Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G58130 Arabidopsis thaliana HOM05D006136 ORTHO05D007244 0.0e+00 1207.6 749 100.0
AL8G34230 Arabidopsis lyrata HOM05D006136 ORTHO05D007244 8.1e-292 1006.9 751 82.6
Carub.0008s1868 Capsella rubella HOM05D006136 ORTHO05D007244 1.3e-249 866.7 767 76.8
CARHR271930 Cardamine hirsuta HOM05D006136 ORTHO05D007244 3.6e-239 832.0 753 72.6
Thhalv10012942m.g Eutrema salsugineum HOM05D006136 ORTHO05D007244 5.6e-208 728.4 778 57.5
Sp6g19810 Schrenkiella parvula HOM05D006136 ORTHO05D007244 3.7e-204 715.7 767 56.8
C09p50030 Brassica napus HOM05D006136 ORTHO05D007244 1.6e-170 604.0 756 62.6
BolC9t57856H Brassica oleracea HOM05D006136 ORTHO05D007244 5.1e-169 599.0 758 62.4
BraA10t43623Z Brassica rapa HOM05D006136 ORTHO05D007244 7.4e-168 595.1 755 62.8
BcaC04g19905 Brassica carinata HOM05D006136 ORTHO05D007244 1.6e-167 594.0 750 62.9
A10p16060 Brassica napus HOM05D006136 ORTHO05D007244 1.6e-167 594.0 757 62.7
BcaB08g36165 Brassica carinata HOM05D006136 ORTHO05D007244 6.5e-164 582.0 774 61.6
Aa31LG3G13960 Aethionema arabicum HOM05D006136 ORTHO05D007244 1.6e-146 524.2 821 50.4
THA.LOC104803376 Tarenaya hassleriana HOM05D006136 ORTHO05D007244 3.2e-102 377.1 796 36.9
Cpa.g.sc46.113 Carica papaya HOM05D006136 ORTHO05D007244 7.3e-83 312.8 815 35.0
QL11p005727 Quercus lobata HOM05D006136 ORTHO05D007244 4.6e-77 293.5 809 32.8
Cfa012873 Carpinus fangiana HOM05D006136 ORTHO05D007244 1.4e-73 282.0 811 31.7
QL05p072260 Quercus lobata HOM05D000321 ORTHO05D007244 7.1e-70 269.6 403 43.9
GSVIVG01038350001 Vitis vinifera HOM05D006136 ORTHO05D007244 1.7e-68 265.0 387 44.4
Dinv12632 Davidia involucrata HOM05D006136 ORTHO05D002774 4.3e-67 260.4 400 42.5
Atru.chr7.1014 Acer truncatum HOM05D006136 ORTHO05D007244 5.6e-67 260.0 821 31.3
CiPaw.07G237600 Carya illinoinensis HOM05D006136 ORTHO05D007244 5.6e-67 260.0 807 31.6
Ciclev10007497m.g Citrus clementina HOM05D006136 ORTHO05D007244 9.0e-65 252.7 839 30.8
RcHm_v2.0_Chr4g0384741 Rosa chinensis HOM05D006136 ORTHO05D007244 9.0e-65 252.7 793 31.0
CSS0003139 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 1.7e-63 248.4 388 39.9
Lj9A583T57 Lonicera japonica HOM05D006136 ORTHO05D007244 9.3e-62 242.7 833 29.8
CSS0019621 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 1.6e-61 241.9 395 39.2
Aqoxy7G02564 Aquilegia oxysepala HOM05D006136 ORTHO05D007244 2.7e-61 241.1 836 29.7
COL.COLO4_09001 Corchorus olitorius HOM05D006136 ORTHO05D007244 1.7e-60 238.4 804 30.7
Lsat_1_v5_gn_5_82020 Lactuca sativa HOM05D006136 ORTHO05D007244 5.1e-60 236.9 373 40.8
Thecc.09G202200 Theobroma cacao HOM05D006136 ORTHO05D007244 5.1e-60 236.9 792 29.2
Prupe.1G000700 Prunus persica HOM05D006136 ORTHO05D007244 6.6e-60 236.5 793 30.3
Eucgr.C02149 Eucalyptus grandis HOM05D006136 ORTHO05D007244 1.1e-59 235.7 809 30.5
Manes.11G052190 Manihot esculenta HOM05D006136 ORTHO05D007244 1.9e-59 235.0 424 40.8
ClCG03G011600 Citrullus lanatus HOM05D006136 ORTHO05D007244 7.4e-59 233.0 798 30.1
ECA234G2139 Erigeron canadensis HOM05D006136 ORTHO05D007244 9.6e-59 232.6 792 30.7
Gohir.D08G026500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 9.6e-59 232.6 792 31.1
Glyma.09G084800 Glycine max HOM05D006136 ORTHO05D007244 1.6e-58 231.9 787 29.5
Gorai.004G023000 Gossypium raimondii HOM05D006136 ORTHO05D007244 2.8e-58 231.1 792 31.2
MD04G1000700 Malus domestica HOM05D006136 ORTHO05D007244 2.8e-58 231.1 798 29.6
Duzib170G0744 Durio zibethinus HOM05D006136 ORTHO05D007244 3.6e-58 230.7 773 30.5
FAN17G2087 Fragaria x ananassa HOM05D006136 ORTHO05D007244 4.8e-58 230.3 784 29.8
Glyma.15G193100 Glycine max HOM05D006136 ORTHO05D007244 1.4e-57 228.8 788 29.7
Manes.02G224001 Manihot esculenta HOM05D006136 ORTHO05D007244 1.8e-57 228.4 797 30.0
PGR044G0474 Punica granatum HOM05D006136 ORTHO05D007244 2.4e-57 228.0 387 41.1
Lj6g0010551 Lotus japonicus HOM05D006136 ORTHO05D007244 3.1e-57 227.6 395 41.3
MELO3C010014.2 Cucumis melo HOM05D006136 ORTHO05D007244 9.0e-57 226.1 788 29.7
TAR626G0660 Trochodendron aralioides HOM05D006136 ORTHO05D007244 2.0e-56 224.9 387 41.1
CsaV3_1G044190 Cucumis sativus L. HOM05D006136 ORTHO05D007244 7.6e-56 223.0 787 29.2
arahy.Tifrunner.gnm1.ann1.46MDAV Arachis hypogaea HOM05D006136 ORTHO05D007244 9.9e-56 222.6 789 29.2
Gohir.A08G016500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 1.7e-55 221.9 771 30.5
FAN12G3399 Fragaria x ananassa HOM05D006136 ORTHO05D007244 2.2e-55 221.5 395 37.7
Lalb_Chr08g0233201 Lupinus albus HOM05D006136 ORTHO05D007244 2.2e-55 221.5 409 38.9
Phvul.009G217200 Phaseolus vulgaris HOM05D006136 ORTHO05D007244 6.4e-55 219.9 788 28.8
TWI32G0914 Tripterygium wilfordii HOM05D006136 ORTHO05D007244 1.4e-54 218.8 795 27.9
HanXRQChr10g0309281 Helianthus annuus HOM05D006136 ORTHO05D007244 4.2e-54 217.2 384 39.1
Sc06g0001020 Simmondsia chinensis HOM05D006136 ORTHO05D007244 4.6e-53 213.8 818 29.3
Sopen07g022390 Solanum pennellii HOM05D006136 ORTHO05D007244 1.3e-52 212.2 271 45.0
MBI16_g40727_MAGBIO Magnolia biondii HOM05D006136 ORTHO05D007244 2.3e-52 211.5 436 38.5
Cc06_g23510 Coffea canephora HOM05D006136 ORTHO05D007244 5.1e-52 210.3 383 39.4
FAN12G0507 Fragaria x ananassa HOM05D006136 ORTHO05D007244 1.1e-51 209.1 779 28.6
AUR62009114 Chenopodium quinoa HOM05D000163 ORTHO05D007244 1.3e-50 205.7 829 28.1
PSO478G4925 Papaver somniferum HOM05D006136 ORTHO05D007244 1.3e-50 205.7 832 26.2
HPP92_017041 Vanilla planifolia HOM05D006136 ORTHO05D007244 8.1e-50 203.0 441 35.4
Oeu000955.1 Olea europaea HOM05D006136 ORTHO05D007244 1.4e-49 202.2 440 36.4
Psat1g019160 Pisum sativum HOM05D006136 ORTHO05D007244 5.3e-49 200.3 812 32.6
VMungo1309G0146 Vigna mungo HOM05D006136 ORTHO05D007244 5.3e-49 200.3 793 28.0
Actinidia33603 Actinidia chinensis HOM05D006136 ORTHO05D007244 6.9e-49 199.9 306 42.2
DCAR_020445 Daucus carota HOM05D006136 ORTHO05D002774 6.9e-49 199.9 842 27.3
Medtr2g048340 Medicago truncatula HOM05D006136 ORTHO05D007244 1.5e-48 198.7 406 36.7
PGSC0003DMG400013541 Solanum tuberosum HOM05D006136 ORTHO05D007244 1.5e-48 198.7 423 35.0
Migut.L01610 Erythranthe guttata HOM05D006136 ORTHO05D007244 2.6e-48 198.0 451 35.0
Os02g0138200 Oryza sativa ssp. japonica HOM05D006136 ORTHO05D007244 4.5e-48 197.2 450 36.2
Zm00001eb209220 Zea mays HOM05D006136 ORTHO05D007244 7.6e-48 196.4 388 38.1
PSO782G1690 Papaver somniferum HOM05D006136 ORTHO05D007244 1.7e-47 195.3 827 26.4
CANSAT01G2594 Cannabis sativa HOM05D006136 ORTHO05D007244 2.9e-47 194.5 779 29.7
SalBow5G5580 Salvia bowleyana HOM05D006136 ORTHO05D007244 3.8e-47 194.1 404 36.1
FAN22G1396 Fragaria x ananassa HOM05D006136 ORTHO05D007244 8.4e-47 193.0 399 36.6
EL10Ac2g03821 Beta vulgaris HOM05D006136 ORTHO05D007244 1.9e-46 191.8 772 28.2
Potri.018G151300 Populus trichocarpa HOM05D006136 ORTHO05D007244 2.5e-46 191.4 807 26.5
MSTRG.26507 Avicennia marina HOM05D006136 ORTHO05D007244 3.2e-46 191.0 417 33.3
ATR0626G098 Amborella trichopoda HOM05D006136 ORTHO05D007244 9.3e-46 189.5 265 43.8
Ca_02520_v3 Cicer arietinum L. HOM05D006136 ORTHO05D007244 1.6e-45 188.7 422 34.4
Nn5g26953 Nelumbo nucifera HOM05D006136 ORTHO05D007244 2.7e-45 188.0 405 37.3
AUR62039148 Chenopodium quinoa HOM05D006136 ORTHO05D007244 1.3e-44 185.7 843 26.6
Nitab4.5_0000807g0150 Nicotiana tabacum HOM05D006136 ORTHO05D007244 1.3e-44 185.7 822 28.7
Haze_21244 Corylus avellana HOM05D006136 ORTHO05D007244 2.3e-44 184.9 738 29.4
Sabra18G0127000 Salix brachista HOM05D006136 ORTHO05D007244 8.7e-44 183.0 780 26.3
vmacro17832 Vaccinium macrocarpon HOM05D006136 ORTHO05D007244 2.5e-43 181.4 841 26.4
unitig_699.g19255 Utricularia gibba HOM05D006136 ORTHO05D007244 3.7e-42 177.6 413 33.4
SEGI_05126 Sequoiadendron giganteum HOM05D006136 ORTHO05D007244 3.4e-40 171.0 204 46.1
Peaxi162Scf00474g00018 Petunia axillaris HOM05D006136 ORTHO05D007244 7.6e-40 169.9 788 26.6
Rhsim08G0117200 Rhododendron simsii HOM05D006136 ORTHO05D007244 1.1e-38 166.0 825 26.1
TPR.G18712 Trifolium pratense HOM05D006136 ORTHO05D007244 1.6e-37 162.2 356 36.8
PGR044G0304 Punica granatum HOM05D006136 ORTHO05D007244 1.1e-35 156.0 256 43.8
RcHm_v2.0_Chr5g0003141 Rosa chinensis HOM05D006136 ORTHO05D007244 4.8e-34 150.6 706 26.9
SGA_v2.0_scaffold21G09584 Striga asiatica HOM05D006136 ORTHO05D007244 5.3e-33 147.1 445 30.3
GSVIVG01038333001 Vitis vinifera HOM05D006136 ORTHO05D007244 8.5e-31 139.8 163 47.9
SMO367G1245 Selaginella moellendorffii HOM05D006136 ORTHO05D007244 1.1e-30 139.4 168 51.2
arahy.Tifrunner.gnm1.ann1.27MYTD Arachis hypogaea HOM05D006136 ORTHO05D007244 1.2e-29 136.0 134 56.7
Nitab4.5_0000170g0140 Nicotiana tabacum HOM05D006136 ORTHO05D007244 3.6e-29 134.4 804 25.1
arahy.Tifrunner.gnm1.ann1.QC7K1D Arachis hypogaea HOM05D006136 ORTHO05D007244 6.7e-28 130.2 90 68.9
CDE05G3219 Ceratophyllum demersum HOM05D006136 ORTHO05D007244 8.8e-28 129.8 317 33.4
arahy.Tifrunner.gnm1.ann1.Q88MA9 Arachis hypogaea HOM05D006136 ORTHO05D007244 2.5e-27 128.3 110 58.2
Solyc07g042740.3 Solanum lycopersicum HOM05D006136 ORTHO05D007244 4.3e-27 127.5 200 37.5
Mapoly0169s0023 Marchantia polymorpha HOM05D006136 ORTHO05D007244 2.2e-26 125.2 204 38.2
Lj1g0026291 Lotus japonicus HOM05D006136 ORTHO05D007244 1.2e-24 119.4 315 31.7
AagrBONN_evm.TU.Sc2ySwM_228.2439 Anthoceros agrestis HOM05D006136 ORTHO05D007244 3.0e-20 104.8 312 28.5
Pp3c1_8430 Physcomitrium patens HOM05D006136 ORTHO05D007244 3.9e-20 104.4 101 52.5
BcaC03g14120 Brassica carinata HOM05D009052 ORTHO05D011796 2.8e-18 98.2 77 71.4
C02p13590 Brassica napus HOM05D006136 ORTHO05D007244 4.8e-18 97.4 77 71.4
BolC2t07471H Brassica oleracea HOM05D006136 ORTHO05D007244 4.8e-18 97.4 77 71.4
arahy.Tifrunner.gnm1.ann1.SWI1TY Arachis hypogaea HOM05D006136 ORTHO05D007244 4.1e-17 94.4 223 34.1
FvH4_4g00130 Fragaria vesca HOM05D006136 ORTHO05D007244 7.5e-11 73.6 199 32.7
CBR_g39420 Chara braunii HOM05D006136 ORTHO05D007244 1.3e-10 72.8 54 57.4
Hma1.2p1_2895F.1_g329976 Hydrangea macrophylla HOM05D006136 ORTHO05D007244 1.3e-10 72.8 58 58.6
Glyma.07G231200 Glycine max HOM05D003235 ORTHO05D007244 4.8e-10 70.9 76 50.0
CARHR256340 Cardamine hirsuta HOM05D006136 ORTHO05D007244 1.4e-09 69.3 57 68.4
Solyc07g042700.4 Solanum lycopersicum HOM05D006136 ORTHO05D007244 1.8e-09 68.9 156 33.3
TPR.G20669 Trifolium pratense HOM05D006136 ORTHO05D007244 2.4e-09 68.6 77 50.6
Cre14.g633400 Chlamydomonas reinhardtii HOM05D006136 ORTHO05D007244 2.7e-08 65.1 113 35.4
MBI16_g40728_MAGBIO Magnolia biondii HOM05D006136 ORTHO05D007244 4.5e-08 64.3 62 51.6
Nitab4.5_0002310g0140 Nicotiana tabacum HOM05D006136 ORTHO05D007244 8.5e-07 60.1 200 33.5
A02p07950 Brassica napus HOM05D006136 ORTHO05D007244 1.1e-06 59.7 31 90.3
Sed0020259 Sechium edule HOM05D006136 ORTHO05D007244 1.5e-06 59.3 597 23.3
Lsat_1_v5_gn_5_81880 Lactuca sativa HOM05D006136 ORTHO05D007244 9.4e-06 56.6 147 29.9


User provided reference genes

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