Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0580G403 Amborella trichopoda HOM05D003522 ORTHO05D003993 9.8e-49 196.4 96 100.0
ATR0763G200 Amborella trichopoda HOM05D003522 ORTHO05D003993 6.4e-16 87.4 46 95.7
Dinv42765 Davidia involucrata HOM05D003522 ORTHO05D003993 6.4e-16 87.4 71 64.8
TAR383G1055 Trochodendron aralioides HOM05D003522 ORTHO05D003993 6.4e-16 87.4 46 95.7
TAR626G0766 Trochodendron aralioides HOM05D003522 ORTHO05D003993 6.4e-16 87.4 46 95.7
TAR636G2407 Trochodendron aralioides HOM05D003522 ORTHO05D003993 6.4e-16 87.4 46 95.7
Sed0019676 Sechium edule HOM05D003522 ORTHO05D003993 8.3e-16 87.0 75 68.0
MBI14_g26429_MAGBIO Magnolia biondii HOM05D003522 ORTHO05D003993 1.1e-15 86.7 46 93.5
Actinidia21860 Actinidia chinensis HOM05D003522 ORTHO05D003993 1.4e-15 86.3 46 93.5
Nn2g14329 Nelumbo nucifera HOM05D003522 ORTHO05D003993 1.4e-15 86.3 46 93.5
HPP92_018528 Vanilla planifolia HOM05D003522 ORTHO05D003993 1.4e-15 86.3 46 93.5
GSVIVG01008301001 Vitis vinifera HOM05D003522 ORTHO05D003993 1.4e-15 86.3 46 93.5
PSO063G7604 Papaver somniferum HOM05D003522 ORTHO05D003993 2.4e-15 85.5 46 93.5
Mapoly0127s0039 Marchantia polymorpha HOM05D003522 ORTHO05D003993 3.2e-15 85.1 46 91.3
PSO782G1667 Papaver somniferum HOM05D003522 ORTHO05D003993 3.2e-15 85.1 46 93.5
PGR044G2568 Punica granatum HOM05D003522 ORTHO05D003993 3.2e-15 85.1 46 91.3
Atru.chr7.568 Acer truncatum HOM05D003522 ORTHO05D003993 4.1e-15 84.7 46 91.3
MSTRG.19883 Avicennia marina HOM05D003522 ORTHO05D003993 4.1e-15 84.7 46 91.3
MSTRG.26107 Avicennia marina HOM05D003522 ORTHO05D003993 4.1e-15 84.7 46 91.3
MSTRG.6452 Avicennia marina HOM05D003522 ORTHO05D003993 4.1e-15 84.7 46 91.3
EL10Ac6g15226 Beta vulgaris HOM05D003522 ORTHO05D003993 4.1e-15 84.7 46 91.3
CSS0040204 Camellia sinensis var. sinensis HOM05D003522 ORTHO05D003993 4.1e-15 84.7 46 91.3
CANSAT11G1348 Cannabis sativa HOM05D003522 ORTHO05D003993 4.1e-15 84.7 46 91.3
Cpa.g.sc126.37 Carica papaya HOM05D003522 ORTHO05D003993 4.1e-15 84.7 46 91.3
CDE01G0803 Ceratophyllum demersum HOM05D003522 ORTHO05D003993 4.1e-15 84.7 46 91.3
CDE12G0561 Ceratophyllum demersum HOM05D003522 ORTHO05D003993 4.1e-15 84.7 46 91.3
Ciclev10010045m.g Citrus clementina HOM05D003522 ORTHO05D003993 4.1e-15 84.7 46 91.3
Cc04_g00460 Coffea canephora HOM05D003522 ORTHO05D003993 4.1e-15 84.7 46 91.3
COL.COLO4_22865 Corchorus olitorius HOM05D003522 ORTHO05D003993 4.1e-15 84.7 46 91.3
MELO3C017504.2 Cucumis melo HOM05D003522 ORTHO05D003993 4.1e-15 84.7 46 91.3
CsaV3_1G031190 Cucumis sativus L. HOM05D003522 ORTHO05D003993 4.1e-15 84.7 46 91.3
Dinv37803 Davidia involucrata HOM05D003522 ORTHO05D003993 4.1e-15 84.7 46 91.3
Duzib150G0286 Durio zibethinus HOM05D003522 ORTHO05D003993 4.1e-15 84.7 46 91.3
Duzib168G1637 Durio zibethinus HOM05D003522 ORTHO05D003993 4.1e-15 84.7 46 91.3
Migut.D00898 Erythranthe guttata HOM05D003522 ORTHO05D003993 4.1e-15 84.7 46 91.3
Gohir.A08G234900 Gossypium hirsutum HOM05D003522 ORTHO05D003993 4.1e-15 84.7 46 91.3
Gohir.D08G255300 Gossypium hirsutum HOM05D003522 ORTHO05D003993 4.1e-15 84.7 46 91.3
Gorai.004G272400 Gossypium raimondii HOM05D003522 ORTHO05D003993 4.1e-15 84.7 46 91.3
Hma1.2p1_1104F.1_g257440 Hydrangea macrophylla HOM05D003522 ORTHO05D003993 4.1e-15 84.7 46 91.3
Nitab4.5_0000033g0430 Nicotiana tabacum HOM05D003522 ORTHO05D003993 4.1e-15 84.7 46 91.3
Nitab4.5_0000782g0190 Nicotiana tabacum HOM05D003522 ORTHO05D003993 4.1e-15 84.7 46 91.3
Os02g0126700 Oryza sativa ssp. japonica HOM05D003522 ORTHO05D003993 4.1e-15 84.7 46 91.3
Peaxi162Scf00171g00327 Petunia axillaris HOM05D003522 ORTHO05D003993 4.1e-15 84.7 46 91.3
Potri.006G174000 Populus trichocarpa HOM05D003522 ORTHO05D003993 4.1e-15 84.7 46 91.3
Potri.018G096200 Populus trichocarpa HOM05D003522 ORTHO05D003993 4.1e-15 84.7 46 91.3
Prupe.1G094500 Prunus persica HOM05D003522 ORTHO05D003993 4.1e-15 84.7 46 91.3
Prupe.4G278600 Prunus persica HOM05D003522 ORTHO05D003993 4.1e-15 84.7 46 91.3
QL02p096594 Quercus lobata HOM05D003522 ORTHO05D003993 4.1e-15 84.7 46 91.3
Sabra06G0133600 Salix brachista HOM05D003522 ORTHO05D003993 4.1e-15 84.7 46 91.3
Sed0017254 Sechium edule HOM05D003522 ORTHO05D003993 4.1e-15 84.7 46 91.3
Sc03g0004630 Simmondsia chinensis HOM05D003522 ORTHO05D003993 4.1e-15 84.7 46 91.3
Solyc03g098470.3 Solanum lycopersicum HOM05D003522 ORTHO05D003993 4.1e-15 84.7 46 91.3
Sopen03g029210 Solanum pennellii HOM05D003522 ORTHO05D003993 4.1e-15 84.7 46 91.3
PGSC0003DMG400010156 Solanum tuberosum HOM05D003522 ORTHO05D003993 4.1e-15 84.7 46 91.3
PGSC0003DMG400025548 Solanum tuberosum HOM05D003522 ORTHO05D003993 4.1e-15 84.7 46 91.3
Thecc.06G016400 Theobroma cacao HOM05D003522 ORTHO05D003993 4.1e-15 84.7 46 91.3
Thecc.09G164300 Theobroma cacao HOM05D003522 ORTHO05D003993 4.1e-15 84.7 46 91.3
TWI15G0209 Tripterygium wilfordii HOM05D003522 ORTHO05D003993 4.1e-15 84.7 46 91.3
TWI60G1574 Tripterygium wilfordii HOM05D003522 ORTHO05D003993 4.1e-15 84.7 46 91.3
TWI63G0474 Tripterygium wilfordii HOM05D003522 ORTHO05D003993 4.1e-15 84.7 46 91.3
unitig_92.g28119 Utricularia gibba HOM05D003522 ORTHO05D003993 4.1e-15 84.7 46 91.3
Zm00001eb338420 Zea mays HOM05D003522 ORTHO05D003993 4.1e-15 84.7 46 91.3
arahy.Tifrunner.gnm1.ann1.341EN6 Arachis hypogaea HOM05D003522 ORTHO05D003993 5.4e-15 84.3 46 89.1
arahy.Tifrunner.gnm1.ann1.QJ4IDW Arachis hypogaea HOM05D003522 ORTHO05D003993 5.4e-15 84.3 46 89.1
BcaC04g22886 Brassica carinata HOM05D003522 ORTHO05D003993 5.4e-15 84.3 49 85.7
Ca_06194_v3 Cicer arietinum L. HOM05D003522 ORTHO05D003993 5.4e-15 84.3 46 89.1
Glyma.04G208600 Glycine max HOM05D003522 ORTHO05D003993 5.4e-15 84.3 46 89.1
Glyma.06G157100 Glycine max HOM05D003522 ORTHO05D003993 5.4e-15 84.3 46 89.1
Glyma.13G093400 Glycine max HOM05D003522 ORTHO05D003993 5.4e-15 84.3 46 89.1
Glyma.17G067100 Glycine max HOM05D003522 ORTHO05D003993 5.4e-15 84.3 46 89.1
Lj4g0002134 Lotus japonicus HOM05D003522 ORTHO05D003993 5.4e-15 84.3 46 89.1
Lj5g0004975 Lotus japonicus HOM05D003522 ORTHO05D003993 5.4e-15 84.3 46 89.1
Lalb_Chr07g0180191 Lupinus albus HOM05D003522 ORTHO05D003993 5.4e-15 84.3 46 89.1
Lalb_Chr12g0199151 Lupinus albus HOM05D003522 ORTHO05D003993 5.4e-15 84.3 46 89.1
Lalb_Chr13g0300421 Lupinus albus HOM05D003522 ORTHO05D003993 5.4e-15 84.3 46 89.1
Medtr2g104440 Medicago truncatula HOM05D003522 ORTHO05D003993 5.4e-15 84.3 46 89.1
Medtr5g072530 Medicago truncatula HOM05D003522 ORTHO05D003993 5.4e-15 84.3 46 89.1
PSO170G2534 Papaver somniferum HOM05D003522 ORTHO05D003993 5.4e-15 84.3 46 89.1
PSO782G3457 Papaver somniferum HOM05D003522 ORTHO05D003993 5.4e-15 84.3 46 89.1
Phvul.003G149400 Phaseolus vulgaris HOM05D003522 ORTHO05D003993 5.4e-15 84.3 46 89.1
THA.LOC104803931 Tarenaya hassleriana HOM05D003522 ORTHO05D003993 5.4e-15 84.3 43 97.7
Atru.chr12.835 Acer truncatum HOM05D003522 ORTHO05D003993 7.1e-15 84.0 46 89.1
CSS0025026 Camellia sinensis var. sinensis HOM05D003522 ORTHO05D003993 7.1e-15 84.0 46 91.3
Psat6g004960 Pisum sativum HOM05D003522 ORTHO05D003993 7.1e-15 84.0 44 93.2
AagrBONN_evm.TU.Sc2ySwM_228.3104 Anthoceros agrestis HOM05D003522 ORTHO05D003993 9.2e-15 83.6 46 89.1
CiPaw.07G188400 Carya illinoinensis HOM05D003522 ORTHO05D003993 9.2e-15 83.6 46 89.1
CiPaw.08G038400 Carya illinoinensis HOM05D003522 ORTHO05D003993 9.2e-15 83.6 46 89.1
Dinv43338 Davidia involucrata HOM05D003522 ORTHO05D003993 9.2e-15 83.6 46 89.1
Migut.J01787 Erythranthe guttata HOM05D003522 ORTHO05D003993 9.2e-15 83.6 46 89.1
FvH4_7g02280 Fragaria vesca HOM05D003522 ORTHO05D003993 9.2e-15 83.6 46 89.1
FAN01G2196 Fragaria x ananassa HOM05D003522 ORTHO05D003993 9.2e-15 83.6 46 89.1
FAN06G0337 Fragaria x ananassa HOM05D003522 ORTHO05D003993 9.2e-15 83.6 46 89.1
FAN10G2139 Fragaria x ananassa HOM05D003522 ORTHO05D003993 9.2e-15 83.6 46 89.1
FAN17G0034 Fragaria x ananassa HOM05D003522 ORTHO05D003993 9.2e-15 83.6 46 89.1
FAN22G0545 Fragaria x ananassa HOM05D003522 ORTHO05D003993 9.2e-15 83.6 46 89.1
QL08p040368 Quercus lobata HOM05D003522 ORTHO05D003993 9.2e-15 83.6 46 89.1
RcHm_v2.0_Chr1g0319581 Rosa chinensis HOM05D003522 ORTHO05D003993 9.2e-15 83.6 46 89.1
RcHm_v2.0_Chr4g0403921 Rosa chinensis HOM05D003522 ORTHO05D003993 9.2e-15 83.6 46 89.1
SalBow6G5940 Salvia bowleyana HOM05D000567 ORTHO05D003993 9.2e-15 83.6 46 89.1
unitig_37.g12145 Utricularia gibba HOM05D003522 ORTHO05D003993 9.2e-15 83.6 46 89.1
CAN.G929.30 Capsicum annuum HOM05D003522 ORTHO05D003993 1.2e-14 83.2 46 89.1
Eucgr.L02749 Eucalyptus grandis HOM05D003522 ORTHO05D003993 1.2e-14 83.2 46 89.1
Hma1.2p1_1261F.1_g271100 Hydrangea macrophylla HOM05D003522 ORTHO05D003993 1.2e-14 83.2 46 89.1
Phvul.009G153200 Phaseolus vulgaris HOM05D003522 ORTHO05D003993 1.2e-14 83.2 46 87.0
AL3G53200 Arabidopsis lyrata HOM05D003522 ORTHO05D003993 1.6e-14 82.8 43 95.3
AT2G18740 Arabidopsis thaliana HOM05D003522 ORTHO05D003993 1.6e-14 82.8 43 95.3
AT4G30330 Arabidopsis thaliana HOM05D003522 ORTHO05D003993 1.6e-14 82.8 43 95.3
BcaB03g16666 Brassica carinata HOM05D003522 ORTHO05D003993 1.6e-14 82.8 43 95.3
BcaB08g34822 Brassica carinata HOM05D003522 ORTHO05D003993 1.6e-14 82.8 43 95.3
BcaC06g36458 Brassica carinata HOM05D003522 ORTHO05D003993 1.6e-14 82.8 43 95.3
A06p33110 Brassica napus HOM05D003522 ORTHO05D003993 1.6e-14 82.8 43 95.3
C03p59350 Brassica napus HOM05D003522 ORTHO05D003993 1.6e-14 82.8 43 95.3
BolC3t18199H Brassica oleracea HOM05D003522 ORTHO05D003993 1.6e-14 82.8 43 95.3
BolC7t40790H Brassica oleracea HOM05D003522 ORTHO05D003993 1.6e-14 82.8 43 95.3
BraA06t26241Z Brassica rapa HOM05D003522 ORTHO05D003993 1.6e-14 82.8 43 95.3
BraA07t27987Z Brassica rapa HOM05D003414 ORTHO05D003913 1.6e-14 82.8 43 95.3
Carub.0003s3301 Capsella rubella HOM05D003522 ORTHO05D003993 1.6e-14 82.8 43 95.3
Carub.0007s1027 Capsella rubella HOM05D003522 ORTHO05D003993 1.6e-14 82.8 43 95.3
Thhalv10022941m.g Eutrema salsugineum HOM05D003522 ORTHO05D003993 1.6e-14 82.8 43 95.3
Thhalv10026682m.g Eutrema salsugineum HOM05D003522 ORTHO05D003993 1.6e-14 82.8 43 95.3
MD13G1262900 Malus domestica HOM05D003522 ORTHO05D003993 1.6e-14 82.8 46 89.1
Oeu004017.1 Olea europaea HOM05D003522 ORTHO05D003993 1.6e-14 82.8 46 89.1
Psat6g015920 Pisum sativum HOM05D003522 ORTHO05D003993 1.6e-14 82.8 45 88.9
Sp3g32240 Schrenkiella parvula HOM05D003522 ORTHO05D003993 1.6e-14 82.8 43 95.3
Sp7g28200 Schrenkiella parvula HOM05D003522 ORTHO05D003993 1.6e-14 82.8 43 95.3
THA.LOC104803508 Tarenaya hassleriana HOM05D003522 ORTHO05D003993 1.6e-14 82.8 43 95.3
Manes.05G188200 Manihot esculenta HOM05D003522 ORTHO05D003993 2.1e-14 82.4 46 89.1
Manes.06G037450 Manihot esculenta HOM05D003522 ORTHO05D003993 2.1e-14 82.4 46 89.1
Nitab4.5_0001678g0020 Nicotiana tabacum HOM05D003522 ORTHO05D003993 2.1e-14 82.4 46 89.1
Peaxi162Scf00643g00641 Petunia axillaris HOM05D003522 ORTHO05D003993 2.1e-14 82.4 46 89.1
Solyc06g072280.3 Solanum lycopersicum HOM05D003522 ORTHO05D003993 2.1e-14 82.4 46 89.1
Sopen06g028650 Solanum pennellii HOM05D003522 ORTHO05D003993 2.1e-14 82.4 46 89.1
PGSC0003DMG400027050 Solanum tuberosum HOM05D003522 ORTHO05D003993 2.1e-14 82.4 46 89.1
SMO347G0208 Selaginella moellendorffii HOM05D003522 ORTHO05D003993 2.7e-14 82.0 46 87.0
Aa31LG8G15860 Aethionema arabicum HOM05D003522 ORTHO05D003993 3.5e-14 81.6 43 93.0
Psat6g014800 Pisum sativum HOM05D003522 ORTHO05D003993 3.5e-14 81.6 45 86.7
Sabra18G0083100 Salix brachista HOM05D003522 ORTHO05D003993 4.6e-14 81.3 44 90.9
Zm00001eb410720 Zea mays HOM05D003522 ORTHO05D003993 4.6e-14 81.3 44 93.2
HanXRQChr10g0311551 Helianthus annuus HOM05D003522 ORTHO05D003993 6.0e-14 80.9 43 93.0
Lsat_1_v5_gn_5_137520 Lactuca sativa HOM05D003522 ORTHO05D003993 6.0e-14 80.9 43 93.0
CARHR109330 Cardamine hirsuta HOM05D003522 ORTHO05D003993 7.8e-14 80.5 43 90.7
Nitab4.5_0005074g0050 Nicotiana tabacum HOM05D003522 ORTHO05D003993 7.8e-14 80.5 46 84.8
Pp3c14_15210 Physcomitrium patens HOM05D003522 ORTHO05D003993 1.3e-13 79.7 43 90.7
Pp3c2_10270 Physcomitrium patens HOM05D003522 ORTHO05D003993 1.3e-13 79.7 43 90.7
ECA234G0975 Erigeron canadensis HOM05D003522 ORTHO05D003993 1.7e-13 79.3 42 92.9
Pp3c17_6070 Physcomitrium patens HOM05D003522 ORTHO05D003993 2.3e-13 79.0 43 88.4
Psat6g005000 Pisum sativum HOM05D003522 ORTHO05D003993 2.5e-12 75.5 42 85.7
Prupe.1G136300 Prunus persica HOM05D003522 ORTHO05D003993 9.6e-12 73.6 46 78.3
Cre08.g385200 Chlamydomonas reinhardtii HOM05D003522 ORTHO05D003993 4.7e-11 71.2 43 74.4
MBI16_g00671_MAGBIO Magnolia biondii HOM05D003522 ORTHO05D003993 4.7e-11 71.2 37 91.9
DCAR_014711 Daucus carota HOM05D003522 ORTHO05D003993 1.1e-10 70.1 53 73.6
SHI02961 Sapria himalayana HOM05D003522 ORTHO05D003993 1.4e-10 69.7 74 56.8
PRCOL_00004725 Prasinoderma coloniale HOM05D003522 ORTHO05D003993 1.8e-10 69.3 46 69.6
MCO12G107 Micromonas commoda HOM05D003522 ORTHO05D003993 2.4e-10 68.9 43 76.7
C09p14220 Brassica napus HOM05D000306 ORTHO05D000410 1.7e-08 62.8 90 47.8
CsaV3_7G021700 Cucumis sativus L. HOM05D003522 ORTHO05D003993 2.2e-08 62.4 32 93.8
Manes.08G085100 Manihot esculenta HOM05D003522 ORTHO05D003993 2.2e-08 62.4 33 90.9
Zm00001eb120030 Zea mays HOM05D003522 ORTHO05D003993 2.2e-08 62.4 32 93.8
Eucgr.J03147 Eucalyptus grandis HOM05D003522 ORTHO05D003993 4.9e-08 61.2 92 44.6
ClCG06G013040 Citrullus lanatus HOM05D003522 ORTHO05D003993 8.4e-08 60.5 46 71.7
ClCG09G010690 Citrullus lanatus HOM05D003522 ORTHO05D003993 8.4e-08 60.5 46 71.7
Haze_15038 Corylus avellana HOM05D001148 ORTHO05D000960 8.4e-08 60.5 30 96.7
MELO3C013179.2 Cucumis melo HOM05D003522 ORTHO05D003993 8.4e-08 60.5 46 71.7
Nitab4.5_0004612g0030 Nicotiana tabacum HOM05D003522 ORTHO05D003993 8.4e-08 60.5 46 71.7
Hund03511 Selenicereus undatus HOM05D003522 ORTHO05D003993 8.4e-08 60.5 46 71.7
Hund19625 Selenicereus undatus HOM05D003522 ORTHO05D003993 8.4e-08 60.5 46 71.7
arahy.Tifrunner.gnm1.ann1.Z89DQ4 Arachis hypogaea HOM05D003522 ORTHO05D003993 1.1e-07 60.1 46 69.6
CSS0040441 Camellia sinensis var. sinensis HOM05D003522 ORTHO05D003993 1.4e-07 59.7 46 71.7
AUR62038785 Chenopodium quinoa HOM05D003522 ORTHO05D003993 1.4e-07 59.7 30 96.7
AUR62003643 Chenopodium quinoa HOM05D003522 ORTHO05D003993 3.2e-07 58.5 46 69.6
AUR62017953 Chenopodium quinoa HOM05D003522 ORTHO05D003993 3.2e-07 58.5 46 69.6
Lsat_1_v5_gn_1_39580 Lactuca sativa HOM05D003522 ORTHO05D003993 9.3e-07 57.0 43 72.1
vmacro18702 Vaccinium macrocarpon HOM05D003522 ORTHO05D003993 3.5e-06 55.1 40 75.0


User provided reference genes

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