G0215 Ceratophyllum demersum HOM05D005707 ORTHO05D007276 3.9e-267 925.2 707 66.1
CBR_g20017 Chara braunii HOM05D005707 ORTHO05D007276 1.3e-225 787.3 999 44.4
Lsat_1_v5_gn_9_104540 Lactuca sativa HOM05D005707 ORTHO05D007276 1.3e-201 707.6 459 76.5
HPP92_028369 Vanilla planifolia HOM05D005707 ORTHO05D007276 1.5e-173 614.4 444 68.7
HPP92_028368 Vanilla planifolia HOM05D005707 ORTHO05D007276 2.6e-133 480.7 303 76.6
Cre02.g095074 Chlamydomonas reinhardtii HOM05D005707 ORTHO05D007276 6.0e-114 416.4 1306 25.7
PRCOL_00006472 Prasinoderma coloniale HOM05D005707 ORTHO05D007276 2.3e-113 414.5 633 39.2
Lalb_Chr01g0023291 Lupinus albus HOM05D005707 ORTHO05D007276 7.4e-72 276.6 202 69.3
Nn6g32392 Nelumbo nucifera HOM05D005707 ORTHO05D007276 5.3e-70 270.4 207 66.2
SEGI_06176 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 2.5e-59 235.0 296 46.6
HPP92_014038 Vanilla planifolia HOM05D005707 ORTHO05D007276 6.0e-58 230.3 180 67.2
Nn6g32391 Nelumbo nucifera HOM05D005707 ORTHO05D007276 8.2e-47 193.4 117 78.6
Peaxi162Scf00585g00082 Petunia axillaris HOM05D000636 ORTHO05D002338 9.4e-43 179.9 129 65.9
HPP92_014036 Vanilla planifolia HOM05D005707 ORTHO05D007276 1.6e-42 179.1 197 48.7
HPP92_014037 Vanilla planifolia HOM05D005707 ORTHO05D048631 3.5e-37 161.4 140 62.1
Nn2g13354 Nelumbo nucifera HOM05D005707 ORTHO05D007276 8.0e-26 123.6 64 84.4
VMungo0331G0660 Vigna mungo HOM05D000100 ORTHO05D000052 6.3e-15 87.4 80 60.0
Actinidia07884 Actinidia chinensis HOM05D005707 ORTHO05D057301 9.2e-06 57.0 102 41.2


User provided reference genes

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