Gene: Sopen04g003870

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen04g003870
  • Transcript Identifier Sopen04g003870.2
  • Gene Type Coding gene
  • Location Spenn-ch04 : 2568918-2586940 : positive

Gene Family Information

  • ID HOM05D005906
  • #Genes/#Species 133/90
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen04g003870.2

Descriptions

  • Description Binds the carboxyl-terminal domain (CTD) of the largest subunit of RNA polymerase II and functions as a scaffold for RNA processing machineries. | pre-mRNA-processing protein 40C (PRP40C) | CONTAINS InterPro DOMAIN/s: FF domain , WW/Rsp5/WWP | BEST Arabidopsis thaliana protein match is: pre-mRNA-processing protein 40A
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008380
ISO
PLAZA Integrative OrthologyRNA splicing AT3G19840

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0003712
IEA
InterProtranscription coregulator activity
GO:0070063
IEA
InterProRNA polymerase binding

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036517 FF domain superfamily
IPR001202 WW domain
IPR036020 WW domain superfamily
IPR045148 Transcription elongation regulator 1-like
IPR002713 FF domain
Mapman id Description
16.2.1.1.5.5 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).accessory protein activities.pre-mRNA-processing protein (PRP40C)