Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0097G032 Amborella trichopoda HOM05D006779 ORTHO05D008491 5.3e-111 404.4 216 100.0
GSVIVG01031784001 Vitis vinifera HOM05D006779 ORTHO05D008491 1.7e-48 196.8 247 50.2
CDE06G1966 Ceratophyllum demersum HOM05D006779 ORTHO05D008491 2.9e-48 196.1 195 61.0
Nn5g30192 Nelumbo nucifera HOM05D006779 ORTHO05D008491 4.9e-48 195.3 250 51.6
CsaV3_7G008730 Cucumis sativus L. HOM05D006779 ORTHO05D008491 4.6e-46 188.7 246 49.6
MBI02_g21199_MAGBIO Magnolia biondii HOM05D006779 ORTHO05D008491 6.0e-46 188.3 267 48.3
PGR142G0644 Punica granatum HOM05D006779 ORTHO05D008491 4.3e-44 182.2 243 46.1
QL11p037315 Quercus lobata HOM05D006779 ORTHO05D008491 1.4e-42 177.2 242 47.1
FAN20G2937 Fragaria x ananassa HOM05D006779 ORTHO05D008491 2.4e-42 176.4 245 45.3
CANSAT25G0176 Cannabis sativa HOM05D006779 ORTHO05D008491 4.0e-42 175.6 245 46.5
CiPaw.05G054000 Carya illinoinensis HOM05D006779 ORTHO05D008491 4.0e-42 175.6 245 46.9
FAN15G3147 Fragaria x ananassa HOM05D006779 ORTHO05D008491 5.2e-42 175.3 245 44.9
Sed0011670 Sechium edule HOM05D006779 ORTHO05D008491 5.2e-42 175.3 244 46.7
FAN24G0787 Fragaria x ananassa HOM05D006779 ORTHO05D008491 6.9e-42 174.9 245 44.9
Dinv42131 Davidia involucrata HOM05D006779 ORTHO05D008491 8.9e-42 174.5 252 46.8
FvH4_2g06680 Fragaria vesca HOM05D006779 ORTHO05D008491 8.9e-42 174.5 245 44.9
Haze_01903 Corylus avellana HOM05D006779 ORTHO05D008491 1.2e-41 174.1 242 47.5
Dinv23582 Davidia involucrata HOM05D006779 ORTHO05D008491 2.0e-41 173.3 249 46.6
Prupe.8G119200 Prunus persica HOM05D006779 ORTHO05D008491 2.0e-41 173.3 243 46.9
Potri.009G105500 Populus trichocarpa HOM05D006779 ORTHO05D008491 4.4e-41 172.2 241 47.3
Sabra09G0080600 Salix brachista HOM05D006779 ORTHO05D008491 4.4e-41 172.2 241 47.3
Phvul.007G247000 Phaseolus vulgaris HOM05D006779 ORTHO05D008491 9.9e-41 171.0 236 47.9
Actinidia00459 Actinidia chinensis HOM05D006779 ORTHO05D008491 1.3e-40 170.6 245 46.1
MD05G1075500 Malus domestica HOM05D006779 ORTHO05D008491 1.3e-40 170.6 242 45.5
Ah.04g152710 Amaranthus hybridus HOM05D006779 ORTHO05D008491 1.7e-40 170.2 211 52.1
arahy.Tifrunner.gnm1.ann1.8ZG09Z Arachis hypogaea HOM05D006779 ORTHO05D008491 1.7e-40 170.2 238 48.3
CSS0011815 Camellia sinensis var. sinensis HOM05D000591 ORTHO05D000579 1.7e-40 170.2 251 45.8
Cc02_g18560 Coffea canephora HOM05D006779 ORTHO05D008491 2.2e-40 169.9 252 44.0
Oeu064516.1 Olea europaea HOM05D006779 ORTHO05D008491 2.9e-40 169.5 245 45.7
RcHm_v2.0_Chr6g0258731 Rosa chinensis HOM05D006779 ORTHO05D008491 2.9e-40 169.5 245 43.7
TWI31G0027 Tripterygium wilfordii HOM05D006779 ORTHO05D008491 3.8e-40 169.1 245 44.9
Lj5C207T4 Lonicera japonica HOM05D006779 ORTHO05D008491 4.9e-40 168.7 226 48.7
Glyma.01G146900 Glycine max HOM05D006779 ORTHO05D008491 1.1e-39 167.5 236 47.5
Glyma.10G112900 Glycine max HOM05D006779 ORTHO05D008491 1.1e-39 167.5 236 47.5
Thecc.02G097400 Theobroma cacao HOM05D006779 ORTHO05D008491 1.1e-39 167.5 240 45.8
HPP92_004257 Vanilla planifolia HOM05D006779 ORTHO05D008491 1.1e-39 167.5 243 45.7
Aqoxy6G01411 Aquilegia oxysepala HOM05D006779 ORTHO05D008491 1.9e-39 166.8 249 42.6
Ciclev10029963m.g Citrus clementina HOM05D006779 ORTHO05D008491 1.9e-39 166.8 244 46.7
Atru.chr5.2773 Acer truncatum HOM05D006779 ORTHO05D008491 2.4e-39 166.4 244 46.3
Gohir.A03G191700 Gossypium hirsutum HOM05D006779 ORTHO05D008491 2.4e-39 166.4 240 45.0
Manes.15G142500 Manihot esculenta HOM05D006779 ORTHO05D008491 4.2e-39 165.6 241 45.6
arahy.Tifrunner.gnm1.ann1.T066AP Arachis hypogaea HOM05D006779 ORTHO05D008491 1.2e-38 164.1 238 47.5
Glyma.02G159500 Glycine max HOM05D006779 ORTHO05D008491 3.5e-38 162.5 236 47.0
Gorai.005G240600 Gossypium raimondii HOM05D006779 ORTHO05D008491 3.5e-38 162.5 240 44.2
Ca_18655_v3 Cicer arietinum L. HOM05D006779 ORTHO05D008491 4.6e-38 162.2 237 44.7
Lj4g0006122 Lotus japonicus HOM05D006779 ORTHO05D008491 4.6e-38 162.2 232 46.6
COL.COLO4_32686 Corchorus olitorius HOM05D006779 ORTHO05D008491 6.0e-38 161.8 237 43.9
Gohir.D02G212600 Gossypium hirsutum HOM05D006779 ORTHO05D008491 1.0e-37 161.0 240 43.8
TWI79G0004 Tripterygium wilfordii HOM05D006779 ORTHO05D008491 2.3e-37 159.8 245 43.3
Sc18g0004890 Simmondsia chinensis HOM05D006779 ORTHO05D008491 3.0e-37 159.5 242 45.5
CAN.G322.16 Capsicum annuum HOM05D006779 ORTHO05D008491 5.1e-37 158.7 238 45.8
unitig_60.g25783 Utricularia gibba HOM05D006779 ORTHO05D008491 5.1e-37 158.7 237 43.9
arahy.Tifrunner.gnm1.ann1.QJKD6Y Arachis hypogaea HOM05D006779 ORTHO05D008491 8.7e-37 157.9 238 46.6
Migut.B00314 Erythranthe guttata HOM05D006779 ORTHO05D008491 8.7e-37 157.9 249 41.0
PGSC0003DMG400025811 Solanum tuberosum HOM05D006779 ORTHO05D008491 8.7e-37 157.9 253 41.9
MSTRG.16763 Avicennia marina HOM05D006779 ORTHO05D008491 1.9e-36 156.8 239 44.8
DCAR_029018 Daucus carota HOM05D000144 ORTHO05D003364 1.9e-36 156.8 242 43.0
Eucgr.I01169 Eucalyptus grandis HOM05D006779 ORTHO05D008491 1.9e-36 156.8 244 45.1
Sopen01g050660 Solanum pennellii HOM05D006779 ORTHO05D008491 1.9e-36 156.8 253 41.9
Nitab4.5_0004334g0110 Nicotiana tabacum HOM05D006779 ORTHO05D008491 3.3e-36 156.0 253 42.7
vmacro02181 Vaccinium macrocarpon HOM05D006779 ORTHO05D008491 4.3e-36 155.6 288 39.9
Solyc01g108430.3 Solanum lycopersicum HOM05D006779 ORTHO05D008491 5.6e-36 155.2 253 41.5
Lalb_Chr09g0328181 Lupinus albus HOM05D006779 ORTHO05D008491 1.3e-35 154.1 237 45.6
Nitab4.5_0005583g0020 Nicotiana tabacum HOM05D006779 ORTHO05D008491 2.8e-35 152.9 254 42.5
SGA_v2.0_scaffold90G27693 Striga asiatica HOM05D006779 ORTHO05D008491 4.8e-35 152.1 241 42.3
SalBow6G0615 Salvia bowleyana HOM05D006779 ORTHO05D008491 8.1e-35 151.4 249 42.6
Rhsim11G0168500 Rhododendron simsii HOM05D006779 ORTHO05D008491 1.1e-34 151.0 283 39.6
SGA_v2.0_scaffold90G27688 Striga asiatica HOM05D006779 ORTHO05D008491 2.4e-34 149.8 241 41.9
TAR628G0388 Trochodendron aralioides HOM05D006779 ORTHO05D008491 2.4e-34 149.8 110 68.2
AUR62034187 Chenopodium quinoa HOM05D006779 ORTHO05D008491 1.2e-33 147.5 231 42.4
ClCG02G005780 Citrullus lanatus HOM05D006779 ORTHO05D008491 1.5e-33 147.1 287 39.0
PSO541G4058 Papaver somniferum HOM05D006779 ORTHO05D008491 2.2e-32 143.3 248 41.9
Peaxi162Scf00016g01637 Petunia axillaris HOM05D006779 ORTHO05D008491 2.2e-32 143.3 245 41.2
Aa31LG10G4420 Aethionema arabicum HOM05D006779 ORTHO05D008491 4.9e-32 142.1 238 41.6
AUR62022456 Chenopodium quinoa HOM05D006779 ORTHO05D008491 1.9e-31 140.2 271 38.4
EL10Ac3g06870 Beta vulgaris HOM05D006779 ORTHO05D008491 5.4e-31 138.7 240 41.7
Hund00325 Selenicereus undatus HOM05D006779 ORTHO05D008491 5.4e-31 138.7 239 42.7
Carub.0001s3879 Capsella rubella HOM05D006779 ORTHO05D008491 7.1e-31 138.3 234 42.3
Sp1g36470 Schrenkiella parvula HOM05D006779 ORTHO05D008491 7.1e-31 138.3 235 40.9
Lsat_1_v5_gn_5_113321 Lactuca sativa HOM05D006779 ORTHO05D008491 9.3e-31 137.9 230 43.0
PSO675G5018 Papaver somniferum HOM05D006779 ORTHO05D008491 1.6e-30 137.1 248 41.1
Psat7g121840 Pisum sativum HOM05D006779 ORTHO05D008491 2.1e-30 136.7 240 41.7
Thhalv10011741m.g Eutrema salsugineum HOM05D006779 ORTHO05D008491 3.5e-30 136.0 235 41.3
ECA234G4762 Erigeron canadensis HOM05D006779 ORTHO05D008491 4.6e-30 135.6 227 42.3
Mapoly0157s0003 Marchantia polymorpha HOM05D006779 ORTHO05D008491 1.8e-29 133.7 289 34.9
Medtr4g086640 Medicago truncatula HOM05D006779 ORTHO05D008491 6.7e-29 131.7 234 41.0
Zm00001eb373090 Zea mays HOM05D006779 ORTHO05D008491 6.7e-29 131.7 236 40.7
AT1G49590 Arabidopsis thaliana HOM05D006779 ORTHO05D008491 8.7e-29 131.3 231 41.1
BolC6t35591H Brassica oleracea HOM05D006779 ORTHO05D008491 7.4e-28 128.3 236 39.4
AL1G56960 Arabidopsis lyrata HOM05D006779 ORTHO05D008491 9.6e-28 127.9 248 36.7
HanXRQChr10g0303251 Helianthus annuus HOM05D006779 ORTHO05D008491 2.8e-27 126.3 223 42.6
A06p03540 Brassica napus HOM05D006779 ORTHO05D008491 3.6e-27 125.9 235 38.7
BraA06t23562Z Brassica rapa HOM05D006779 ORTHO05D008491 6.2e-27 125.2 236 39.4
Cpa.g.sc62.36 Carica papaya HOM05D006779 ORTHO05D008491 6.2e-27 125.2 96 62.5
BcaNung06359 Brassica carinata HOM05D006779 ORTHO05D008491 5.8e-25 118.6 233 37.3
SHI05379 Sapria himalayana HOM05D006779 ORTHO05D008491 7.6e-25 118.2 245 37.1
AagrBONN_evm.TU.Sc2ySwM_344.4302 Anthoceros agrestis HOM05D006779 ORTHO05D008491 2.9e-24 116.3 281 35.9
Pp3c14_26080 Physcomitrium patens HOM05D006779 ORTHO05D008491 2.9e-24 116.3 283 32.9
Os06g0215200 Oryza sativa ssp. japonica HOM05D006779 ORTHO05D008491 2.4e-23 113.2 66 78.8
MELO3C018438.2 Cucumis melo HOM05D006779 ORTHO05D008491 3.0e-21 106.3 203 42.4
CBR_g17671 Chara braunii HOM05D006779 ORTHO05D008491 6.7e-21 105.1 96 52.1
TPR.G23511 Trifolium pratense HOM05D006779 ORTHO05D008491 1.5e-20 104.0 66 74.2
CDE03G0027 Ceratophyllum demersum HOM05D006779 ORTHO05D008491 6.9e-18 95.1 195 42.6
SMO367G0139 Selaginella moellendorffii HOM05D006779 ORTHO05D008491 1.2e-17 94.4 254 31.9
HPP92_004235 Vanilla planifolia HOM05D006779 ORTHO05D008491 5.5e-15 85.5 197 37.6
CSS0021002 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 3.3e-12 76.3 154 39.6
FAN20G1913 Fragaria x ananassa HOM05D006779 ORTHO05D008491 1.3e-11 74.3 93 48.4
CSS0024784 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 8.2e-11 71.6 154 38.3
C06p04620 Brassica napus HOM05D006779 ORTHO05D008491 1.5e-09 67.4 193 34.2
CARHR039640 Cardamine hirsuta HOM05D006779 ORTHO05D008491 5.5e-07 58.9 98 46.9
AUR62042088 Chenopodium quinoa HOM05D006779 ORTHO05D008491 5.5e-07 58.9 156 37.2
EL10Ac9g20940 Beta vulgaris HOM05D002686 ORTHO05D003222 9.3e-07 58.2 50 62.0


User provided reference genes

Program Settings