Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 0.0e+00 1174.8 603 100.0
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 0.0e+00 1078.9 619 90.5
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 1.6e-311 1072.0 616 89.9
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 1.5e-280 969.1 612 82.4
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 1.5e-280 969.1 612 82.4
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 1.0e-273 946.4 613 80.4
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 1.5e-267 926.0 604 80.6
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 1.8e-265 919.1 605 78.7
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 4.0e-265 917.9 605 78.7
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 4.0e-265 917.9 605 78.7
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 1.1e-259 899.8 605 77.7
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 4.3e-259 897.9 605 77.5
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 3.6e-258 894.8 608 77.8
Aa31LG9G660 Aethionema arabicum HOM05D004635 ORTHO05D005899 2.3e-257 892.1 608 76.5
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 3.4e-256 888.3 605 77.9
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 2.6e-240 835.5 612 73.0
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 5.6e-235 817.8 619 69.8
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 1.6e-226 789.6 601 69.6
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 2.1e-221 772.7 612 68.1
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 1.6e-210 736.5 625 62.4
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 9.0e-209 730.7 639 61.8
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 4.5e-208 728.4 615 62.9
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 1.0e-207 727.2 625 61.8
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 2.3e-204 716.1 633 60.2
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 6.3e-202 708.0 619 61.2
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 8.2e-202 707.6 622 61.4
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 1.1e-201 707.2 626 61.2
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 3.1e-201 705.7 628 59.9
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 9.1e-201 704.1 624 59.3
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 5.9e-200 701.4 624 59.1
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 7.7e-200 701.0 623 60.5
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 1.3e-199 700.3 625 60.8
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 3.8e-199 698.7 625 60.8
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 5.0e-199 698.4 620 60.5
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 1.2e-197 693.7 628 60.8
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 6.1e-197 691.4 613 63.3
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 7.9e-197 691.0 623 60.0
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 3.9e-196 688.7 622 58.0
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 5.1e-196 688.3 627 60.0
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 6.3e-194 681.4 626 58.8
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 8.2e-194 681.0 631 59.1
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 3.5e-192 675.6 614 59.4
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.3e-191 673.7 616 59.6
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.7e-191 673.3 616 59.1
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 2.9e-191 672.5 614 59.3
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 2.9e-191 672.5 637 57.3
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 5.0e-191 671.8 624 58.8
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 8.5e-191 671.0 612 60.8
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.9e-190 669.8 614 59.1
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 1.9e-190 669.8 623 58.7
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 1.2e-189 667.2 618 58.3
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 1.6e-189 666.8 607 58.6
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 3.0e-188 662.5 627 58.4
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 5.7e-187 658.3 621 57.8
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 9.7e-187 657.5 616 58.4
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 1.7e-186 656.8 616 58.0
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 1.2e-184 650.6 639 56.2
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 1.2e-184 650.6 634 56.3
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 4.5e-184 648.7 635 57.2
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 5.9e-184 648.3 624 58.5
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 1.0e-183 647.5 622 58.7
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 6.5e-183 644.8 602 56.8
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 1.1e-182 644.0 606 58.3
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 1.5e-182 643.7 606 57.9
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 1.9e-182 643.3 633 55.8
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 2.5e-182 642.9 613 57.9
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 3.2e-182 642.5 598 56.7
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 4.2e-182 642.1 607 56.5
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 7.2e-182 641.3 606 57.8
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 1.2e-181 640.6 595 58.2
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 2.7e-181 639.4 605 58.8
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 2.7e-181 639.4 597 58.8
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 3.6e-181 639.0 628 56.4
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 3.6e-181 639.0 607 57.5
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 6.1e-181 638.3 634 54.7
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 8.0e-181 637.9 618 56.8
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 1.0e-180 637.5 619 55.6
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 2.3e-180 636.3 637 55.7
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 1.5e-179 633.6 621 57.0
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 2.0e-179 633.3 600 58.8
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 7.5e-179 631.3 626 55.0
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 9.7e-179 630.9 640 55.6
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 9.7e-179 630.9 616 57.6
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 3.7e-178 629.0 614 56.0
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 3.7e-178 629.0 628 54.5
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 6.3e-178 628.2 635 55.3
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 6.3e-178 628.2 637 55.3
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 6.3e-178 628.2 620 56.0
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 2.4e-177 626.3 612 55.7
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 4.1e-177 625.5 635 54.8
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 5.3e-177 625.2 612 55.4
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 1.2e-176 624.0 614 55.5
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 7.7e-176 621.3 607 56.0
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 7.7e-176 621.3 589 56.9
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 8.5e-175 617.8 607 55.7
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 1.1e-174 617.5 616 55.8
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 4.2e-174 615.5 601 56.9
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 7.2e-174 614.8 599 56.6
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 2.1e-173 613.2 619 54.6
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 1.0e-172 610.9 603 54.7
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 3.0e-172 609.4 601 56.1
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 9.8e-171 604.4 510 62.5
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.4e-169 599.7 546 59.0
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 5.4e-169 598.6 634 53.5
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 2.3e-164 583.2 623 53.1
ATR0064G111 Amborella trichopoda HOM05D004635 ORTHO05D005899 2.0e-160 570.1 617 52.2
Carub.0004s0410 Capsella rubella HOM05D004635 ORTHO05D005899 8.0e-157 558.1 507 62.1
C06p19650 Brassica napus HOM05D004635 ORTHO05D005899 1.1e-153 547.7 411 72.0
CiPaw.11G137400 Carya illinoinensis HOM05D004635 ORTHO05D005899 4.6e-152 542.3 529 57.3
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 6.6e-151 538.5 637 49.3
Os02g0114700 Oryza sativa ssp. japonica HOM05D004635 ORTHO05D005899 9.2e-145 518.1 574 49.1
Oeu011058.1 Olea europaea HOM05D004635 ORTHO05D005899 1.5e-142 510.8 617 48.9
Glyma.05G206400 Glycine max HOM05D004635 ORTHO05D005899 1.1e-140 504.6 551 52.8
Zm00001eb209610 Zea mays HOM05D004635 ORTHO05D005899 1.0e-135 488.0 582 47.6
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 1.7e-135 487.3 513 52.8
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 1.5e-134 484.2 669 43.6
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 6.2e-133 478.8 598 48.5
Actinidia14552 Actinidia chinensis HOM05D004635 ORTHO05D005899 1.3e-122 444.5 635 45.8
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 2.1e-120 437.2 479 54.9
BolC6t37157H Brassica oleracea HOM05D004635 ORTHO05D005899 1.8e-116 424.1 290 76.9
Zm00001eb229850 Zea mays HOM05D004635 ORTHO05D005899 1.3e-114 417.9 505 48.5
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 6.0e-112 409.1 438 56.8
BolC9t58686H Brassica oleracea HOM05D004635 ORTHO05D005899 8.7e-111 405.2 421 58.0
RcHm_v2.0_Chr7g0211921 Rosa chinensis HOM05D004635 ORTHO05D005899 5.3e-108 396.0 397 57.4
C09p58220 Brassica napus HOM05D000111 ORTHO05D000134 9.0e-108 395.2 438 56.2
Pp3c2_34320 Physcomitrium patens HOM05D004635 ORTHO05D005899 4.6e-104 382.9 662 39.4
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 1.9e-102 377.5 535 46.5
BolC6t37158H Brassica oleracea HOM05D004635 ORTHO05D005899 6.2e-101 372.5 239 79.1
Migut.A00784 Erythranthe guttata HOM05D004635 ORTHO05D005899 4.2e-97 359.8 417 49.6
AagrBONN_evm.TU.Sc2ySwM_362.355 Anthoceros agrestis HOM05D004635 ORTHO05D005899 6.7e-95 352.4 642 36.4
SMO171G0086 Selaginella moellendorffii HOM05D004635 ORTHO05D005899 6.5e-90 335.9 598 37.8
Dinv37658 Davidia involucrata HOM05D004635 ORTHO05D005899 7.2e-89 332.4 336 53.6
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 8.8e-79 298.9 359 49.0
FAN28G2416 Fragaria x ananassa HOM05D004635 ORTHO05D005899 8.8e-79 298.9 359 49.0
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 6.3e-77 292.7 435 43.2
BcaC08g44514 Brassica carinata HOM05D004635 ORTHO05D005899 1.0e-74 285.4 148 87.8
Dinv37657 Davidia involucrata HOM05D004635 ORTHO05D005899 7.2e-73 279.3 241 61.0
Mapoly0033s0014 Marchantia polymorpha HOM05D004635 ORTHO05D005899 1.0e-71 275.4 554 36.3
BcaC08g44517 Brassica carinata HOM05D004635 ORTHO05D005899 6.3e-69 266.2 256 61.7
C06p19660 Brassica napus HOM05D004635 ORTHO05D005899 7.0e-68 262.7 156 85.9
CBR_g50931 Chara braunii HOM05D004635 ORTHO05D005899 6.1e-64 249.6 765 29.3
RcHm_v2.0_Chr7g0211961 Rosa chinensis HOM05D004635 ORTHO05D005899 4.5e-59 233.4 203 61.6
PRCOL_00006831 Prasinoderma coloniale HOM05D004635 ORTHO05D005899 2.3e-42 177.9 576 29.3
MCO14G249 Micromonas commoda HOM05D004635 ORTHO05D005899 1.9e-41 174.9 531 28.6
Cre01.g031750 Chlamydomonas reinhardtii HOM05D004635 ORTHO05D005899 4.0e-39 167.2 560 28.4
QL12p018319 Quercus lobata HOM05D004635 ORTHO05D005899 9.8e-38 162.5 330 34.8
VMungo1127G2192 Vigna mungo HOM05D004635 ORTHO05D005899 9.2e-36 156.0 182 47.8
EL10Ac8g19215 Beta vulgaris HOM05D000238 ORTHO05D001043 3.0e-18 97.8 83 54.2
Lj2C188G12 Lonicera japonica HOM05D004635 ORTHO05D005899 1.5e-17 95.5 259 30.9
Solyc12g015770.3 Solanum lycopersicum HOM05D000074 ORTHO05D001262 1.9e-17 95.1 60 75.0
AL4G15290 Arabidopsis lyrata HOM05D004635 ORTHO05D079484 3.6e-16 90.9 100 63.0
EL10Ac5g10794 Beta vulgaris HOM05D004635 ORTHO05D005899 3.8e-13 80.9 64 64.1
Lj2C188G13 Lonicera japonica HOM05D004635 ORTHO05D005899 2.7e-11 74.7 78 51.3
Sopen12g007660 Solanum pennellii HOM05D000006 ORTHO05D000695 9.0e-07 59.7 41 70.7
arahy.Tifrunner.gnm1.ann1.CCN99U Arachis hypogaea HOM05D004635 ORTHO05D085572 1.2e-06 59.3 43 62.8


User provided reference genes

Program Settings