Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0109G008 Amborella trichopoda HOM05D006350 ORTHO05D007850 0.0e+00 1207.6 596 100.0
MBI02_g10104_MAGBIO Magnolia biondii HOM05D006350 ORTHO05D007850 7.0e-222 774.2 579 65.8
TAR629G2651 Trochodendron aralioides HOM05D006350 ORTHO05D007850 5.8e-216 754.6 578 64.2
GSVIVG01012630001 Vitis vinifera HOM05D006350 ORTHO05D007850 2.9e-207 725.7 572 62.4
Aqoxy4G01993 Aquilegia oxysepala HOM05D006350 ORTHO05D007850 1.7e-204 716.5 576 61.1
PSO541G3631 Papaver somniferum HOM05D006350 ORTHO05D007850 2.1e-202 709.5 585 60.5
PSO675G5568 Papaver somniferum HOM05D006350 ORTHO05D007850 3.1e-201 705.7 586 59.6
Dinv20017 Davidia involucrata HOM05D006350 ORTHO05D007850 5.3e-201 704.9 576 60.8
Os07g0530100 Oryza sativa ssp. japonica HOM05D006350 ORTHO05D007850 1.5e-200 703.4 579 58.5
Zm00001eb323120 Zea mays HOM05D006350 ORTHO05D007850 7.6e-200 701.0 580 59.7
Gohir.A10G015200 Gossypium hirsutum HOM05D006350 ORTHO05D007850 1.3e-199 700.3 573 60.4
CSS0007285 Camellia sinensis var. sinensis HOM05D006350 ORTHO05D007850 2.9e-199 699.1 576 58.3
CSS0026996 Camellia sinensis var. sinensis HOM05D006350 ORTHO05D007850 2.9e-199 699.1 576 58.3
Ciclev10014587m.g Citrus clementina HOM05D006350 ORTHO05D007850 6.4e-199 698.0 570 60.5
Atru.chr10.2148 Acer truncatum HOM05D006350 ORTHO05D007850 1.1e-198 697.2 570 61.2
Gohir.D10G015200 Gossypium hirsutum HOM05D006350 ORTHO05D007850 1.9e-198 696.4 573 59.9
Gorai.011G016800 Gossypium raimondii HOM05D006350 ORTHO05D007850 1.9e-198 696.4 573 60.0
Rhsim02G0112000 Rhododendron simsii HOM05D006350 ORTHO05D007850 1.2e-197 693.7 576 59.0
CDE05G1739 Ceratophyllum demersum HOM05D006350 ORTHO05D007850 3.5e-197 692.2 579 60.1
CANSAT80G1390 Cannabis sativa HOM05D006350 ORTHO05D007850 1.0e-196 690.6 570 60.0
Glyma.04G064300 Glycine max HOM05D006350 ORTHO05D007850 2.3e-196 689.5 571 58.1
Phvul.002G048900 Phaseolus vulgaris HOM05D006350 ORTHO05D007850 3.0e-196 689.1 571 58.3
COL.COLO4_31726 Corchorus olitorius HOM05D006350 ORTHO05D007850 1.5e-195 686.8 572 59.8
Prupe.4G026100 Prunus persica HOM05D006350 ORTHO05D007850 1.9e-195 686.4 573 58.6
Thecc.06G214100 Theobroma cacao HOM05D006350 ORTHO05D007850 4.3e-195 685.3 572 59.6
CiPaw.09G087000 Carya illinoinensis HOM05D006350 ORTHO05D007850 5.6e-195 684.9 577 59.4
Manes.17G035000 Manihot esculenta HOM05D006350 ORTHO05D007850 7.3e-195 684.5 572 59.3
PGR004G2689 Punica granatum HOM05D006350 ORTHO05D007850 9.6e-195 684.1 577 57.7
vmacro15831 Vaccinium macrocarpon HOM05D006350 ORTHO05D007850 8.1e-194 681.0 660 53.5
VMungo1215G2459 Vigna mungo HOM05D006350 ORTHO05D007850 8.1e-194 681.0 575 57.9
Ca_07431_v3 Cicer arietinum L. HOM05D006350 ORTHO05D007850 2.6e-192 676.0 580 58.4
TWI63G1388 Tripterygium wilfordii HOM05D006350 ORTHO05D007850 3.4e-192 675.6 571 58.7
QL93p0073_0722 Quercus lobata HOM05D006350 ORTHO05D007850 5.8e-192 674.9 571 59.0
Solyc03g031820.4 Solanum lycopersicum HOM05D006350 ORTHO05D007850 6.4e-191 671.4 572 57.0
ECA248G2377 Erigeron canadensis HOM05D006350 ORTHO05D007850 8.4e-191 671.0 579 57.5
SGA_v2.0_scaffold114G32022 Striga asiatica HOM05D006350 ORTHO05D007850 1.9e-190 669.8 582 56.9
AUR62012643 Chenopodium quinoa HOM05D006350 ORTHO05D007850 2.4e-190 669.5 570 57.2
ClCG01G022180 Citrullus lanatus HOM05D006350 ORTHO05D007850 2.4e-190 669.5 572 56.8
Sopen03g005680 Solanum pennellii HOM05D006350 ORTHO05D007850 2.4e-190 669.5 572 57.0
RcHm_v2.0_Chr5g0003961 Rosa chinensis HOM05D006350 ORTHO05D007850 5.4e-190 668.3 572 58.7
Nitab4.5_0000091g0460 Nicotiana tabacum HOM05D006350 ORTHO05D007850 1.2e-189 667.2 569 57.5
QL05p075148 Quercus lobata HOM05D006350 ORTHO05D007850 1.6e-189 666.8 571 58.5
arahy.Tifrunner.gnm1.ann1.SC0FBD Arachis hypogaea HOM05D006350 ORTHO05D007850 4.6e-189 665.2 578 57.4
TPR.G10193 Trifolium pratense HOM05D006350 ORTHO05D007850 7.9e-189 664.5 573 58.1
MD10G1314700 Malus domestica HOM05D006350 ORTHO05D007850 1.0e-188 664.1 579 57.9
FvH4_3g02650 Fragaria vesca HOM05D006350 ORTHO05D007850 2.3e-188 662.9 573 57.9
Eucgr.D00813 Eucalyptus grandis HOM05D006350 ORTHO05D007850 3.0e-188 662.5 569 56.9
FAN21G3377 Fragaria x ananassa HOM05D006350 ORTHO05D007850 5.1e-188 661.8 572 58.0
MELO3C007370.2 Cucumis melo HOM05D006350 ORTHO05D007850 6.7e-188 661.4 572 56.3
HanXRQChr16g0504561 Helianthus annuus HOM05D006350 ORTHO05D007850 6.7e-188 661.4 574 55.9
CAN.G404.6 Capsicum annuum HOM05D006350 ORTHO05D007850 1.9e-187 659.8 578 56.2
DCAR_008125 Daucus carota HOM05D006350 ORTHO05D007850 2.5e-187 659.4 598 57.0
Medtr7g050860 Medicago truncatula HOM05D006350 ORTHO05D007850 5.6e-187 658.3 578 56.7
Migut.M01281 Erythranthe guttata HOM05D006350 ORTHO05D007850 1.3e-186 657.1 578 56.7
Potri.004G022500 Populus trichocarpa HOM05D006350 ORTHO05D007850 1.6e-186 656.8 570 57.5
Nitab4.5_0002613g0020 Nicotiana tabacum HOM05D006350 ORTHO05D007850 2.8e-186 656.0 566 56.9
Lj1g0012123 Lotus japonicus HOM05D006350 ORTHO05D007850 6.2e-186 654.8 570 57.4
MSTRG.15966 Avicennia marina HOM05D006350 ORTHO05D007850 1.8e-185 653.3 571 56.2
EL10Ac8g19892 Beta vulgaris HOM05D006350 ORTHO05D007850 3.1e-185 652.5 591 56.2
arahy.Tifrunner.gnm1.ann1.QV9JTX Arachis hypogaea HOM05D006350 ORTHO05D007850 1.5e-184 650.2 618 54.0
THA.LOC104821036 Tarenaya hassleriana HOM05D006350 ORTHO05D007850 2.6e-184 649.4 566 56.9
CsaV3_6G049260 Cucumis sativus L. HOM05D006350 ORTHO05D007850 4.5e-184 648.7 572 55.1
Peaxi162Scf00521g00815 Petunia axillaris HOM05D006350 ORTHO05D007850 1.4e-182 643.7 562 56.9
Duzib160G0024 Durio zibethinus HOM05D006350 ORTHO05D007850 2.1e-181 639.8 572 57.3
Hund23514 Selenicereus undatus HOM05D006350 ORTHO05D007850 4.6e-181 638.6 573 57.4
Lalb_Chr09g0319631 Lupinus albus HOM05D006350 ORTHO05D007850 2.8e-178 629.4 575 54.8
C03p08000 Brassica napus HOM05D006350 ORTHO05D007850 9.0e-177 624.4 578 53.6
BolC3t13297H Brassica oleracea HOM05D006350 ORTHO05D007850 4.5e-176 622.1 574 53.8
Lj1A1225T76 Lonicera japonica HOM05D006350 ORTHO05D007850 4.5e-176 622.1 572 54.2
A03p07020 Brassica napus HOM05D006350 ORTHO05D007850 5.8e-176 621.7 574 54.4
Psat3g152760 Pisum sativum HOM05D006350 ORTHO05D007850 7.6e-176 621.3 530 58.1
Sp6g28900 Schrenkiella parvula HOM05D006350 ORTHO05D007850 1.1e-174 617.5 573 54.3
Thhalv10012972m.g Eutrema salsugineum HOM05D006350 ORTHO05D007850 1.6e-173 613.6 576 53.5
Sabra04G0012300 Salix brachista HOM05D006350 ORTHO05D007850 4.6e-173 612.1 626 51.3
Carub.0006s1334 Capsella rubella HOM05D006350 ORTHO05D007850 1.0e-172 610.9 573 53.8
AL6G25990 Arabidopsis lyrata HOM05D006350 ORTHO05D007850 1.3e-172 610.5 573 53.6
SEGI_36047 Sequoiadendron giganteum HOM05D006350 ORTHO05D007850 1.8e-172 610.1 534 58.6
AT5G15170 Arabidopsis thaliana HOM05D006350 ORTHO05D007850 3.3e-171 605.9 573 52.7
Aa31LG11G14390 Aethionema arabicum HOM05D006350 ORTHO05D007850 4.8e-170 602.1 571 52.7
Haze_08403 Corylus avellana HOM05D006350 ORTHO05D007850 1.8e-169 600.1 550 55.1
Sed0019871 Sechium edule HOM05D006350 ORTHO05D007850 2.7e-165 586.3 412 66.3
Sc05g0008900 Simmondsia chinensis HOM05D006350 ORTHO05D007850 7.9e-165 584.7 383 69.7
PGSC0003DMG400024073 Solanum tuberosum HOM05D006350 ORTHO05D007850 5.1e-164 582.0 523 54.5
unitig_748.g7139 Utricularia gibba HOM05D006350 ORTHO05D007850 8.2e-162 574.7 547 51.7
FAN25G1413 Fragaria x ananassa HOM05D006350 ORTHO05D007850 2.6e-160 569.7 574 52.6
Pp3c10_12100 Physcomitrium patens HOM05D006350 ORTHO05D007850 3.8e-159 565.8 603 49.4
CARHR198140 Cardamine hirsuta HOM05D006350 ORTHO05D007850 8.5e-159 564.7 514 55.1
BcaB01g05074 Brassica carinata HOM05D006350 ORTHO05D007850 2.1e-157 560.1 573 50.1
Lsat_1_v5_gn_1_127601 Lactuca sativa HOM05D006350 ORTHO05D000125 1.5e-155 553.9 544 53.9
Mapoly0129s0047 Marchantia polymorpha HOM05D006350 ORTHO05D007850 6.7e-148 528.5 604 46.2
AUR62022012 Chenopodium quinoa HOM05D006350 ORTHO05D007850 1.7e-146 523.9 487 53.2
SMO117G0269 Selaginella moellendorffii HOM05D006350 ORTHO05D007850 7.7e-144 515.0 374 65.2
Dinv17832 Davidia involucrata HOM05D006350 ORTHO05D007850 2.4e-137 493.4 438 56.2
Hund21368 Selenicereus undatus HOM05D006350 ORTHO05D007850 2.4e-137 493.4 329 69.0
Cc02_g11700 Coffea canephora HOM05D006350 ORTHO05D007850 7.7e-136 488.4 320 69.4
Cpa.g.sc198.9 Carica papaya HOM05D006350 ORTHO05D007850 4.1e-121 439.5 574 44.1
Hund21371 Selenicereus undatus HOM05D006350 ORTHO05D007850 2.9e-106 390.2 281 65.1
Oeu051224.2 Olea europaea HOM05D006350 ORTHO05D007850 3.5e-88 330.1 560 38.9
Nn1g03636 Nelumbo nucifera HOM05D006350 ORTHO05D007850 7.8e-88 328.9 577 37.3
HPP92_017615 Vanilla planifolia HOM05D006350 ORTHO05D007850 8.7e-79 298.9 203 70.0
MBI04_g30799_MAGBIO Magnolia biondii HOM05D006350 ORTHO05D007850 3.6e-77 293.5 290 54.1
Eucgr.L01729 Eucalyptus grandis HOM05D006350 ORTHO05D007850 3.8e-74 283.5 480 37.5
MCO12G349 Micromonas commoda HOM05D006350 ORTHO05D007850 3.8e-66 256.9 423 36.9
VMungo1383G3417 Vigna mungo HOM05D006350 ORTHO05D007850 1.9e-62 244.6 175 62.3
PRCOL_00001871 Prasinoderma coloniale HOM05D006350 ORTHO05D007850 5.3e-60 236.5 367 37.1
SMO172G0198 Selaginella moellendorffii HOM05D006350 ORTHO05D007850 2.6e-59 234.2 220 54.5
Cre01.g053200 Chlamydomonas reinhardtii HOM05D006350 ORTHO05D007850 7.1e-57 226.1 501 31.9
VMungo0251G1161 Vigna mungo HOM05D006350 ORTHO05D007850 1.5e-51 208.4 129 69.0
HPP92_017616 Vanilla planifolia HOM05D006350 ORTHO05D007850 3.4e-51 207.2 282 41.8
Dinv17831 Davidia involucrata HOM05D006350 ORTHO05D007850 3.0e-47 194.1 114 76.3
Cc02_g11710 Coffea canephora HOM05D006350 ORTHO05D007850 1.7e-42 178.3 256 41.4
Nn1g00065 Nelumbo nucifera HOM05D006350 ORTHO05D007850 3.1e-28 131.0 154 46.8
CBR_g28581 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-26 125.9 132 46.2
SMO198G0039 Selaginella moellendorffii HOM05D006350 ORTHO05D007850 1.1e-25 122.5 148 44.6
Sc05g0008890 Simmondsia chinensis HOM05D006350 ORTHO05D007850 4.0e-23 114.0 148 41.2
BolC3t14124H Brassica oleracea HOM05D006350 ORTHO05D007850 1.1e-12 79.3 57 66.7
C03p17100 Brassica napus HOM05D006350 ORTHO05D007850 3.1e-12 77.8 57 64.9
Ah.15g089920 Amaranthus hybridus HOM05D007034 ORTHO05D008665 2.9e-10 71.2 244 23.4
ATR0582G190 Amborella trichopoda HOM05D007034 ORTHO05D008665 1.5e-09 68.9 227 25.6
PSO017G2510 Papaver somniferum HOM05D007034 ORTHO05D008665 1.5e-09 68.9 228 24.1
Prupe.5G138100 Prunus persica HOM05D007034 ORTHO05D008665 3.3e-09 67.8 239 22.6
Sc10g0005150 Simmondsia chinensis HOM05D007034 ORTHO05D008665 9.5e-09 66.2 197 24.4
PSO017G4759 Papaver somniferum HOM05D007034 ORTHO05D008665 1.2e-08 65.9 229 24.0
MBI11_g45190_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 1.6e-08 65.5 195 26.2
Aqoxy5G02954 Aquilegia oxysepala HOM05D007034 ORTHO05D008665 2.8e-08 64.7 192 26.0
AUR62029782 Chenopodium quinoa HOM05D007034 ORTHO05D008665 3.6e-08 64.3 202 23.3
Ca_16833_v3 Cicer arietinum L. HOM05D007034 ORTHO05D008665 3.6e-08 64.3 237 22.8
Cfa024753 Carpinus fangiana HOM05D006350 ORTHO05D007850 6.1e-08 63.5 511 21.1
Nn1g07027 Nelumbo nucifera HOM05D006350 ORTHO05D007850 1.0e-07 62.8 75 40.0
HPP92_006434 Vanilla planifolia HOM05D007034 ORTHO05D008665 1.4e-07 62.4 191 25.7
THA.LOC104818293 Tarenaya hassleriana HOM05D007034 ORTHO05D008665 1.8e-07 62.0 307 22.8
EL10Ac7g17117 Beta vulgaris HOM05D007034 ORTHO05D008665 2.3e-07 61.6 199 22.1
RcHm_v2.0_Chr7g0188231 Rosa chinensis HOM05D007034 ORTHO05D008665 3.0e-07 61.2 195 23.1
MD06G1128300 Malus domestica HOM05D007034 ORTHO05D008665 4.0e-07 60.8 197 22.3
Cfa024022 Carpinus fangiana HOM05D006350 ORTHO05D007850 6.8e-07 60.1 114 29.8
Pp3c20_13830 Physcomitrium patens HOM05D006350 ORTHO05D007850 6.8e-07 60.1 34 85.3
Thecc.03G143600 Theobroma cacao HOM05D007034 ORTHO05D008665 6.8e-07 60.1 217 24.4
FvH4_5g10030 Fragaria vesca HOM05D007034 ORTHO05D008665 8.9e-07 59.7 195 24.1
Psat7g040600 Pisum sativum HOM05D007034 ORTHO05D008665 8.9e-07 59.7 245 23.7
Duzib205G0091 Durio zibethinus HOM05D007034 ORTHO05D008665 1.2e-06 59.3 217 24.4
Sp6g35470 Schrenkiella parvula HOM05D007034 ORTHO05D008665 1.5e-06 58.9 225 23.1
AL6G17700 Arabidopsis lyrata HOM05D007034 ORTHO05D008665 2.0e-06 58.5 214 24.3
Nn3g16191 Nelumbo nucifera HOM05D007034 ORTHO05D008665 2.0e-06 58.5 197 23.4
FAN08G2641 Fragaria x ananassa HOM05D007034 ORTHO05D008665 2.6e-06 58.2 195 24.1
FAN18G0345 Fragaria x ananassa HOM05D007034 ORTHO05D008665 2.6e-06 58.2 194 24.2
Lsat_1_v5_gn_5_9280 Lactuca sativa HOM05D007034 ORTHO05D008665 2.6e-06 58.2 190 25.8
Medtr8g095490 Medicago truncatula HOM05D007034 ORTHO05D008665 2.6e-06 58.2 177 26.6
Potri.012G111800 Populus trichocarpa HOM05D007034 ORTHO05D008665 2.6e-06 58.2 197 23.4
TPR.G12786 Trifolium pratense HOM05D007034 ORTHO05D008665 2.6e-06 58.2 177 26.6
vmacro19093 Vaccinium macrocarpon HOM05D007034 ORTHO05D008665 2.6e-06 58.2 203 23.2
GSVIVG01014061001 Vitis vinifera HOM05D007034 ORTHO05D008665 2.6e-06 58.2 212 23.6
Ciclev10030559m.g Citrus clementina HOM05D007034 ORTHO05D008665 3.4e-06 57.8 206 23.8
Dinv13693 Davidia involucrata HOM05D007034 ORTHO05D008665 3.4e-06 57.8 228 22.4
Oeu012864.4 Olea europaea HOM05D007034 ORTHO05D008665 3.4e-06 57.8 324 21.3
Os04g0403400 Oryza sativa ssp. japonica HOM05D007034 ORTHO05D008665 3.4e-06 57.8 222 23.0
Aa31LG3G18970 Aethionema arabicum HOM05D007034 ORTHO05D008665 4.4e-06 57.4 169 26.0
Rhsim08G0200400 Rhododendron simsii HOM05D007034 ORTHO05D008665 4.4e-06 57.4 203 24.1
AT5G07400 Arabidopsis thaliana HOM05D007034 ORTHO05D008665 5.7e-06 57.0 220 24.5
arahy.Tifrunner.gnm1.ann1.XWK03B Arachis hypogaea HOM05D007034 ORTHO05D008665 5.7e-06 57.0 196 20.9
ECA246G4515 Erigeron canadensis HOM05D007034 ORTHO05D008665 5.7e-06 57.0 200 24.0
CANSAT56G2345 Cannabis sativa HOM05D007034 ORTHO05D008665 7.5e-06 56.6 226 23.5
Cc04_g05570 Coffea canephora HOM05D007034 ORTHO05D008665 7.5e-06 56.6 197 23.9
Nitab4.5_0000976g0250 Nicotiana tabacum HOM05D007034 ORTHO05D008665 7.5e-06 56.6 239 24.7
AagrBONN_evm.TU.Sc2ySwM_340.151 Anthoceros agrestis HOM05D007034 ORTHO05D008665 9.8e-06 56.2 205 22.9
SMO139G0138 Selaginella moellendorffii HOM05D007034 ORTHO05D008665 9.8e-06 56.2 190 22.1
PGSC0003DMG400014226 Solanum tuberosum HOM05D007034 ORTHO05D008665 9.8e-06 56.2 234 24.4
TWI23G0512 Tripterygium wilfordii HOM05D007034 ORTHO05D008665 9.8e-06 56.2 197 21.8


User provided reference genes

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