Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G46420 Arabidopsis thaliana HOM05D007300 ORTHO05D009301 0.0e+00 1288.1 654 100.0
AL8G11990 Arabidopsis lyrata HOM05D007300 ORTHO05D009301 0.0e+00 1189.1 655 92.1
Carub.0008s0147 Capsella rubella HOM05D007300 ORTHO05D009301 0.0e+00 1176.8 652 91.1
CARHR175340 Cardamine hirsuta HOM05D007300 ORTHO05D009301 0.0e+00 1152.5 656 90.5
Sp2g11270 Schrenkiella parvula HOM05D007300 ORTHO05D009301 0.0e+00 1142.5 657 88.1
Thhalv10000812m.g Eutrema salsugineum HOM05D007300 ORTHO05D009301 0.0e+00 1138.6 655 87.6
A06p45940 Brassica napus HOM05D007300 ORTHO05D009301 0.0e+00 1109.4 658 85.1
BolC7t43517H Brassica oleracea HOM05D007300 ORTHO05D009301 0.0e+00 1101.7 657 85.1
C07p29650 Brassica napus HOM05D007300 ORTHO05D009301 0.0e+00 1097.0 657 84.8
BraA06t27457Z Brassica rapa HOM05D007300 ORTHO05D009301 0.0e+00 1077.0 641 85.0
Aa31LG9G6430 Aethionema arabicum HOM05D007300 ORTHO05D009301 4.7e-296 1020.8 665 77.7
THA.LOC104827733 Tarenaya hassleriana HOM05D007300 ORTHO05D009301 4.5e-262 907.9 665 70.5
Cfa001024 Carpinus fangiana HOM05D007300 ORTHO05D009301 3.4e-185 652.5 678 53.1
CiPaw.10G096200 Carya illinoinensis HOM05D007300 ORTHO05D009301 3.8e-184 649.0 675 51.4
FvH4_3g06410 Fragaria vesca HOM05D007300 ORTHO05D009301 5.4e-183 645.2 670 51.9
QL05p060322 Quercus lobata HOM05D007300 ORTHO05D009301 7.8e-182 641.3 616 55.2
RcHm_v2.0_Chr5g0012901 Rosa chinensis HOM05D007300 ORTHO05D009301 3.0e-181 639.4 669 51.0
Potri.001G353800 Populus trichocarpa HOM05D007300 ORTHO05D009301 3.9e-181 639.0 614 54.6
Prupe.4G073700 Prunus persica HOM05D007300 ORTHO05D009301 3.9e-181 639.0 679 50.7
Thecc.06G157700 Theobroma cacao HOM05D007300 ORTHO05D009301 2.5e-180 636.3 678 52.1
FAN21G2574 Fragaria x ananassa HOM05D007300 ORTHO05D009301 4.3e-180 635.6 669 51.1
Gorai.011G040700 Gossypium raimondii HOM05D007300 ORTHO05D009301 2.1e-179 633.3 676 51.6
Gohir.D10G038600 Gossypium hirsutum HOM05D007300 ORTHO05D009301 6.2e-179 631.7 676 51.5
MD05G1291800 Malus domestica HOM05D007300 ORTHO05D009301 2.6e-177 626.3 698 49.3
Dinv32299 Davidia involucrata HOM05D007300 ORTHO05D009301 7.6e-177 624.8 668 50.6
Ciclev10014510m.g Citrus clementina HOM05D007300 ORTHO05D009301 1.7e-176 623.6 678 51.3
GSVIVG01021378001 Vitis vinifera HOM05D007300 ORTHO05D009301 2.4e-175 619.8 676 50.0
TWI73G0852 Tripterygium wilfordii HOM05D007300 ORTHO05D009301 1.6e-174 617.1 639 50.5
COL.COLO4_22798 Corchorus olitorius HOM05D007300 ORTHO05D009301 2.1e-174 616.7 679 51.1
Cpa.g.sc17.110 Carica papaya HOM05D007300 ORTHO05D009301 3.5e-174 615.9 604 53.5
FAN11G2841 Fragaria x ananassa HOM05D007300 ORTHO05D009301 3.5e-174 615.9 731 47.6
Gohir.A10G037600 Gossypium hirsutum HOM05D007300 ORTHO05D009301 1.3e-173 614.0 676 50.7
CANSAT35G1474 Cannabis sativa HOM05D007300 ORTHO05D009301 9.6e-172 607.8 696 51.4
Sabra16G0232700 Salix brachista HOM05D007300 ORTHO05D009301 2.8e-171 606.3 634 51.4
Atru.chr10.1398 Acer truncatum HOM05D007300 ORTHO05D009301 1.8e-170 603.6 568 55.3
Manes.17G064900 Manihot esculenta HOM05D007300 ORTHO05D009301 2.4e-170 603.2 617 51.7
Haze_05485 Corylus avellana HOM05D007300 ORTHO05D009301 3.4e-169 599.4 777 45.9
TAR627G1006 Trochodendron aralioides HOM05D007300 ORTHO05D009301 9.9e-169 597.8 679 48.9
Atru.chr10.1407 Acer truncatum HOM05D007300 ORTHO05D009301 1.3e-168 597.4 563 54.7
Nitab4.5_0003714g0040 Nicotiana tabacum HOM05D007300 ORTHO05D009301 4.9e-168 595.5 680 49.3
CSS0020184 Camellia sinensis var. sinensis HOM05D007300 ORTHO05D009301 1.6e-166 590.5 674 48.7
Actinidia19486 Actinidia chinensis HOM05D007300 ORTHO05D009301 3.5e-166 589.3 673 49.6
Nitab4.5_0001283g0060 Nicotiana tabacum HOM05D007300 ORTHO05D009301 3.0e-165 586.3 673 49.2
HanXRQChr04g0119571 Helianthus annuus HOM05D007300 ORTHO05D009301 5.1e-165 585.5 656 50.0
ClCG03G007190 Citrullus lanatus HOM05D007300 ORTHO05D009301 2.5e-164 583.2 676 48.7
Lalb_Chr13g0295471 Lupinus albus HOM05D007300 ORTHO05D009301 7.4e-164 581.6 670 47.9
PGSC0003DMG400003073 Solanum tuberosum HOM05D007300 ORTHO05D009301 7.4e-164 581.6 602 51.8
Aqoxy1G01857 Aquilegia oxysepala HOM05D007300 ORTHO05D009301 9.6e-164 581.3 674 47.0
Eucgr.D00343 Eucalyptus grandis HOM05D007300 ORTHO05D009301 9.6e-164 581.3 585 52.5
ECA236G2360 Erigeron canadensis HOM05D007300 ORTHO05D009301 2.4e-162 576.6 659 49.3
Lsat_1_v5_gn_7_31040 Lactuca sativa HOM05D007300 ORTHO05D009301 1.2e-161 574.3 600 50.7
CsaV3_1G032780 Cucumis sativus L. HOM05D007300 ORTHO05D009301 1.5e-161 573.9 663 48.9
CAN.G257.51 Capsicum annuum HOM05D007300 ORTHO05D009301 3.4e-161 572.8 610 51.0
Solyc02g071280.3 Solanum lycopersicum HOM05D007300 ORTHO05D009301 4.5e-161 572.4 615 51.1
Peaxi162Scf00649g00027 Petunia axillaris HOM05D007300 ORTHO05D009301 7.6e-161 571.6 614 50.8
Sopen02g020340 Solanum pennellii HOM05D007300 ORTHO05D009301 3.8e-160 569.3 614 50.8
Oeu021524.1 Olea europaea HOM05D007300 ORTHO05D009301 4.2e-159 565.8 607 50.1
PSO541G4163 Papaver somniferum HOM05D007300 ORTHO05D009301 4.2e-159 565.8 602 49.0
Glyma.08G121900 Glycine max HOM05D007300 ORTHO05D009301 9.3e-159 564.7 612 47.9
arahy.Tifrunner.gnm1.ann1.D64P8M Arachis hypogaea HOM05D007300 ORTHO05D009301 1.3e-157 560.8 615 48.8
Duzib235G1110 Durio zibethinus HOM05D007300 ORTHO05D009301 2.3e-157 560.1 677 46.7
Glyma.05G164500 Glycine max HOM05D007300 ORTHO05D009301 3.9e-157 559.3 631 47.7
Medtr8g088030 Medicago truncatula HOM05D007300 ORTHO05D009301 1.1e-156 557.8 666 45.8
arahy.Tifrunner.gnm1.ann1.FQ35JE Arachis hypogaea HOM05D007300 ORTHO05D009301 2.5e-156 556.6 627 47.8
Lj4g0024386 Lotus japonicus HOM05D007300 ORTHO05D009301 1.6e-155 553.9 639 47.6
Sc05g0006590 Simmondsia chinensis HOM05D007300 ORTHO05D009301 3.7e-155 552.7 673 45.6
Ca_17871_v3 Cicer arietinum L. HOM05D007300 ORTHO05D009301 1.8e-154 550.4 596 48.3
Phvul.002G244500 Phaseolus vulgaris HOM05D007300 ORTHO05D009301 2.2e-152 543.5 582 48.8
TPR.G6793 Trifolium pratense HOM05D007300 ORTHO05D009301 3.8e-152 542.7 612 46.4
SalBow8G1735 Salvia bowleyana HOM05D007300 ORTHO05D009301 1.4e-151 540.8 623 49.1
Lj1C1181T32 Lonicera japonica HOM05D007300 ORTHO05D009301 9.3e-151 538.1 605 49.4
PGR044G1273 Punica granatum HOM05D007300 ORTHO05D009301 2.7e-150 536.6 579 48.5
VMungo0251G3397 Vigna mungo HOM05D007300 ORTHO05D009301 4.6e-150 535.8 570 49.5
Migut.M00959 Erythranthe guttata HOM05D007300 ORTHO05D009301 1.5e-148 530.8 663 46.3
Nn3g20905 Nelumbo nucifera HOM05D007300 ORTHO05D009301 1.5e-148 530.8 618 47.1
DCAR_027959 Daucus carota HOM05D007300 ORTHO05D009301 2.5e-148 530.0 609 47.6
AUR62027555 Chenopodium quinoa HOM05D007300 ORTHO05D009301 1.6e-147 527.3 612 46.6
Psat7g066760 Pisum sativum HOM05D007300 ORTHO05D009301 1.6e-147 527.3 642 44.2
SGA_v2.0_scaffold1G00132 Striga asiatica HOM05D007300 ORTHO05D009301 3.1e-146 523.1 665 45.1
MBI10_g02388_MAGBIO Magnolia biondii HOM05D007300 ORTHO05D009301 3.8e-144 516.2 654 44.5
AUR62035801 Chenopodium quinoa HOM05D007300 ORTHO05D009301 1.1e-143 514.6 612 46.4
FAN16G1565 Fragaria x ananassa HOM05D007300 ORTHO05D009301 5.0e-128 462.6 478 51.5
EL10Ac8g19794 Beta vulgaris HOM05D007300 ORTHO05D009301 2.3e-125 453.8 617 42.9
HPP92_023296 Vanilla planifolia HOM05D007300 ORTHO05D009301 4.4e-124 449.5 605 39.7
ATR1153G036 Amborella trichopoda HOM05D007300 ORTHO05D009301 7.4e-124 448.7 630 39.8
Sed0024786 Sechium edule HOM05D007300 ORTHO05D009301 3.1e-106 390.2 457 48.8
PSO675G3105 Papaver somniferum HOM05D007300 ORTHO05D009301 8.6e-104 382.1 360 54.4
unitig_92.g28150 Utricularia gibba HOM05D007300 ORTHO05D009301 2.0e-100 370.9 428 46.0
SEGI_38698 Sequoiadendron giganteum HOM05D007300 ORTHO05D009301 2.0e-92 344.4 517 34.8
HPP92_023271 Vanilla planifolia HOM05D007300 ORTHO05D009301 1.3e-83 315.1 595 31.9
Mapoly0019s0078 Marchantia polymorpha HOM05D007300 ORTHO05D009301 1.5e-76 291.6 736 27.3
Zm00001eb296050 Zea mays HOM05D007300 ORTHO05D009301 7.8e-73 279.3 342 41.8
MELO3C002704.2 Cucumis melo HOM05D007300 ORTHO05D009301 1.6e-70 271.6 351 44.2
CDE06G2820 Ceratophyllum demersum HOM05D007300 ORTHO05D009301 1.4e-69 268.5 321 45.2
AagrBONN_evm.TU.Sc2ySwM_228.1844 Anthoceros agrestis HOM05D007300 ORTHO05D004905 2.4e-69 267.7 521 32.8
Pp3c15_14250 Physcomitrium patens HOM05D007300 ORTHO05D009301 2.9e-67 260.8 534 30.3
Os05g0566300 Oryza sativa ssp. japonica HOM05D007300 ORTHO05D009301 2.4e-58 231.1 240 45.8
Zm00001eb349440 Zea mays HOM05D007300 ORTHO05D009301 4.9e-43 180.3 176 50.0
Gorai.004G093400 Gossypium raimondii HOM05D007300 ORTHO05D009301 3.0e-40 171.0 131 63.4
Gohir.D08G088700 Gossypium hirsutum HOM05D007300 ORTHO05D009301 3.3e-39 167.5 131 62.6
SEGI_17563 Sequoiadendron giganteum HOM05D007300 ORTHO05D009301 2.5e-34 151.4 114 57.9
THA.LOC104798460 Tarenaya hassleriana HOM05D007300 ORTHO05D009301 3.3e-31 141.0 120 58.3
MCO05G669 Micromonas commoda HOM05D007300 ORTHO05D009301 6.7e-24 116.7 228 31.1
Zm00001eb184690 Zea mays HOM05D007300 ORTHO05D009301 3.2e-18 97.8 83 48.2
Cre03.g191950 Chlamydomonas reinhardtii HOM05D007300 ORTHO05D009301 7.9e-17 93.2 200 32.0
CDE06G1765 Ceratophyllum demersum HOM05D007300 ORTHO05D009301 1.0e-11 76.3 159 28.9
Sc24g0002980 Simmondsia chinensis HOM05D003927 ORTHO05D004905 5.2e-08 63.9 145 23.4
Duzib248G0257 Durio zibethinus HOM05D003927 ORTHO05D004905 1.1e-07 62.8 259 20.8
Gohir.A12G048400 Gossypium hirsutum HOM05D003927 ORTHO05D004905 1.1e-07 62.8 224 20.5
CAN.G149.2 Capsicum annuum HOM05D003927 ORTHO05D004905 1.5e-07 62.4 226 21.7
arahy.Tifrunner.gnm1.ann1.YAS9I4 Arachis hypogaea HOM05D003927 ORTHO05D004905 5.7e-07 60.5 129 24.0
MSTRG.7601 Avicennia marina HOM05D003927 ORTHO05D004905 5.7e-07 60.5 129 24.0
Medtr4g094668 Medicago truncatula HOM05D003927 ORTHO05D004905 5.7e-07 60.5 129 23.3
Hund12931 Selenicereus undatus HOM05D003927 ORTHO05D004905 5.7e-07 60.5 144 22.9
Cc00_g22880 Coffea canephora HOM05D003927 ORTHO05D004905 7.4e-07 60.1 273 20.1
Peaxi162Scf00199g00517 Petunia axillaris HOM05D003927 ORTHO05D004905 7.4e-07 60.1 226 20.8
Solyc02g068530.4 Solanum lycopersicum HOM05D003927 ORTHO05D004905 7.4e-07 60.1 226 20.8
Sopen02g017670 Solanum pennellii HOM05D003927 ORTHO05D004905 7.4e-07 60.1 226 20.8
PGSC0003DMG400010448 Solanum tuberosum HOM05D003927 ORTHO05D004905 7.4e-07 60.1 226 20.8
Thecc.02G005900 Theobroma cacao HOM05D003927 ORTHO05D004905 7.4e-07 60.1 129 22.5
RcHm_v2.0_Chr5g0020631 Rosa chinensis HOM05D003927 ORTHO05D004905 9.7e-07 59.7 129 23.3
Ca_18249_v3 Cicer arietinum L. HOM05D003927 ORTHO05D004905 1.3e-06 59.3 129 24.0
arahy.Tifrunner.gnm1.ann1.QMDN7F Arachis hypogaea HOM05D003927 ORTHO05D004905 1.7e-06 58.9 129 24.0
Gohir.D12G047200 Gossypium hirsutum HOM05D003927 ORTHO05D004905 1.7e-06 58.9 224 19.6
Gorai.008G049800 Gossypium raimondii HOM05D003927 ORTHO05D004905 2.2e-06 58.5 223 19.7
Nitab4.5_0000443g0090 Nicotiana tabacum HOM05D003927 ORTHO05D004905 2.2e-06 58.5 140 23.6
Nitab4.5_0006246g0020 Nicotiana tabacum HOM05D003927 ORTHO05D004905 2.2e-06 58.5 140 23.6
TPR.G2935 Trifolium pratense HOM05D003927 ORTHO05D004905 2.8e-06 58.2 128 23.4
Oeu058944.1 Olea europaea HOM05D003927 ORTHO05D004905 3.7e-06 57.8 129 23.3
COL.COLO4_17634 Corchorus olitorius HOM05D003927 ORTHO05D004905 4.8e-06 57.4 129 22.5
Gohir.A03G217900 Gossypium hirsutum HOM05D003927 ORTHO05D004905 4.8e-06 57.4 129 22.5
SalBow8G3138 Salvia bowleyana HOM05D003927 ORTHO05D004905 4.8e-06 57.4 96 28.1
Duzib132G1257 Durio zibethinus HOM05D003927 ORTHO05D004905 8.2e-06 56.6 129 21.7
Manes.03G074000 Manihot esculenta HOM05D003927 ORTHO05D004905 8.2e-06 56.6 96 29.2


User provided reference genes

Program Settings