Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0064G076 Amborella trichopoda HOM05D003939 ORTHO05D005979 0.0e+00 3002.6 1529 100.0
Nn3g17411 Nelumbo nucifera HOM05D003939 ORTHO05D005979 0.0e+00 1864.0 1517 64.3
MBI19_g03793_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D005979 0.0e+00 1846.6 1445 66.8
QL02p067905 Quercus lobata HOM05D003939 ORTHO05D005979 0.0e+00 1793.1 1579 60.4
Manes.01G097400 Manihot esculenta HOM05D003939 ORTHO05D005979 0.0e+00 1789.2 1570 60.3
Cfa007652 Carpinus fangiana HOM05D003939 ORTHO05D005979 0.0e+00 1779.2 1578 59.9
Atru.chr8.419 Acer truncatum HOM05D003939 ORTHO05D005979 0.0e+00 1772.3 1502 62.0
CSS0011135 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 0.0e+00 1771.9 1496 62.1
GSVIVG01011514001 Vitis vinifera HOM05D003939 ORTHO05D005979 0.0e+00 1766.1 1490 62.9
Aqoxy3G03594 Aquilegia oxysepala HOM05D003939 ORTHO05D005979 0.0e+00 1747.6 1462 62.9
Ciclev10010894m.g Citrus clementina HOM05D003939 ORTHO05D005979 0.0e+00 1746.1 1572 59.4
Potri.017G092600 Populus trichocarpa HOM05D003939 ORTHO05D005979 0.0e+00 1746.1 1573 59.4
Actinidia01988 Actinidia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 1744.9 1468 62.3
Dinv33821 Davidia involucrata HOM05D003939 ORTHO05D005979 0.0e+00 1742.6 1468 62.1
Thecc.04G092900 Theobroma cacao HOM05D003939 ORTHO05D005979 0.0e+00 1734.2 1570 58.5
Prupe.3G256700 Prunus persica HOM05D003939 ORTHO05D005979 0.0e+00 1733.0 1579 58.9
MD17G1057600 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 1722.6 1554 59.1
PGR083G1596 Punica granatum HOM05D003939 ORTHO05D005979 0.0e+00 1719.1 1582 58.3
Duzib264G0523 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 1717.6 1575 58.2
TWI60G0125 Tripterygium wilfordii HOM05D003939 ORTHO05D005979 0.0e+00 1717.2 1506 60.1
Sabra17G0081700 Salix brachista HOM05D003939 ORTHO05D005979 0.0e+00 1713.4 1586 58.3
MD09G1064300 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 1711.4 1563 58.4
COL.COLO4_21400 Corchorus olitorius HOM05D003939 ORTHO05D005979 0.0e+00 1709.9 1578 57.5
PSO013G0104 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 1709.1 1549 59.1
CsaV3_4G008740 Cucumis sativus L. HOM05D003939 ORTHO05D005979 0.0e+00 1706.4 1493 60.7
Eucgr.J01370 Eucalyptus grandis HOM05D003939 ORTHO05D005979 0.0e+00 1701.4 1517 59.8
Gorai.006G011000 Gossypium raimondii HOM05D003939 ORTHO05D005979 0.0e+00 1693.7 1563 57.6
Haze_14442 Corylus avellana HOM05D003939 ORTHO05D005979 0.0e+00 1689.9 1482 60.4
RcHm_v2.0_Chr2g0166131 Rosa chinensis HOM05D003939 ORTHO05D005979 0.0e+00 1689.1 1573 58.1
CANSAT64G0725 Cannabis sativa HOM05D003939 ORTHO05D005979 0.0e+00 1684.5 1478 59.9
ClCG07G007360 Citrullus lanatus HOM05D003939 ORTHO05D005979 0.0e+00 1677.5 1515 59.4
FvH4_6g47080 Fragaria vesca HOM05D003939 ORTHO05D005979 0.0e+00 1677.1 1582 57.3
FAN09G4101 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 1675.6 1582 57.3
FAN05G1397 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 1672.1 1580 57.7
Sed0008583 Sechium edule HOM05D003939 ORTHO05D005979 0.0e+00 1672.1 1568 57.5
FAN02G0596 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 1669.4 1583 57.3
Gohir.A09G010200 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 1669.4 1513 58.0
Rhsim10G0043700 Rhododendron simsii HOM05D003939 ORTHO05D005979 0.0e+00 1667.9 1637 55.8
MSTRG.3009 Avicennia marina HOM05D003939 ORTHO05D005979 0.0e+00 1666.4 1520 57.8
arahy.Tifrunner.gnm1.ann1.U2J8P8 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 1664.4 1526 58.1
Migut.H00638 Erythranthe guttata HOM05D003939 ORTHO05D005979 0.0e+00 1664.0 1528 57.9
ECA246G3607 Erigeron canadensis HOM05D003939 ORTHO05D005979 0.0e+00 1660.6 1483 59.9
AUR62018173 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 1657.1 1542 57.5
Ca_04301_v3 Cicer arietinum L. HOM05D003939 ORTHO05D005979 0.0e+00 1656.7 1574 56.5
Glyma.13G057300 Glycine max HOM05D003939 ORTHO05D005979 0.0e+00 1656.3 1583 57.0
Cc07_g03930 Coffea canephora HOM05D003939 ORTHO05D005979 0.0e+00 1655.6 1464 59.5
arahy.Tifrunner.gnm1.ann1.HNPA74 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 1651.3 1526 57.8
THA.LOC104821002 Tarenaya hassleriana HOM05D003939 ORTHO05D005979 0.0e+00 1646.3 1511 57.1
DCAR_025422 Daucus carota HOM05D003939 ORTHO05D005979 0.0e+00 1645.6 1540 57.8
EL10Ac2g03123 Beta vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 1644.0 1622 55.4
Sp6g28560 Schrenkiella parvula HOM05D003939 ORTHO05D005979 0.0e+00 1642.5 1494 57.8
Lalb_Chr06g0175001 Lupinus albus HOM05D003939 ORTHO05D005979 0.0e+00 1642.1 1510 58.3
AUR62042423 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 1641.7 1488 58.8
Solyc03g059420.4 Solanum lycopersicum HOM05D003939 ORTHO05D005979 0.0e+00 1640.9 1535 57.5
vmacro05651 Vaccinium macrocarpon HOM05D003939 ORTHO05D005979 0.0e+00 1640.9 1559 57.4
Medtr6g015060 Medicago truncatula HOM05D003939 ORTHO05D005979 0.0e+00 1640.2 1553 56.5
Sopen03g014250 Solanum pennellii HOM05D003939 ORTHO05D005979 0.0e+00 1638.6 1486 58.5
CAN.G381.1 Capsicum annuum HOM05D003939 ORTHO05D005979 0.0e+00 1638.2 1485 58.7
FAN14G2443 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 1636.3 1581 56.5
Lju41A4T71 Lonicera japonica HOM05D003939 ORTHO05D005979 0.0e+00 1632.1 1513 57.4
SGA_v2.0_scaffold52G19175 Striga asiatica HOM05D003939 ORTHO05D005979 0.0e+00 1630.9 1536 56.8
BolC2t06707H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 1626.3 1498 57.3
Phvul.004G035100 Phaseolus vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 1624.4 1553 56.9
AL6G26400 Arabidopsis lyrata HOM05D003939 ORTHO05D005979 0.0e+00 1623.6 1505 57.1
AT5G15540 Arabidopsis thaliana HOM05D003939 ORTHO05D005979 0.0e+00 1623.2 1507 57.1
Lj2g0019419 Lotus japonicus HOM05D003939 ORTHO05D005979 0.0e+00 1622.1 1561 56.6
C02p07770 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1621.7 1501 57.0
VMungo0464G1977 Vigna mungo HOM05D003939 ORTHO05D005979 0.0e+00 1621.7 1489 58.6
Nitab4.5_0002960g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 1619.4 1468 58.7
C09p61660 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1619.0 1560 56.1
BolC9t59004H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 1619.0 1560 56.1
BraA02t05278Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 1618.2 1489 57.3
A02p03080 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1616.7 1489 57.3
Thhalv10012417m.g Eutrema salsugineum HOM05D003939 ORTHO05D005979 0.0e+00 1613.2 1503 57.1
Hund13156 Selenicereus undatus HOM05D003939 ORTHO05D005979 0.0e+00 1609.0 1602 55.7
A10p23410 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1602.8 1504 57.2
BraA10t44409Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 1602.8 1504 57.2
Carub.0006s1371 Capsella rubella HOM05D003939 ORTHO05D005979 0.0e+00 1602.4 1504 56.4
HanXRQChr17g0546541 Helianthus annuus HOM05D003939 ORTHO05D005979 0.0e+00 1586.6 1512 56.9
Duzib187G1101 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 1585.5 1574 54.3
Lsat_1_v5_gn_3_98161 Lactuca sativa HOM05D003939 ORTHO05D005979 0.0e+00 1582.4 1551 56.3
Sc10g0004620 Simmondsia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 1577.4 1340 61.4
Peaxi162Scf00451g00326 Petunia axillaris HOM05D003939 ORTHO05D005979 0.0e+00 1563.5 1488 57.3
Aa31LG11G14050 Aethionema arabicum HOM05D003939 ORTHO05D005979 0.0e+00 1556.2 1507 55.5
TPR.G10018 Trifolium pratense HOM05D003939 ORTHO05D005979 0.0e+00 1555.0 1467 56.9
Zm00001eb118180 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1519.2 1529 54.5
MELO3C016065.2 Cucumis melo HOM05D003939 ORTHO05D005979 0.0e+00 1514.6 1501 56.9
Ah.10g032070 Amaranthus hybridus HOM05D003939 ORTHO05D005979 0.0e+00 1505.3 1610 52.1
Zm00001eb298600 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1491.9 1526 53.9
Nitab4.5_0001637g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 1488.0 1468 55.2
Gohir.D09G009300 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 1455.3 1351 57.2
Psat1g067400 Pisum sativum HOM05D003939 ORTHO05D005979 0.0e+00 1442.2 1614 50.4
Mapoly0011s0050 Marchantia polymorpha HOM05D003939 ORTHO05D005979 0.0e+00 1424.8 1525 51.7
SHI25772 Sapria himalayana HOM05D003939 ORTHO05D005979 0.0e+00 1412.5 1408 54.4
Pp3c15_14600 Physcomitrium patens HOM05D003939 ORTHO05D005979 0.0e+00 1392.5 1533 50.4
AagrBONN_evm.TU.Sc2ySwM_344.3096 Anthoceros agrestis HOM05D003939 ORTHO05D005979 0.0e+00 1357.4 1530 49.2
SMO116G0168 Selaginella moellendorffii HOM05D003939 ORTHO05D005979 0.0e+00 1322.4 1476 50.7
PSO063G3321 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 1268.1 1121 59.3
TAR371G0557 Trochodendron aralioides HOM05D003939 ORTHO05D005979 0.0e+00 1203.7 910 68.9
SEGI_00927 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 0.0e+00 1082.0 910 61.3
CBR_g19320 Chara braunii HOM05D003939 ORTHO05D005979 3.9e-309 1065.4 1506 41.8
HPP92_012299 Vanilla planifolia HOM05D003939 ORTHO05D005979 1.9e-308 1063.1 967 60.0
Oeu007060.1 Olea europaea HOM05D003939 ORTHO05D005979 5.5e-303 1045.0 925 59.5
Os07g0110400 Oryza sativa ssp. japonica HOM05D003939 ORTHO05D005979 2.2e-283 979.9 887 59.6
Glyma.19G029100 Glycine max HOM05D003939 ORTHO05D005979 2.9e-243 846.7 752 59.0
CARHR197770 Cardamine hirsuta HOM05D003939 ORTHO05D005979 2.5e-231 807.0 650 62.9
TAR371G1006 Trochodendron aralioides HOM05D003939 ORTHO05D005979 1.8e-181 641.3 546 59.9
HPP92_012253 Vanilla planifolia HOM05D003939 ORTHO05D005979 7.7e-164 582.8 624 51.9
SEGI_06328 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 1.4e-157 562.0 479 61.6
Psat0s5863g0080 Pisum sativum HOM05D003939 ORTHO05D005979 2.0e-148 531.6 491 57.8
Glyma.19G029000 Glycine max HOM05D003939 ORTHO05D005979 2.3e-139 501.5 586 50.0
Cpa.g.sc2744.1 Carica papaya HOM05D003939 ORTHO05D005979 9.2e-133 479.6 440 58.0
CDE04G2810 Ceratophyllum demersum HOM05D003939 ORTHO05D005979 9.5e-130 469.5 476 55.9
HPP92_012298 Vanilla planifolia HOM05D003939 ORTHO05D005979 4.7e-129 467.2 461 53.6
CiPaw.03G089600 Carya illinoinensis HOM05D003939 ORTHO05D005979 3.0e-123 448.0 397 59.9
CSS0005126 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 1.1e-122 446.0 489 53.2
PGSC0003DMG400012376 Solanum tuberosum HOM05D003939 ORTHO05D005979 1.6e-121 442.2 498 52.8
DCAR_026524 Daucus carota HOM05D003939 ORTHO05D005979 6.4e-110 403.7 560 44.8
SEGI_32509 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 6.6e-107 393.7 442 51.1
SEGI_04445 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 4.0e-104 384.4 283 67.5
HPP92_012254 Vanilla planifolia HOM05D003939 ORTHO05D005979 1.3e-99 369.4 325 59.7
CSS0039149 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 1.5e-98 365.9 452 48.7
Hma1.2p1_0481F.1_g162010 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 9.7e-82 310.1 392 48.5
Cpa.g.sc14.167 Carica papaya HOM05D003939 ORTHO05D005979 1.2e-79 303.1 302 53.6
Prupe.2G279500 Prunus persica HOM05D003939 ORTHO05D005979 1.9e-77 295.8 384 45.6
Psat0s5863g0040 Pisum sativum HOM05D003939 ORTHO05D005979 1.0e-70 273.5 261 59.8
Cre06.g278269 Chlamydomonas reinhardtii HOM05D003939 ORTHO05D005979 5.5e-69 267.7 1496 23.2
MCO01G540 Micromonas commoda HOM05D003939 ORTHO05D005979 2.3e-51 209.1 509 29.3
HPP92_012255 Vanilla planifolia HOM05D003939 ORTHO05D005979 4.5e-47 194.9 396 38.1
BolC9t58997H Brassica oleracea HOM05D003939 ORTHO05D005979 2.3e-38 166.0 120 66.7
Gohir.1Z049344 Gossypium hirsutum HOM05D003939 ORTHO05D005979 6.6e-38 164.5 176 52.8
Psat0s9359g0040 Pisum sativum HOM05D003939 ORTHO05D005979 2.3e-35 156.0 166 51.8
CSS0004390 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 3.2e-32 145.6 178 46.1
CAN.G61.23 Capsicum annuum HOM05D003939 ORTHO05D005979 6.6e-30 137.9 117 56.4
CiPaw.03G089700 Carya illinoinensis HOM05D003939 ORTHO05D005979 5.6e-29 134.8 183 42.1
Psat5g278520 Pisum sativum HOM05D003939 ORTHO05D030477 1.2e-28 133.7 98 65.3
Psat3g154360 Pisum sativum HOM05D003939 ORTHO05D030477 1.3e-25 123.6 96 63.5
Psat3g154320 Pisum sativum HOM05D003939 ORTHO05D030477 8.3e-25 120.9 97 61.9
Cpa.g.c43937 Carica papaya HOM05D003939 ORTHO05D005979 7.8e-23 114.4 70 81.4
C09p61570 Brassica napus HOM05D003939 ORTHO05D005979 1.1e-21 110.5 79 69.6
Glyma.01G130950 Glycine max HOM05D003939 ORTHO05D005979 3.3e-21 109.0 97 56.7
TPR.G3973 Trifolium pratense HOM05D003939 ORTHO05D005979 1.4e-19 103.6 148 40.5
arahy.Tifrunner.gnm1.ann1.HI697U Arachis hypogaea HOM05D001278 ORTHO05D005979 3.2e-16 92.4 79 57.0
arahy.Tifrunner.gnm1.ann1.BV8AZF Arachis hypogaea HOM05D001278 ORTHO05D004786 9.2e-16 90.9 97 48.5
TAR376G0271 Trochodendron aralioides HOM05D003939 ORTHO05D009412 2.7e-15 89.4 69 63.8
TAR376G0356 Trochodendron aralioides HOM05D003939 ORTHO05D009412 7.8e-15 87.8 69 62.3
MELO3C001621.2 Cucumis melo HOM05D003939 ORTHO05D005979 1.0e-14 87.4 79 58.2
MELO3C000805.2 Cucumis melo HOM05D003939 ORTHO05D005979 2.3e-14 86.3 89 52.8
TAR629G0495 Trochodendron aralioides HOM05D003939 ORTHO05D005979 2.3e-14 86.3 59 71.2
PSO063G0192 Papaver somniferum HOM05D001862 ORTHO05D005979 2.2e-09 69.7 93 39.8
MELO3C001721.2 Cucumis melo HOM05D003939 ORTHO05D005979 8.3e-09 67.8 51 64.7
Psat5g164760 Pisum sativum HOM05D003939 ORTHO05D005979 4.1e-08 65.5 47 61.7
Nitab4.5_0000202g0190 Nicotiana tabacum HOM05D001217 ORTHO05D001097 1.7e-06 60.1 60 46.7
Nitab4.5_0000216g0070 Nicotiana tabacum HOM05D001217 ORTHO05D001097 1.7e-06 60.1 60 46.7


User provided reference genes

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