Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0605G091 Amborella trichopoda HOM05D004763 ORTHO05D007492 0.0e+00 1312.4 671 100.0
Nn7g36058 Nelumbo nucifera HOM05D004763 ORTHO05D007492 0.0e+00 1085.9 673 82.3
TAR623G1126 Trochodendron aralioides HOM05D004763 ORTHO05D007492 0.0e+00 1075.1 672 81.1
Hund22081 Selenicereus undatus HOM05D004763 ORTHO05D007492 4.6e-312 1073.9 671 80.2
GSVIVG01025336001 Vitis vinifera HOM05D004763 ORTHO05D007492 2.3e-311 1071.6 672 80.1
TWI34G0672 Tripterygium wilfordii HOM05D004763 ORTHO05D007492 3.8e-309 1064.3 671 80.3
Gohir.D13G219100 Gossypium hirsutum HOM05D004763 ORTHO05D007492 6.5e-309 1063.5 674 80.0
CSS0044360 Camellia sinensis var. sinensis HOM05D004763 ORTHO05D007492 1.1e-308 1062.8 660 80.8
Gorai.013G250000 Gossypium raimondii HOM05D004763 ORTHO05D007492 1.5e-308 1062.4 674 80.0
Sc09g0000480 Simmondsia chinensis HOM05D004763 ORTHO05D007492 2.5e-308 1061.6 673 79.5
Gohir.A13G215400 Gossypium hirsutum HOM05D004763 ORTHO05D007492 5.5e-308 1060.4 667 80.2
Thecc.09G223100 Theobroma cacao HOM05D004763 ORTHO05D007492 5.5e-308 1060.4 660 80.5
Dinv36304 Davidia involucrata HOM05D004763 ORTHO05D007492 1.6e-307 1058.9 672 79.5
EL10Ac4g10318 Beta vulgaris HOM05D004763 ORTHO05D007492 6.1e-307 1057.0 660 80.5
CiPaw.14G125100 Carya illinoinensis HOM05D004763 ORTHO05D007492 6.1e-307 1057.0 672 78.7
MELO3C014639.2 Cucumis melo HOM05D004763 ORTHO05D007492 1.0e-306 1056.2 671 79.6
PSO339G3791 Papaver somniferum HOM05D004763 ORTHO05D007492 4.0e-306 1054.3 672 80.2
Manes.14G014500 Manihot esculenta HOM05D004763 ORTHO05D007492 6.8e-306 1053.5 667 79.6
QL01p006243 Quercus lobata HOM05D004763 ORTHO05D007492 1.2e-305 1052.7 674 79.1
Aqoxy1G00185 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 7.5e-305 1050.0 671 78.8
Hma1.2p1_1169F.1_g263300 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 7.5e-305 1050.0 672 79.0
Potri.003G211000 Populus trichocarpa HOM05D004763 ORTHO05D007492 9.8e-305 1049.7 671 78.7
CsaV3_4G023800 Cucumis sativus L. HOM05D004763 ORTHO05D007492 1.3e-304 1049.3 671 79.0
Ciclev10014511m.g Citrus clementina HOM05D004763 ORTHO05D007492 2.2e-304 1048.5 670 79.7
Glyma.13G342900 Glycine max HOM05D004763 ORTHO05D007492 2.2e-304 1048.5 672 79.6
AUR62019250 Chenopodium quinoa HOM05D004763 ORTHO05D007492 5.4e-303 1043.9 671 79.3
HPP92_020536 Vanilla planifolia HOM05D004763 ORTHO05D007492 5.4e-303 1043.9 658 79.5
CANSAT54G1729 Cannabis sativa HOM05D004763 ORTHO05D007492 7.0e-303 1043.5 675 78.8
Medtr2g098510 Medicago truncatula HOM05D004763 ORTHO05D007492 9.2e-303 1043.1 672 78.9
CDE04G0998 Ceratophyllum demersum HOM05D004763 ORTHO05D007492 2.0e-302 1042.0 641 82.4
Cc01_g04070 Coffea canephora HOM05D004763 ORTHO05D007492 7.8e-302 1040.0 672 78.3
Sed0013957 Sechium edule HOM05D004763 ORTHO05D007492 1.7e-301 1038.9 671 77.9
arahy.Tifrunner.gnm1.ann1.P0K6XU Arachis hypogaea HOM05D004763 ORTHO05D007492 2.3e-301 1038.5 674 79.4
arahy.Tifrunner.gnm1.ann1.VYK1P0 Arachis hypogaea HOM05D004763 ORTHO05D007492 5.0e-301 1037.3 674 79.2
Psat5g288480 Pisum sativum HOM05D004763 ORTHO05D007492 6.6e-301 1036.9 668 78.9
COL.COLO4_09893 Corchorus olitorius HOM05D004763 ORTHO05D007492 1.1e-300 1036.2 661 79.1
Phvul.005G150500 Phaseolus vulgaris HOM05D004763 ORTHO05D007492 1.1e-300 1036.2 667 79.5
Prupe.6G018600 Prunus persica HOM05D004763 ORTHO05D007492 1.5e-300 1035.8 691 76.6
arahy.Tifrunner.gnm1.ann1.GN3GFY Arachis hypogaea HOM05D004763 ORTHO05D007492 1.9e-300 1035.4 674 79.1
THA.LOC104816912 Tarenaya hassleriana HOM05D004763 ORTHO05D007492 1.9e-300 1035.4 666 79.1
RcHm_v2.0_Chr5g0078101 Rosa chinensis HOM05D004763 ORTHO05D007492 4.3e-300 1034.2 665 78.5
Eucgr.B03662 Eucalyptus grandis HOM05D004763 ORTHO05D007492 1.2e-299 1032.7 672 77.4
HanXRQChr14g0451781 Helianthus annuus HOM05D004763 ORTHO05D007492 1.2e-299 1032.7 671 78.4
Lalb_Chr14g0372291 Lupinus albus HOM05D004763 ORTHO05D007492 1.6e-299 1032.3 672 78.4
MD03G1021100 Malus domestica HOM05D004763 ORTHO05D007492 2.1e-299 1031.9 673 77.3
FvH4_3g43550 Fragaria vesca HOM05D004763 ORTHO05D007492 3.6e-299 1031.2 665 77.9
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 1.0e-298 1029.6 673 77.1
Cpa.g.sc84.111 Carica papaya HOM05D004763 ORTHO05D007492 5.2e-298 1027.3 688 75.9
Lj3g0020649 Lotus japonicus HOM05D004763 ORTHO05D007492 2.0e-297 1025.4 672 78.6
ECA238G4453 Erigeron canadensis HOM05D004763 ORTHO05D007492 5.7e-297 1023.8 671 77.3
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 5.7e-297 1023.8 644 80.7
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 1.3e-296 1022.7 662 79.0
AL3G34700 Arabidopsis lyrata HOM05D004763 ORTHO05D007492 1.7e-296 1022.3 666 78.1
Os09g0279600 Oryza sativa ssp. japonica HOM05D004763 ORTHO05D007492 8.3e-296 1020.0 645 78.4
Sabra03G0153800 Salix brachista HOM05D004763 ORTHO05D007492 1.4e-295 1019.2 647 78.8
Sabra03G0156000 Salix brachista HOM05D004763 ORTHO05D007492 1.4e-295 1019.2 647 78.8
AT3G20780 Arabidopsis thaliana HOM05D004763 ORTHO05D007492 4.1e-295 1017.7 663 77.5
FAN16G3272 Fragaria x ananassa HOM05D004763 ORTHO05D007492 4.1e-295 1017.7 675 76.4
Thhalv10020214m.g Eutrema salsugineum HOM05D004763 ORTHO05D007492 5.4e-295 1017.3 662 77.6
Sp3g18800 Schrenkiella parvula HOM05D004763 ORTHO05D007492 7.0e-295 1016.9 661 77.6
Carub.0003s2074 Capsella rubella HOM05D004763 ORTHO05D007492 9.2e-295 1016.5 663 77.2
BcaC05g28282 Brassica carinata HOM05D004763 ORTHO05D007492 1.2e-294 1016.1 663 77.1
C05p43300 Brassica napus HOM05D004763 ORTHO05D007492 2.0e-294 1015.4 663 76.9
Migut.D00558 Erythranthe guttata HOM05D004763 ORTHO05D007492 7.8e-294 1013.4 674 76.1
arahy.Tifrunner.gnm1.ann1.X75IXN Arachis hypogaea HOM05D004763 ORTHO05D007492 1.7e-293 1012.3 712 74.6
PGR102G0325 Punica granatum HOM05D004763 ORTHO05D007492 3.0e-293 1011.5 671 77.3
BcaB06g26148 Brassica carinata HOM05D004763 ORTHO05D007492 6.6e-293 1010.4 672 76.0
Peaxi162Scf00773g00119 Petunia axillaris HOM05D004763 ORTHO05D007492 1.5e-292 1009.2 680 74.9
Duzib150G1218 Durio zibethinus HOM05D004763 ORTHO05D007492 5.6e-292 1007.3 685 75.8
Sopen01g009200 Solanum pennellii HOM05D004763 ORTHO05D007492 1.6e-291 1005.7 671 75.1
Solyc01g014490.4 Solanum lycopersicum HOM05D004763 ORTHO05D007492 4.7e-291 1004.2 671 75.0
A05p28000 Brassica napus HOM05D004763 ORTHO05D007492 6.2e-291 1003.8 686 74.9
BraA05t21683Z Brassica rapa HOM05D004763 ORTHO05D007492 7.5e-289 996.9 694 74.2
BolC5t33062H Brassica oleracea HOM05D004763 ORTHO05D007492 7.8e-286 986.9 694 73.1
Nitab4.5_0006575g0020 Nicotiana tabacum HOM05D004763 ORTHO05D007492 2.3e-285 985.3 695 74.4
Nitab4.5_0003069g0050 Nicotiana tabacum HOM05D004763 ORTHO05D007492 5.2e-282 974.2 679 75.3
SGA_v2.0_scaffold1G00797 Striga asiatica HOM05D004763 ORTHO05D007492 7.5e-281 970.3 724 71.1
Rhsim01G0189300 Rhododendron simsii HOM05D004763 ORTHO05D007492 5.6e-276 954.1 756 67.6
Aa31LG8G7590 Aethionema arabicum HOM05D004763 ORTHO05D007492 6.4e-272 940.6 646 74.5
Lsat_1_v5_gn_2_101121 Lactuca sativa HOM05D004763 ORTHO05D007492 1.2e-270 936.4 689 70.7
AagrBONN_evm.TU.Sc2ySwM_344.3405 Anthoceros agrestis HOM05D004763 ORTHO05D007492 1.5e-268 929.5 645 71.8
Pp3c22_12720 Physcomitrium patens HOM05D004763 ORTHO05D007492 1.5e-268 929.5 665 71.0
Ah.04g161760 Amaranthus hybridus HOM05D004763 ORTHO05D007492 4.7e-267 924.5 671 72.0
SMO116G0144 Selaginella moellendorffii HOM05D004763 ORTHO05D007492 1.5e-265 919.5 647 72.0
Actinidia39377 Actinidia chinensis HOM05D004763 ORTHO05D007492 1.4e-263 912.9 673 71.0
Mapoly0042s0060 Marchantia polymorpha HOM05D004763 ORTHO05D007492 3.0e-261 905.2 661 69.1
Atru.chr3.2503 Acer truncatum HOM05D004763 ORTHO05D007492 1.5e-257 892.9 579 77.2
Ca_01270_v3 Cicer arietinum L. HOM05D004763 ORTHO05D007492 1.7e-256 889.4 595 76.6
CARHR096610 Cardamine hirsuta HOM05D004763 ORTHO05D007492 6.0e-254 880.9 593 75.2
CBR_g31022 Chara braunii HOM05D004763 ORTHO05D007492 5.1e-253 877.9 661 67.0
Aqoxy381s001 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 1.1e-250 870.2 653 70.8
DCAR_024396 Daucus carota HOM05D004763 ORTHO05D007492 7.6e-249 864.0 674 67.8
Lj4g0010878 Lotus japonicus HOM05D004763 ORTHO05D007492 1.8e-242 842.8 672 68.5
FAN21G2003 Fragaria x ananassa HOM05D004763 ORTHO05D007492 7.6e-241 837.4 638 69.1
Hma1.2p1_1169F.1_g263310 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 2.9e-240 835.5 509 80.6
FAN11G2145 Fragaria x ananassa HOM05D004763 ORTHO05D007492 6.9e-234 814.3 703 62.9
FAN11G0713 Fragaria x ananassa HOM05D004763 ORTHO05D007492 1.0e-229 800.4 702 61.7
Potri.T085401 Populus trichocarpa HOM05D004763 ORTHO05D007492 1.1e-220 770.4 445 85.4
Zm00001eb308780 Zea mays HOM05D004763 ORTHO05D007492 4.4e-212 741.9 462 79.0
Cre01.g019750 Chlamydomonas reinhardtii HOM05D004763 ORTHO05D007492 5.7e-196 688.3 683 53.4
SEGI_32015 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 3.2e-178 629.4 382 80.9
MCO09G243 Micromonas commoda HOM05D004763 ORTHO05D007492 2.0e-177 626.7 676 51.5
PRCOL_00005940 Prasinoderma coloniale HOM05D004763 ORTHO05D007492 6.6e-176 621.7 675 50.5
MBI01_g15753_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D007492 3.6e-174 615.9 379 84.2
Lsat_1_v5_gn_1_127001 Lactuca sativa HOM05D004763 ORTHO05D007492 9.8e-172 607.8 540 60.4
ClCG02G023620 Citrullus lanatus HOM05D004763 ORTHO05D007492 1.5e-167 594.0 374 82.1
CAN.G646.1 Capsicum annuum HOM05D004763 ORTHO05D007492 7.3e-159 565.1 365 77.5
PGSC0003DMG401029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 5.2e-157 558.9 386 74.6
Lj1A366T12 Lonicera japonica HOM05D004763 ORTHO05D007492 1.2e-137 494.6 367 70.6
Lsat_1_v5_gn_1_127121 Lactuca sativa HOM05D004763 ORTHO05D007492 2.2e-131 473.8 613 47.8
Lju1319A4T15 Lonicera japonica HOM05D004763 ORTHO05D007492 3.0e-128 463.4 304 76.0
CAN.G442.1 Capsicum annuum HOM05D004763 ORTHO05D007492 1.2e-121 441.4 306 70.9
PGSC0003DMG402029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 5.1e-120 436.0 305 71.1
Lsat_1_v5_gn_1_126981 Lactuca sativa HOM05D004763 ORTHO05D007492 1.8e-104 384.4 508 46.7
Lj1C366G5 Lonicera japonica HOM05D004763 ORTHO05D007492 1.8e-101 374.4 296 66.9
SEGI_39045 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 7.5e-79 299.3 215 70.7
Actinidia06319 Actinidia chinensis HOM05D004763 ORTHO05D007492 8.6e-67 259.2 214 64.5
Lju1319C4G3 Lonicera japonica HOM05D004763 ORTHO05D014896 6.8e-56 223.0 232 56.5
Eucgr.B03660 Eucalyptus grandis HOM05D004763 ORTHO05D007492 3.2e-53 214.2 173 61.8
Oeu036968.1 Olea europaea HOM05D004763 ORTHO05D007492 1.5e-50 205.3 104 87.5
TPR.G29742 Trifolium pratense HOM05D004763 ORTHO05D007492 6.2e-49 199.9 246 50.4
Lsat_1_v5_gn_1_126941 Lactuca sativa HOM05D004763 ORTHO05D007492 2.4e-45 188.0 200 53.5
TPR.G29743 Trifolium pratense HOM05D004763 ORTHO05D007492 9.2e-45 186.0 218 53.2
Lsat_1_v5_gn_1_127201 Lactuca sativa HOM05D004763 ORTHO05D007492 8.7e-35 152.9 406 31.8
MBI09_g40619_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D019264 1.1e-34 152.5 101 78.2
MBI04_g09599_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 1.5e-34 152.1 101 78.2
Ca_01269_v3 Cicer arietinum L. HOM05D000073 ORTHO05D000033 4.3e-34 150.6 105 77.1
Lsat_1_v5_gn_1_127161 Lactuca sativa HOM05D004763 ORTHO05D007492 4.3e-34 150.6 174 51.1
MBI02_g24793_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 1.3e-33 149.1 101 77.2
Aa31LG8G7550 Aethionema arabicum HOM05D004763 ORTHO05D007492 8.1e-33 146.4 465 32.5
Thecc.03G073800 Theobroma cacao HOM05D004763 ORTHO05D019264 5.8e-31 140.2 107 67.3
PGSC0003DMG400012096 Solanum tuberosum HOM05D004763 ORTHO05D014896 1.1e-26 125.9 86 74.4
PGSC0003DMG401017076 Solanum tuberosum HOM05D004763 ORTHO05D026177 6.9e-24 116.7 136 48.5
arahy.Tifrunner.gnm1.ann1.G1IAFF Arachis hypogaea HOM05D004763 ORTHO05D014896 1.8e-19 102.1 82 68.3
arahy.Tifrunner.gnm1.ann1.50I1V9 Arachis hypogaea HOM05D004763 ORTHO05D014896 3.0e-19 101.3 68 77.9
arahy.Tifrunner.gnm1.ann1.F7UR4V Arachis hypogaea HOM05D004763 ORTHO05D014896 3.0e-19 101.3 68 77.9
Lju1319A4T14 Lonicera japonica HOM05D004763 ORTHO05D019264 1.9e-18 98.6 54 88.9
Lsat_1_v5_gn_3_118680 Lactuca sativa HOM05D004763 ORTHO05D007492 4.8e-17 94.0 53 83.0
PGSC0003DMG400026817 Solanum tuberosum HOM05D004763 ORTHO05D026177 7.6e-15 86.7 82 61.0
arahy.Tifrunner.gnm1.ann1.65KXHR Arachis hypogaea HOM05D004763 ORTHO05D014896 1.0e-14 86.3 49 87.8
TWI60G1170 Tripterygium wilfordii HOM05D004763 ORTHO05D014896 2.2e-14 85.1 49 87.8
Sopen04g015550 Solanum pennellii HOM05D000004 ORTHO05D000002 1.1e-13 82.8 96 53.1
arahy.Tifrunner.gnm1.ann1.YT3XVJ Arachis hypogaea HOM05D012186 ORTHO05D009594 3.2e-13 81.3 97 50.5
Lsat_1_v5_gn_1_125620 Lactuca sativa HOM05D004763 ORTHO05D007492 2.7e-12 78.2 155 37.4
Lsat_1_v5_gn_1_126960 Lactuca sativa HOM05D004763 ORTHO05D012314 9.6e-10 69.7 68 48.5
Solyc11g028310.3 Solanum lycopersicum HOM05D004763 ORTHO05D026177 9.6e-10 69.7 62 59.7
PGSC0003DMG400019106 Solanum tuberosum HOM05D004763 ORTHO05D007492 2.8e-09 68.2 37 83.8
Solyc12g036030.1 Solanum lycopersicum HOM05D004763 ORTHO05D026177 4.1e-08 64.3 96 43.8
Aa31LG8G7540 Aethionema arabicum HOM05D004763 ORTHO05D007492 9.0e-08 63.2 72 50.0
Solyc11g028340.3 Solanum lycopersicum HOM05D004763 ORTHO05D019264 1.0e-06 59.7 43 62.8
Lsat_1_v5_gn_8_146221 Lactuca sativa HOM05D004763 ORTHO05D014896 3.8e-06 57.8 33 84.8
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 8.4e-06 56.6 43 62.8


User provided reference genes

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