Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0618G038 Amborella trichopoda HOM05D005906 ORTHO05D007359 0.0e+00 1452.6 809 100.0
Nn3g18680 Nelumbo nucifera HOM05D005906 ORTHO05D007359 1.1e-188 664.5 829 51.9
MBI03_g33918_MAGBIO Magnolia biondii HOM05D005906 ORTHO05D007359 1.5e-187 660.6 801 54.3
TAR371G1124 Trochodendron aralioides HOM05D005906 ORTHO05D007359 3.4e-187 659.4 689 57.3
GSVIVG01010209001 Vitis vinifera HOM05D005906 ORTHO05D007359 7.9e-184 648.3 826 51.7
Haze_11727 Corylus avellana HOM05D005906 ORTHO05D007359 5.9e-171 605.5 826 48.1
CSS0007611 Camellia sinensis var. sinensis HOM05D005906 ORTHO05D007359 2.7e-168 596.7 807 48.5
Cfa008717 Carpinus fangiana HOM05D005906 ORTHO05D007359 6.7e-167 592.0 827 47.9
Aqoxy3G04280 Aquilegia oxysepala HOM05D005906 ORTHO05D007359 1.7e-162 577.4 830 46.4
Actinidia04315 Actinidia chinensis HOM05D005906 ORTHO05D007359 1.5e-161 574.3 541 58.6
Dinv12052 Davidia involucrata HOM05D005906 ORTHO05D007359 2.5e-161 573.5 632 53.8
Rhsim09G0071900 Rhododendron simsii HOM05D005906 ORTHO05D007359 2.4e-156 557.0 872 45.2
Prupe.1G345100 Prunus persica HOM05D005906 ORTHO05D007359 7.7e-155 552.0 638 54.1
CiPaw.05G166700 Carya illinoinensis HOM05D005906 ORTHO05D007359 1.6e-152 544.3 824 45.5
QL03p043467 Quercus lobata HOM05D005906 ORTHO05D007359 3.6e-152 543.1 823 45.6
Atru.chr11.1229 Acer truncatum HOM05D005906 ORTHO05D007359 4.7e-152 542.7 823 44.8
Gohir.D01G138300 Gossypium hirsutum HOM05D005906 ORTHO05D007359 4.7e-152 542.7 555 57.7
Gorai.002G167700 Gossypium raimondii HOM05D005906 ORTHO05D007359 1.8e-151 540.8 632 53.3
Atru.chr11.1316 Acer truncatum HOM05D005906 ORTHO05D007359 4.0e-151 539.7 823 44.5
Gohir.A01G145818 Gossypium hirsutum HOM05D005906 ORTHO05D007359 8.8e-151 538.5 631 54.2
Duzib251G0270 Durio zibethinus HOM05D005906 ORTHO05D007359 7.5e-150 535.4 628 53.0
TWI53G0095 Tripterygium wilfordii HOM05D005906 ORTHO05D007359 2.2e-149 533.9 727 47.3
Lju1295A4T31 Lonicera japonica HOM05D005906 ORTHO05D007359 3.8e-146 523.1 486 62.1
MD16G1000200 Malus domestica HOM05D005906 ORTHO05D007359 3.8e-146 523.1 588 54.4
EL10Ac9g22918 Beta vulgaris HOM05D005906 ORTHO05D007359 1.5e-145 521.2 472 59.7
MELO3C024279.2 Cucumis melo HOM05D005906 ORTHO05D007359 9.5e-145 518.5 563 54.2
Thecc.02G295800 Theobroma cacao HOM05D005906 ORTHO05D007359 1.2e-144 518.1 553 55.2
arahy.Tifrunner.gnm1.ann1.KE9NE3 Arachis hypogaea HOM05D005906 ORTHO05D007359 2.3e-143 513.8 821 44.3
CAN.G419.29 Capsicum annuum HOM05D005906 ORTHO05D007359 3.0e-143 513.5 778 44.0
RcHm_v2.0_Chr4g0446421 Rosa chinensis HOM05D005906 ORTHO05D007359 8.9e-143 511.9 728 47.4
Glyma.11G102600 Glycine max HOM05D005906 ORTHO05D007359 3.4e-142 510.0 706 46.3
Lalb_Chr01g0001511 Lupinus albus HOM05D005906 ORTHO05D007359 5.7e-142 509.2 619 50.4
Ciclev10030612m.g Citrus clementina HOM05D005906 ORTHO05D007359 2.8e-141 506.9 619 51.4
Glyma.11G103100 Glycine max HOM05D005906 ORTHO05D007359 3.7e-141 506.5 708 46.2
VMungo1127G1981 Vigna mungo HOM05D005906 ORTHO05D007359 8.3e-141 505.4 625 49.8
CsaV3_7G033650 Cucumis sativus L. HOM05D005906 ORTHO05D007359 1.1e-140 505.0 564 53.5
Sopen04g003870 Solanum pennellii HOM05D005906 ORTHO05D007359 5.4e-140 502.7 823 41.2
arahy.Tifrunner.gnm1.ann1.LWY0NT Arachis hypogaea HOM05D005906 ORTHO05D007359 1.6e-139 501.1 724 47.1
PSO782G0435 Papaver somniferum HOM05D005906 ORTHO05D007359 1.6e-139 501.1 605 52.2
Eucgr.G02565 Eucalyptus grandis HOM05D005906 ORTHO05D007359 2.0e-139 500.7 809 44.1
Potri.010G170400 Populus trichocarpa HOM05D005906 ORTHO05D007359 2.7e-139 500.4 627 49.4
PSO063G6838 Papaver somniferum HOM05D005906 ORTHO05D007359 5.9e-139 499.2 595 51.6
Phvul.011G031500 Phaseolus vulgaris HOM05D005906 ORTHO05D007359 7.8e-139 498.8 628 51.1
Solyc04g008700.3 Solanum lycopersicum HOM05D005906 ORTHO05D007359 1.3e-138 498.0 823 40.9
Lj3g0019719 Lotus japonicus HOM05D005906 ORTHO05D007359 1.1e-137 495.0 643 48.1
HanXRQChr17g0540691 Helianthus annuus HOM05D005906 ORTHO05D007359 1.5e-137 494.6 468 57.9
CDE08G0300 Ceratophyllum demersum HOM05D005906 ORTHO05D007359 4.7e-136 489.6 835 41.8
Peaxi162Scf00329g00515 Petunia axillaris HOM05D005906 ORTHO05D007359 4.7e-136 489.6 827 41.7
TWI74G1493 Tripterygium wilfordii HOM05D005906 ORTHO05D007359 1.4e-135 488.0 714 46.1
DCAR_006599 Daucus carota HOM05D005906 ORTHO05D007359 2.3e-135 487.3 555 52.3
Sc10g0007040 Simmondsia chinensis HOM05D005906 ORTHO05D007359 8.9e-135 485.3 611 49.6
Psat7g176600 Pisum sativum HOM05D005906 ORTHO05D007359 1.2e-134 485.0 650 48.9
Nitab4.5_0001983g0010 Nicotiana tabacum HOM05D005906 ORTHO05D007359 2.0e-134 484.2 837 40.9
PGR142G1078 Punica granatum HOM05D005906 ORTHO05D007359 2.0e-134 484.2 652 48.5
Medtr4g074440 Medicago truncatula HOM05D005906 ORTHO05D007359 7.5e-134 482.3 465 57.4
ECA246G1682 Erigeron canadensis HOM05D005906 ORTHO05D007359 9.8e-134 481.9 809 41.0
Sed0021796 Sechium edule HOM05D005906 ORTHO05D007359 1.1e-132 478.4 565 51.7
Glyma.12G028100 Glycine max HOM05D005906 ORTHO05D007359 3.5e-131 473.4 716 44.1
HPP92_015160 Vanilla planifolia HOM05D005906 ORTHO05D007359 4.3e-129 466.5 833 41.8
CDE04G3187 Ceratophyllum demersum HOM05D005906 ORTHO05D007359 2.1e-128 464.2 830 40.2
Oeu022359.1 Olea europaea HOM05D005906 ORTHO05D007359 2.0e-126 457.6 705 45.1
AUR62015199 Chenopodium quinoa HOM05D005906 ORTHO05D007359 3.4e-126 456.8 514 52.7
TPR.G21563 Trifolium pratense HOM05D005906 ORTHO05D007359 7.5e-126 455.7 562 49.3
AUR62017662 Chenopodium quinoa HOM05D005906 ORTHO05D007359 1.4e-124 451.4 498 54.0
Os10g0485000 Oryza sativa ssp. japonica HOM05D005906 ORTHO05D007359 4.1e-124 449.9 786 40.2
Carub.0003s1972 Capsella rubella HOM05D005906 ORTHO05D007359 9.2e-124 448.7 488 54.7
FvH4_4g36700 Fragaria vesca HOM05D005906 ORTHO05D007359 1.2e-123 448.4 801 41.3
AT3G19840 Arabidopsis thaliana HOM05D005906 ORTHO05D007359 6.6e-122 442.6 491 54.4
FAN17G1621 Fragaria x ananassa HOM05D005906 ORTHO05D007359 1.9e-121 441.0 488 54.3
CANSAT64G0121 Cannabis sativa HOM05D005906 ORTHO05D007359 5.6e-121 439.5 505 51.9
AL3G33350 Arabidopsis lyrata HOM05D005906 ORTHO05D007359 4.7e-120 436.4 488 53.3
Migut.N00351 Erythranthe guttata HOM05D005906 ORTHO05D007359 6.2e-120 436.0 637 45.5
Manes.03G080900 Manihot esculenta HOM05D005906 ORTHO05D007359 8.9e-119 432.2 363 62.3
Thhalv10020134m.g Eutrema salsugineum HOM05D005906 ORTHO05D007359 1.5e-118 431.4 488 52.3
Sp3g17850 Schrenkiella parvula HOM05D005906 ORTHO05D007359 4.9e-117 426.4 642 45.5
FAN12G0559 Fragaria x ananassa HOM05D005906 ORTHO05D007359 1.6e-115 421.4 724 42.3
FAN07G0309 Fragaria x ananassa HOM05D005906 ORTHO05D007359 7.8e-115 419.1 734 41.4
SGA_v2.0_scaffold317G48430 Striga asiatica HOM05D005906 ORTHO05D007359 3.9e-114 416.8 649 45.0
BraA05t21811Z Brassica rapa HOM05D005906 ORTHO05D007359 1.5e-113 414.8 488 50.4
ClCG09G001670 Citrullus lanatus HOM05D005906 ORTHO05D007359 1.9e-113 414.5 509 50.1
A05p29280 Brassica napus HOM05D005906 ORTHO05D007359 4.3e-113 413.3 634 43.5
C05p44790 Brassica napus HOM05D005906 ORTHO05D007359 3.6e-112 410.2 619 44.6
Lsat_1_v5_gn_0_9300 Lactuca sativa HOM05D005906 ORTHO05D007359 7.6e-110 402.5 764 39.5
BcaB06g26053 Brassica carinata HOM05D005906 ORTHO05D007359 2.4e-108 397.5 613 44.5
CARHR095360 Cardamine hirsuta HOM05D005906 ORTHO05D007359 3.2e-108 397.1 359 61.3
Mapoly0048s0088 Marchantia polymorpha HOM05D005906 ORTHO05D007359 2.7e-107 394.0 508 50.8
vmacro16015 Vaccinium macrocarpon HOM05D005906 ORTHO05D007359 8.7e-106 389.0 770 39.1
Pp3c7_20890 Physcomitrium patens HOM05D005906 ORTHO05D007359 9.6e-105 385.6 518 50.6
SEGI_27443 Sequoiadendron giganteum HOM05D005906 ORTHO05D007359 2.4e-103 380.9 862 37.8
Sabra10G0130100 Salix brachista HOM05D005906 ORTHO05D007359 5.8e-102 376.3 539 45.3
BolC5t33205H Brassica oleracea HOM05D005906 ORTHO05D007359 2.2e-101 374.4 684 39.3
unitig_26.g9977 Utricularia gibba HOM05D005906 ORTHO05D007359 7.1e-100 369.4 542 45.8
Pp3c11_2890 Physcomitrium patens HOM05D005906 ORTHO05D007359 2.1e-99 367.9 576 45.3
CBR_g3777 Chara braunii HOM05D005906 ORTHO05D007359 4.8e-96 356.7 353 55.8
COL.COLO4_16625 Corchorus olitorius HOM05D005906 ORTHO05D007359 1.0e-90 339.0 274 66.1
Ca_03032_v3 Cicer arietinum L. HOM05D005906 ORTHO05D007359 1.8e-87 328.2 531 43.5
Aa31LG8G6610 Aethionema arabicum HOM05D005906 ORTHO05D007359 4.2e-84 317.0 490 43.5
MD13G1007900 Malus domestica HOM05D005906 ORTHO05D007359 4.8e-80 303.5 385 49.1
Nitab4.5_0000129g0230 Nicotiana tabacum HOM05D005906 ORTHO05D007359 5.3e-79 300.1 710 35.5
SMO347G0007 Selaginella moellendorffii HOM05D005906 ORTHO05D007359 2.6e-78 297.7 532 41.9
BcaC05g28400 Brassica carinata HOM05D005906 ORTHO05D007359 1.3e-77 295.4 554 39.2
HanXRQChr13g0425271 Helianthus annuus HOM05D005906 ORTHO05D007359 2.8e-56 224.6 309 44.0
Zm00001eb221360 Zea mays HOM05D005906 ORTHO05D007359 9.4e-52 209.5 198 56.6
arahy.Tifrunner.gnm1.ann1.HBZ9IW Arachis hypogaea HOM05D005906 ORTHO05D007359 5.2e-50 203.8 311 44.1
SEGI_19557 Sequoiadendron giganteum HOM05D005906 ORTHO05D007359 1.3e-48 199.1 118 83.1
COL.COLO4_27510 Corchorus olitorius HOM05D005906 ORTHO05D007359 5.9e-46 190.3 291 44.7
Ca_03031_v3 Cicer arietinum L. HOM05D005906 ORTHO05D007359 2.2e-45 188.3 118 78.8
Nitab4.5_0000129g0240 Nicotiana tabacum HOM05D005906 ORTHO05D007359 5.5e-44 183.7 111 77.5
SEGI_30722 Sequoiadendron giganteum HOM05D005906 ORTHO05D007359 9.8e-33 146.4 92 80.4
ECA246G3641 Erigeron canadensis HOM05D005906 ORTHO05D007359 1.3e-29 136.0 93 69.9
vmacro16014 Vaccinium macrocarpon HOM05D005906 ORTHO05D007359 1.1e-28 132.9 83 77.1
Cpa.g.sc63.9 Carica papaya HOM05D005906 ORTHO05D007359 2.8e-27 128.3 84 72.6
Nitab4.5_0001093g0090 Nicotiana tabacum HOM05D002048 ORTHO05D002146 1.5e-17 95.9 384 28.1
Cre09.g393551 Chlamydomonas reinhardtii HOM05D005906 ORTHO05D007359 3.4e-17 94.7 88 47.7
CsaV3_7G033660 Cucumis sativus L. HOM05D000532 ORTHO05D002745 1.6e-14 85.9 107 55.1
MELO3C024280.2 Cucumis melo HOM05D000532 ORTHO05D002745 2.7e-14 85.1 108 54.6
arahy.Tifrunner.gnm1.ann1.RUY2TK Arachis hypogaea HOM05D005906 ORTHO05D007359 8.6e-13 80.1 96 52.1
Nitab4.5_0000001g0490 Nicotiana tabacum HOM05D002048 ORTHO05D002146 2.5e-12 78.6 327 28.4
COL.COLO4_28464 Corchorus olitorius HOM05D002048 ORTHO05D002146 4.3e-12 77.8 342 24.6
Oeu037291.1 Olea europaea HOM05D002048 ORTHO05D002146 9.5e-12 76.6 322 26.4
Solyc11g044340.3 Solanum lycopersicum HOM05D002048 ORTHO05D002146 3.6e-11 74.7 328 25.9
Haze_10301 Corylus avellana HOM05D002048 ORTHO05D002146 1.4e-10 72.8 405 23.2
CARHR036140 Cardamine hirsuta HOM05D002048 ORTHO05D002146 1.8e-10 72.4 375 25.1
CAN.G309.109 Capsicum annuum HOM05D002048 ORTHO05D002146 2.3e-10 72.0 315 26.0
Cc10_g07610 Coffea canephora HOM05D002048 ORTHO05D002146 5.2e-10 70.9 313 25.6
SGA_v2.0_scaffold219G42539 Striga asiatica HOM05D002048 ORTHO05D002146 5.2e-10 70.9 340 25.9
Pp3c19_9950 Physcomitrium patens HOM05D002048 ORTHO05D002146 7.5e-09 67.0 314 25.2
Cpa.g.c31481.2 Carica papaya HOM05D005906 ORTHO05D007359 1.3e-08 66.2 265 31.3
Carub.0001s3541 Capsella rubella HOM05D002048 ORTHO05D002146 2.9e-08 65.1 355 24.8
vmacro01946 Vaccinium macrocarpon HOM05D002048 ORTHO05D002146 4.9e-08 64.3 432 24.3
Prupe.8G150300 Prunus persica HOM05D002048 ORTHO05D002146 1.1e-07 63.2 373 24.7
Rhsim06G0064500 Rhododendron simsii HOM05D002048 ORTHO05D002146 1.1e-07 63.2 320 26.6
Migut.N01126 Erythranthe guttata HOM05D002048 ORTHO05D002146 1.4e-07 62.8 339 24.8
Psat7g231400 Pisum sativum HOM05D004500 ORTHO05D005775 1.4e-07 62.8 310 26.5
unitig_26.g9560 Utricularia gibba HOM05D002048 ORTHO05D002146 1.4e-07 62.8 506 24.7
CAN.G575.100 Capsicum annuum HOM05D002048 ORTHO05D002146 7.1e-07 60.5 319 25.7
CAN.G309.145 Capsicum annuum HOM05D002048 ORTHO05D000034 9.2e-07 60.1 304 24.3
ECA247G1183 Erigeron canadensis HOM05D002048 ORTHO05D002146 1.2e-06 59.7 324 23.5
Lsat_1_v5_gn_6_111581 Lactuca sativa HOM05D002048 ORTHO05D002146 2.7e-06 58.5 345 22.9
Sopen11g019850 Solanum pennellii HOM05D002048 ORTHO05D002146 2.7e-06 58.5 368 21.5
Nitab4.5_0005621g0040 Nicotiana tabacum HOM05D005906 ORTHO05D007359 3.5e-06 58.2 118 42.4
Pp3c22_21780 Physcomitrium patens HOM05D002048 ORTHO05D002146 4.6e-06 57.8 331 23.9
Sc26g0004230 Simmondsia chinensis HOM05D002048 ORTHO05D002146 4.6e-06 57.8 507 22.7
CAN.G1579.12 Capsicum annuum HOM05D002048 ORTHO05D002146 7.8e-06 57.0 300 23.3
CAN.G1816.1 Capsicum annuum HOM05D002048 ORTHO05D002146 7.8e-06 57.0 311 24.8
DCAR_028524 Daucus carota HOM05D002048 ORTHO05D002146 7.8e-06 57.0 240 26.2


User provided reference genes

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