Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G15540 Arabidopsis thaliana HOM05D003939 ORTHO05D005979 0.0e+00 3575.8 1847 100.0
AL6G26400 Arabidopsis lyrata HOM05D003939 ORTHO05D005979 0.0e+00 3435.6 1849 96.2
Carub.0006s1371 Capsella rubella HOM05D003939 ORTHO05D005979 0.0e+00 3252.6 1848 91.1
Thhalv10012417m.g Eutrema salsugineum HOM05D003939 ORTHO05D005979 0.0e+00 3155.9 1851 88.0
Sp6g28560 Schrenkiella parvula HOM05D003939 ORTHO05D005979 0.0e+00 3128.6 1861 87.3
C09p61660 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 3083.9 1853 85.6
BolC9t59004H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 3083.9 1853 85.6
A10p23410 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 3066.6 1855 85.5
BraA10t44409Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 3066.6 1855 85.5
C02p07770 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 3065.0 1859 85.7
A02p03080 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 3063.5 1855 86.3
BolC2t06707H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 3041.5 1863 85.7
BraA02t05278Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 2981.8 1864 84.5
Aa31LG11G14050 Aethionema arabicum HOM05D003939 ORTHO05D005979 0.0e+00 2890.1 1870 81.7
THA.LOC104821002 Tarenaya hassleriana HOM05D003939 ORTHO05D005979 0.0e+00 2697.5 1862 75.5
QL02p067905 Quercus lobata HOM05D003939 ORTHO05D005979 0.0e+00 2256.5 1801 65.2
Cfa007652 Carpinus fangiana HOM05D003939 ORTHO05D005979 0.0e+00 2239.5 1859 64.2
Duzib264G0523 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 2229.5 1805 65.0
Manes.01G097400 Manihot esculenta HOM05D003939 ORTHO05D005979 0.0e+00 2229.5 1811 64.7
Potri.017G092600 Populus trichocarpa HOM05D003939 ORTHO05D005979 0.0e+00 2226.4 1813 65.1
Ciclev10010894m.g Citrus clementina HOM05D003939 ORTHO05D005979 0.0e+00 2223.7 1821 64.5
Thecc.04G092900 Theobroma cacao HOM05D003939 ORTHO05D005979 0.0e+00 2219.5 1835 64.3
Gohir.A09G010200 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 2187.9 1826 63.4
PGR083G1596 Punica granatum HOM05D003939 ORTHO05D005979 0.0e+00 2186.4 1818 63.5
Sabra17G0081700 Salix brachista HOM05D003939 ORTHO05D005979 0.0e+00 2186.0 1842 63.2
COL.COLO4_21400 Corchorus olitorius HOM05D003939 ORTHO05D005979 0.0e+00 2185.6 1863 62.9
Gorai.006G011000 Gossypium raimondii HOM05D003939 ORTHO05D005979 0.0e+00 2182.5 1867 62.3
MD17G1057600 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 2167.9 1804 63.4
CSS0011135 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 0.0e+00 2166.7 1799 63.1
TWI60G0125 Tripterygium wilfordii HOM05D003939 ORTHO05D005979 0.0e+00 2166.3 1814 63.0
Dinv33821 Davidia involucrata HOM05D003939 ORTHO05D005979 0.0e+00 2162.1 1779 63.6
Prupe.3G256700 Prunus persica HOM05D003939 ORTHO05D005979 0.0e+00 2162.1 1816 63.6
MD09G1064300 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 2140.9 1816 62.9
CANSAT64G0725 Cannabis sativa HOM05D003939 ORTHO05D005979 0.0e+00 2139.8 1819 62.0
Atru.chr8.419 Acer truncatum HOM05D003939 ORTHO05D005979 0.0e+00 2138.2 1702 66.3
GSVIVG01011514001 Vitis vinifera HOM05D003939 ORTHO05D005979 0.0e+00 2132.8 1811 62.7
Lalb_Chr06g0175001 Lupinus albus HOM05D003939 ORTHO05D005979 0.0e+00 2097.0 1813 61.2
Glyma.13G057300 Glycine max HOM05D003939 ORTHO05D005979 0.0e+00 2090.8 1819 61.0
Sed0008583 Sechium edule HOM05D003939 ORTHO05D005979 0.0e+00 2083.9 1852 59.5
RcHm_v2.0_Chr2g0166131 Rosa chinensis HOM05D003939 ORTHO05D005979 0.0e+00 2081.6 1854 61.9
Nn3g17411 Nelumbo nucifera HOM05D003939 ORTHO05D005979 0.0e+00 2075.1 1806 61.2
Eucgr.J01370 Eucalyptus grandis HOM05D003939 ORTHO05D005979 0.0e+00 2064.7 1818 61.4
FAN05G1397 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2063.5 1853 61.1
FAN09G4101 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2059.3 1853 60.9
FvH4_6g47080 Fragaria vesca HOM05D003939 ORTHO05D005979 0.0e+00 2056.6 1854 60.9
VMungo0464G1977 Vigna mungo HOM05D003939 ORTHO05D005979 0.0e+00 2053.5 1873 59.5
Medtr6g015060 Medicago truncatula HOM05D003939 ORTHO05D005979 0.0e+00 2051.6 1825 59.9
FAN02G0596 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2049.6 1854 60.8
arahy.Tifrunner.gnm1.ann1.U2J8P8 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 2049.2 1833 60.0
Phvul.004G035100 Phaseolus vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 2041.5 1818 60.3
arahy.Tifrunner.gnm1.ann1.HNPA74 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 2033.8 1867 59.0
Duzib187G1101 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 2033.8 1812 60.1
Lj2g0019419 Lotus japonicus HOM05D003939 ORTHO05D005979 0.0e+00 2028.4 1832 59.9
Rhsim10G0043700 Rhododendron simsii HOM05D003939 ORTHO05D005979 0.0e+00 2028.4 1881 58.2
vmacro05651 Vaccinium macrocarpon HOM05D003939 ORTHO05D005979 0.0e+00 2021.1 1837 59.3
CsaV3_4G008740 Cucumis sativus L. HOM05D003939 ORTHO05D005979 0.0e+00 2011.5 1713 62.3
FAN14G2443 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2006.9 1853 60.1
Cc07_g03930 Coffea canephora HOM05D003939 ORTHO05D005979 0.0e+00 1991.5 1810 59.1
Ca_04301_v3 Cicer arietinum L. HOM05D003939 ORTHO05D005979 0.0e+00 1988.4 1629 63.4
DCAR_025422 Daucus carota HOM05D003939 ORTHO05D005979 0.0e+00 1968.4 1835 57.6
ECA246G3607 Erigeron canadensis HOM05D003939 ORTHO05D005979 0.0e+00 1965.3 1847 57.4
AUR62018173 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 1963.0 1799 58.3
Migut.H00638 Erythranthe guttata HOM05D003939 ORTHO05D005979 0.0e+00 1954.9 1813 57.6
AUR62042423 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 1952.9 1804 58.2
SGA_v2.0_scaffold52G19175 Striga asiatica HOM05D003939 ORTHO05D005979 0.0e+00 1952.6 1823 57.8
Sopen03g014250 Solanum pennellii HOM05D003939 ORTHO05D005979 0.0e+00 1947.9 1817 57.8
TPR.G10018 Trifolium pratense HOM05D003939 ORTHO05D005979 0.0e+00 1945.2 1789 59.1
PSO013G0104 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 1922.5 1835 56.7
MELO3C016065.2 Cucumis melo HOM05D003939 ORTHO05D005979 0.0e+00 1922.1 1832 57.6
MSTRG.3009 Avicennia marina HOM05D003939 ORTHO05D005979 0.0e+00 1921.0 1817 57.5
Actinidia01988 Actinidia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 1918.3 1496 66.0
CAN.G381.1 Capsicum annuum HOM05D003939 ORTHO05D005979 0.0e+00 1916.4 1802 57.3
Aqoxy3G03594 Aquilegia oxysepala HOM05D003939 ORTHO05D005979 0.0e+00 1916.0 1798 57.5
Sc10g0004620 Simmondsia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 1915.2 1628 62.3
Haze_14442 Corylus avellana HOM05D003939 ORTHO05D005979 0.0e+00 1901.7 1457 67.7
Lsat_1_v5_gn_3_98161 Lactuca sativa HOM05D003939 ORTHO05D005979 0.0e+00 1901.3 1856 55.8
Hund13156 Selenicereus undatus HOM05D003939 ORTHO05D005979 0.0e+00 1878.2 1866 55.9
Solyc03g059420.4 Solanum lycopersicum HOM05D003939 ORTHO05D005979 0.0e+00 1860.1 1731 58.0
HanXRQChr17g0546541 Helianthus annuus HOM05D003939 ORTHO05D005979 0.0e+00 1857.8 1798 56.0
EL10Ac2g03123 Beta vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 1847.8 1810 55.8
ClCG07G007360 Citrullus lanatus HOM05D003939 ORTHO05D005979 0.0e+00 1842.8 1465 65.0
MBI19_g03793_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D005979 0.0e+00 1835.5 1559 62.3
Nitab4.5_0002960g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 1833.9 1719 58.1
Ah.10g032070 Amaranthus hybridus HOM05D003939 ORTHO05D005979 0.0e+00 1790.0 1874 53.9
Psat1g067400 Pisum sativum HOM05D003939 ORTHO05D005979 0.0e+00 1784.6 1877 53.8
Lju41A4T71 Lonicera japonica HOM05D003939 ORTHO05D005979 0.0e+00 1781.1 1541 61.8
Peaxi162Scf00451g00326 Petunia axillaris HOM05D003939 ORTHO05D005979 0.0e+00 1758.8 1601 59.0
SHI25772 Sapria himalayana HOM05D003939 ORTHO05D005979 0.0e+00 1744.2 1752 54.6
Nitab4.5_0001637g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 1671.0 1708 54.6
Gohir.D09G009300 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 1668.7 1349 64.0
ATR0064G076 Amborella trichopoda HOM05D003939 ORTHO05D005979 0.0e+00 1622.1 1507 57.1
Zm00001eb298600 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1598.9 1802 50.2
Zm00001eb118180 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1585.5 1613 53.8
PSO063G3321 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 1397.5 1430 54.1
Mapoly0011s0050 Marchantia polymorpha HOM05D003939 ORTHO05D005979 0.0e+00 1381.7 1811 44.7
SMO116G0168 Selaginella moellendorffii HOM05D003939 ORTHO05D005979 0.0e+00 1300.4 1780 43.5
Pp3c15_14600 Physcomitrium patens HOM05D003939 ORTHO05D005979 0.0e+00 1294.6 1817 42.9
AagrBONN_evm.TU.Sc2ySwM_344.3096 Anthoceros agrestis HOM05D003939 ORTHO05D005979 0.0e+00 1279.2 1787 41.3
TAR371G0557 Trochodendron aralioides HOM05D003939 ORTHO05D005979 0.0e+00 1243.0 954 67.0
Oeu007060.1 Olea europaea HOM05D003939 ORTHO05D005979 0.0e+00 1179.5 1253 54.0
Glyma.19G029100 Glycine max HOM05D003939 ORTHO05D005979 0.0e+00 1169.5 1049 60.4
CARHR197770 Cardamine hirsuta HOM05D003939 ORTHO05D005979 0.0e+00 1162.9 640 91.1
HPP92_012299 Vanilla planifolia HOM05D003939 ORTHO05D005979 5.4e-297 1025.4 964 56.2
SEGI_00927 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 2.8e-293 1013.1 1090 52.0
CBR_g19320 Chara braunii HOM05D003939 ORTHO05D005979 2.6e-291 1006.5 1532 39.7
Os07g0110400 Oryza sativa ssp. japonica HOM05D003939 ORTHO05D005979 1.3e-274 951.0 926 56.2
TAR371G1006 Trochodendron aralioides HOM05D003939 ORTHO05D005979 1.5e-230 804.7 824 54.2
CiPaw.03G089600 Carya illinoinensis HOM05D003939 ORTHO05D005979 9.8e-222 775.4 703 61.5
HPP92_012253 Vanilla planifolia HOM05D003939 ORTHO05D005979 2.5e-185 654.4 922 44.7
Psat0s5863g0080 Pisum sativum HOM05D003939 ORTHO05D005979 2.3e-178 631.3 508 63.0
Glyma.19G029000 Glycine max HOM05D003939 ORTHO05D005979 4.5e-166 590.5 526 58.4
HPP92_012298 Vanilla planifolia HOM05D003939 ORTHO05D005979 1.6e-155 555.4 750 44.8
Cpa.g.sc2744.1 Carica papaya HOM05D003939 ORTHO05D005979 3.1e-151 541.2 436 64.7
CSS0005126 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 8.5e-141 506.5 520 53.1
PGSC0003DMG400012376 Solanum tuberosum HOM05D003939 ORTHO05D005979 1.8e-138 498.8 466 57.3
SEGI_06328 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 8.8e-130 469.9 521 48.2
DCAR_026524 Daucus carota HOM05D003939 ORTHO05D005979 6.5e-125 453.8 558 47.0
CDE04G2810 Ceratophyllum demersum HOM05D003939 ORTHO05D005979 2.1e-123 448.7 469 52.2
Gohir.1Z049344 Gossypium hirsutum HOM05D003939 ORTHO05D005979 3.1e-119 434.9 483 54.0
CSS0039149 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 3.5e-118 431.4 490 49.6
Cpa.g.sc14.167 Carica papaya HOM05D003939 ORTHO05D005979 1.3e-101 376.3 292 65.4
SEGI_04445 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 6.6e-93 347.4 282 61.3
SEGI_32509 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 1.5e-92 346.3 370 48.6
Hma1.2p1_0481F.1_g162010 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 1.6e-91 342.8 357 51.3
HPP92_012254 Vanilla planifolia HOM05D003939 ORTHO05D005979 2.8e-91 342.0 333 53.2
Prupe.2G279500 Prunus persica HOM05D003939 ORTHO05D005979 6.0e-86 324.3 428 48.1
Psat0s5863g0040 Pisum sativum HOM05D003939 ORTHO05D005979 2.4e-82 312.4 331 53.2
Cre06.g278269 Chlamydomonas reinhardtii HOM05D003939 ORTHO05D005979 1.3e-72 280.0 1678 22.6
ClCG07G007370 Citrullus lanatus HOM05D003939 ORTHO05D005979 1.5e-57 229.9 316 41.8
BolC9t58997H Brassica oleracea HOM05D003939 ORTHO05D005979 3.2e-55 222.2 120 92.5
Psat0s9359g0040 Pisum sativum HOM05D003939 ORTHO05D005979 2.9e-48 199.1 190 57.4
C09p61560 Brassica napus HOM05D003939 ORTHO05D013368 2.7e-46 192.6 139 71.9
MCO01G540 Micromonas commoda HOM05D003939 ORTHO05D005979 8.2e-43 181.0 405 30.6
CiPaw.03G089700 Carya illinoinensis HOM05D003939 ORTHO05D005979 2.1e-38 166.4 175 48.6
Hma1.2p1_0481F.1_g162030 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 4.1e-34 152.1 238 39.5
CSS0004390 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 1.0e-32 147.5 232 35.8
HPP92_012255 Vanilla planifolia HOM05D003939 ORTHO05D005979 8.5e-32 144.4 444 28.4
Lju41A4T72 Lonicera japonica HOM05D003939 ORTHO05D005979 1.4e-31 143.7 136 58.1
C09p61570 Brassica napus HOM05D003939 ORTHO05D005979 2.7e-30 139.4 78 88.5
BolC9t58995H Brassica oleracea HOM05D003939 ORTHO05D013368 3.0e-29 136.0 91 78.0
Cpa.g.c43937 Carica papaya HOM05D003939 ORTHO05D005979 5.7e-28 131.7 70 90.0
Psat5g278520 Pisum sativum HOM05D003939 ORTHO05D030477 1.2e-25 124.0 92 66.3
MBI06_g03947_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 5.0e-24 118.6 108 57.4
CAN.G61.23 Capsicum annuum HOM05D003939 ORTHO05D005979 1.4e-23 117.1 117 51.3
Psat3g154360 Pisum sativum HOM05D003939 ORTHO05D030477 1.2e-22 114.0 90 64.4
Psat3g154320 Pisum sativum HOM05D003939 ORTHO05D030477 1.0e-21 110.9 90 63.3
Glyma.01G130950 Glycine max HOM05D003939 ORTHO05D005979 1.8e-21 110.2 98 56.1
MELO3C001621.2 Cucumis melo HOM05D003939 ORTHO05D005979 8.8e-21 107.8 78 62.8
MELO3C000805.2 Cucumis melo HOM05D003939 ORTHO05D005979 2.4e-18 99.8 90 53.3
Atru.chr8.420 Acer truncatum HOM05D003939 ORTHO05D013368 4.1e-18 99.0 89 61.8
arahy.Tifrunner.gnm1.ann1.HI697U Arachis hypogaea HOM05D001278 ORTHO05D005979 4.5e-17 95.5 88 56.8
TAR376G0271 Trochodendron aralioides HOM05D003939 ORTHO05D009412 1.0e-16 94.4 107 50.5
TAR376G0356 Trochodendron aralioides HOM05D003939 ORTHO05D009412 2.9e-16 92.8 107 49.5
arahy.Tifrunner.gnm1.ann1.BV8AZF Arachis hypogaea HOM05D001278 ORTHO05D004786 3.8e-16 92.4 67 67.2
TPR.G3973 Trifolium pratense HOM05D003939 ORTHO05D005979 8.5e-16 91.3 191 34.6
TAR629G0495 Trochodendron aralioides HOM05D003939 ORTHO05D005979 1.5e-15 90.5 68 72.1
MBI19_g03794_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 2.1e-14 86.7 222 35.6
Hma1.2p1_0481F.1_g162040 Hydrangea macrophylla HOM05D003939 ORTHO05D013368 6.1e-14 85.1 82 54.9
Solyc03g059400.1 Solanum lycopersicum HOM05D003939 ORTHO05D013368 8.0e-14 84.7 88 54.5
MELO3C001721.2 Cucumis melo HOM05D003939 ORTHO05D005979 2.0e-12 80.1 61 57.4
Nitab4.5_0001637g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 2.0e-12 80.1 72 55.6
Nitab4.5_0002960g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 4.8e-11 75.5 72 54.2
PSO063G0192 Papaver somniferum HOM05D001862 ORTHO05D005979 8.3e-11 74.7 103 40.8
Psat5g164760 Pisum sativum HOM05D003939 ORTHO05D005979 9.1e-10 71.2 53 62.3
TAR629G2192 Trochodendron aralioides HOM05D003939 ORTHO05D013368 9.1e-10 71.2 94 42.6
ATR0035G002 Amborella trichopoda HOM05D003939 ORTHO05D013368 3.5e-09 69.3 69 52.2
ATR1045G001 Amborella trichopoda HOM05D003939 ORTHO05D013368 3.5e-09 69.3 69 52.2
SEGI_31617 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 3.5e-09 69.3 287 26.8
C06p42400 Brassica napus HOM05D011400 ORTHO05D014089 7.7e-09 68.2 50 64.0
C06p42460 Brassica napus HOM05D011400 ORTHO05D014089 7.7e-09 68.2 50 64.0
SEGI_38119 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 1.0e-08 67.8 154 29.2
ATR0064G012 Amborella trichopoda HOM05D003939 ORTHO05D013368 1.3e-08 67.4 69 50.7
C03p83880 Brassica napus HOM05D006735 ORTHO05D009558 1.1e-07 64.3 37 75.7
BcaC08g46185 Brassica carinata HOM05D011400 ORTHO05D014089 7.2e-07 61.6 36 75.0
C09p14870 Brassica napus HOM05D011400 ORTHO05D014089 7.2e-07 61.6 36 75.0
MBI19_g32131_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 1.2e-06 60.8 54 61.1
EL10Ac2g03124 Beta vulgaris HOM05D005544 ORTHO05D007303 8.0e-06 58.2 106 36.8


User provided reference genes

Program Settings