Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G34140 Arabidopsis thaliana HOM05D007081 ORTHO05D008834 9.2e-266 919.8 530 100.0
AL7G17230 Arabidopsis lyrata HOM05D007081 ORTHO05D008834 1.5e-231 806.2 532 90.0
Carub.0007s0626 Capsella rubella HOM05D007081 ORTHO05D008834 7.9e-209 730.7 533 83.9
Thhalv10025133m.g Eutrema salsugineum HOM05D007081 ORTHO05D008834 3.4e-183 645.6 535 69.7
Sp7g31890 Schrenkiella parvula HOM05D007081 ORTHO05D008834 1.4e-168 597.0 515 69.9
C01p04690 Brassica napus HOM05D007081 ORTHO05D008834 1.1e-154 550.8 524 64.7
BolC1t00453H Brassica oleracea HOM05D007081 ORTHO05D008834 3.3e-154 549.3 524 64.5
BraA01t00418Z Brassica rapa HOM05D007081 ORTHO05D008834 7.6e-151 538.1 494 63.8
Aa31LG2G16580 Aethionema arabicum HOM05D007081 ORTHO05D008834 6.4e-150 535.0 561 56.7
A01p04290 Brassica napus HOM05D007081 ORTHO05D008834 5.4e-149 531.9 499 63.1
THA.LOC104809251 Tarenaya hassleriana HOM05D007081 ORTHO05D008834 1.3e-137 494.2 546 53.8
CANSAT80G0092 Cannabis sativa HOM05D007081 ORTHO05D008834 1.1e-96 358.2 544 44.9
Thecc.03G023800 Theobroma cacao HOM05D007081 ORTHO05D008834 3.6e-92 343.2 532 43.2
Gorai.005G133700 Gossypium raimondii HOM05D007081 ORTHO05D008834 1.3e-86 324.7 524 43.3
QL10p008493 Quercus lobata HOM05D007081 ORTHO05D008834 1.7e-86 324.3 524 44.5
Cfa019177 Carpinus fangiana HOM05D007081 ORTHO05D008834 2.9e-86 323.6 528 44.7
QL10p008625 Quercus lobata HOM05D007081 ORTHO05D008834 2.9e-86 323.6 524 44.3
TWI39G1151 Tripterygium wilfordii HOM05D007081 ORTHO05D008834 5.0e-86 322.8 527 42.9
Gohir.D02G120200 Gossypium hirsutum HOM05D007081 ORTHO05D008834 1.1e-85 321.6 524 42.9
Duzib205G1440 Durio zibethinus HOM05D007081 ORTHO05D008834 3.2e-85 320.1 570 42.1
Manes.14G062600 Manihot esculenta HOM05D007081 ORTHO05D008834 4.0e-83 313.2 534 43.6
Haze_07555 Corylus avellana HOM05D007081 ORTHO05D008834 6.7e-83 312.4 517 44.1
Dinv38554 Davidia involucrata HOM05D007081 ORTHO05D008834 1.2e-82 311.6 429 44.1
PGR044G1978 Punica granatum HOM05D007081 ORTHO05D008834 4.8e-81 306.2 538 41.1
CAN.G338.9 Capsicum annuum HOM05D007081 ORTHO05D008834 1.4e-80 304.7 528 42.2
Ciclev10023760m.g Citrus clementina HOM05D007081 ORTHO05D008834 1.4e-80 304.7 537 42.6
TAR629G3400 Trochodendron aralioides HOM05D007081 ORTHO05D008834 4.1e-80 303.1 538 43.9
Sc04g0001640 Simmondsia chinensis HOM05D007081 ORTHO05D008834 3.5e-79 300.1 500 43.2
Sopen03g031570 Solanum pennellii HOM05D007081 ORTHO05D008834 3.5e-79 300.1 540 41.9
FAN08G1021 Fragaria x ananassa HOM05D007081 ORTHO05D008834 1.7e-78 297.7 524 42.9
RcHm_v2.0_Chr7g0192971 Rosa chinensis HOM05D007081 ORTHO05D008834 3.8e-78 296.6 527 42.1
Solyc03g112510.2 Solanum lycopersicum HOM05D007081 ORTHO05D008834 6.5e-78 295.8 540 41.5
arahy.Tifrunner.gnm1.ann1.4N1ELM Arachis hypogaea HOM05D007081 ORTHO05D008834 8.5e-78 295.4 565 39.3
Lj5A128T65 Lonicera japonica HOM05D007081 ORTHO05D008834 1.5e-77 294.7 535 41.9
PGSC0003DMG400018175 Solanum tuberosum HOM05D007081 ORTHO05D008834 1.5e-77 294.7 543 42.0
FvH4_5g05850 Fragaria vesca HOM05D007081 ORTHO05D008834 2.5e-77 293.9 524 41.2
ECA247G4072 Erigeron canadensis HOM05D007081 ORTHO05D008834 3.2e-77 293.5 530 42.1
MD14G1175400 Malus domestica HOM05D007081 ORTHO05D008834 3.2e-77 293.5 531 41.8
Lsat_1_v5_gn_1_28080 Lactuca sativa HOM05D007081 ORTHO05D008834 4.2e-77 293.1 538 42.2
Cc04_g12600 Coffea canephora HOM05D007081 ORTHO05D008834 5.5e-77 292.7 542 41.7
Rhsim12G0166600 Rhododendron simsii HOM05D007081 ORTHO05D008834 1.2e-76 291.6 532 42.1
vmacro16631 Vaccinium macrocarpon HOM05D007081 ORTHO05D008834 3.6e-76 290.0 425 43.5
GSVIVG01007682001 Vitis vinifera HOM05D007081 ORTHO05D008834 4.7e-76 289.7 535 41.3
DCAR_016469 Daucus carota HOM05D007081 ORTHO05D008834 2.3e-75 287.3 503 42.7
Potri.002G197500 Populus trichocarpa HOM05D007081 ORTHO05D008834 6.8e-75 285.8 544 41.2
MBI10_g32034_MAGBIO Magnolia biondii HOM05D007081 ORTHO05D008834 1.2e-74 285.0 545 36.5
HanXRQChr04g0101311 Helianthus annuus HOM05D007081 ORTHO05D008834 2.0e-74 284.3 518 40.3
TPR.G31056 Trifolium pratense HOM05D007081 ORTHO05D008834 5.7e-74 282.7 568 39.6
Sabra02G0160000 Salix brachista HOM05D007081 ORTHO05D008834 7.5e-74 282.3 564 41.0
CARHR242710 Cardamine hirsuta HOM05D007081 ORTHO05D008834 1.3e-73 281.6 239 64.9
Peaxi162Scf00089g01519 Petunia axillaris HOM05D007081 ORTHO05D008834 1.3e-73 281.6 537 41.2
SGA_v2.0_scaffold90G27870 Striga asiatica HOM05D007081 ORTHO05D008834 1.3e-73 281.6 446 40.4
Oeu040853.3 Olea europaea HOM05D007081 ORTHO05D008834 1.7e-73 281.2 549 38.4
Sed0005220 Sechium edule HOM05D007081 ORTHO05D008834 2.8e-73 280.4 563 35.5
Lj1g0004270 Lotus japonicus HOM05D007081 ORTHO05D008834 4.8e-73 279.6 582 38.7
Migut.O00134 Erythranthe guttata HOM05D007081 ORTHO05D008834 8.3e-73 278.9 541 40.7
Eucgr.K02814 Eucalyptus grandis HOM05D007081 ORTHO05D008834 1.8e-72 277.7 534 40.1
Lalb_Chr11g0070341 Lupinus albus HOM05D007081 ORTHO05D008834 4.1e-72 276.6 583 39.1
FAN18G1088 Fragaria x ananassa HOM05D007081 ORTHO05D008834 5.4e-72 276.2 566 38.5
CiPaw.11G022400 Carya illinoinensis HOM05D007081 ORTHO05D008834 1.2e-71 275.0 531 37.7
Ca_16151_v3 Cicer arietinum L. HOM05D007081 ORTHO05D008834 4.5e-71 273.1 550 39.1
Nitab4.5_0010304g0020 Nicotiana tabacum HOM05D007081 ORTHO05D008834 5.9e-71 272.7 531 41.1
Aqoxy3G02825 Aquilegia oxysepala HOM05D007081 ORTHO05D008834 1.3e-70 271.6 425 40.0
Phvul.009G175500 Phaseolus vulgaris HOM05D007081 ORTHO05D008834 6.5e-70 269.2 454 39.6
PSO063G2349 Papaver somniferum HOM05D007081 ORTHO05D008834 5.5e-69 266.2 525 38.7
Glyma.04G186500 Glycine max HOM05D007081 ORTHO05D008834 2.8e-68 263.8 458 39.1
Hund02770 Selenicereus undatus HOM05D007081 ORTHO05D008834 1.0e-67 261.9 566 38.7
Psat0s2597g0120 Pisum sativum HOM05D007081 ORTHO05D008834 1.7e-65 254.6 459 37.9
arahy.Tifrunner.gnm1.ann1.G5F0QK Arachis hypogaea HOM05D007081 ORTHO05D008834 2.7e-63 247.3 532 37.8
PSO832G3615 Papaver somniferum HOM05D007081 ORTHO05D008834 4.5e-63 246.5 429 37.8
ATR1152G054 Amborella trichopoda HOM05D007081 ORTHO05D008834 1.0e-62 245.4 546 38.1
Nitab4.5_0001284g0100 Nicotiana tabacum HOM05D007081 ORTHO05D008834 3.8e-62 243.4 327 44.6
MELO3C026274.2 Cucumis melo HOM05D007081 ORTHO05D008834 1.1e-61 241.9 446 36.5
unitig_26.g9614 Utricularia gibba HOM05D007081 ORTHO05D008834 2.8e-60 237.3 373 40.8
CDE06G1300 Ceratophyllum demersum HOM05D007081 ORTHO05D008834 2.3e-59 234.2 525 37.0
AUR62008170 Chenopodium quinoa HOM05D007081 ORTHO05D008834 6.8e-59 232.6 517 37.7
AUR62028747 Chenopodium quinoa HOM05D007081 ORTHO05D008834 2.6e-58 230.7 329 41.9
Cpa.g.sc35.77 Carica papaya HOM05D007081 ORTHO05D008834 5.8e-58 229.6 365 45.5
Medtr3g077300 Medicago truncatula HOM05D007081 ORTHO05D008834 9.8e-58 228.8 433 36.7
CsaV3_1G001260 Cucumis sativus L. HOM05D007081 ORTHO05D008834 1.8e-56 224.6 425 35.1
Zm00001eb122970 Zea mays HOM05D007081 ORTHO05D008834 2.3e-54 217.6 528 33.9
HPP92_000312 Vanilla planifolia HOM05D007081 ORTHO05D008834 5.0e-54 216.5 521 36.7
Ah.02g110780 Amaranthus hybridus HOM05D007081 ORTHO05D008834 6.6e-54 216.1 498 39.0
COL.COLO4_30124 Corchorus olitorius HOM05D007081 ORTHO05D008834 4.3e-53 213.4 531 35.6
EL10Ac5g10689 Beta vulgaris HOM05D007081 ORTHO05D008834 4.7e-52 209.9 556 34.9
ClCG06G017230 Citrullus lanatus HOM05D007081 ORTHO05D008834 5.2e-51 206.5 554 35.0
FAN04G1276 Fragaria x ananassa HOM05D007081 ORTHO05D008834 5.8e-50 203.0 526 37.1
Os01g0170100 Oryza sativa ssp. japonica HOM05D007081 ORTHO05D008834 2.4e-48 197.6 328 39.3
Gohir.A03G091750 Gossypium hirsutum HOM05D007081 ORTHO05D008834 2.5e-45 187.6 307 45.9
HPP92_000296 Vanilla planifolia HOM05D007081 ORTHO05D008834 1.3e-41 175.3 519 33.5
CSS0021917 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 4.1e-40 170.2 314 40.1
AagrBONN_evm.TU.Sc2ySwM_117.2172 Anthoceros agrestis HOM05D007081 ORTHO05D008834 9.2e-40 169.1 520 26.7
CSS0002377 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 2.1e-39 167.9 209 48.8
SEGI_13994 Sequoiadendron giganteum HOM05D007081 ORTHO05D008834 2.1e-39 167.9 467 29.1
Mapoly0102s0046 Marchantia polymorpha HOM05D007081 ORTHO05D008834 1.8e-35 154.8 477 30.4
HPP92_000303 Vanilla planifolia HOM05D007081 ORTHO05D008834 6.4e-33 146.4 313 39.0
Prupe.5G169300 Prunus persica HOM05D007081 ORTHO05D008834 3.0e-30 137.5 285 42.5
Pp3c25_4990 Physcomitrium patens HOM05D007081 ORTHO05D008834 3.6e-28 130.6 534 26.6
Cpa.g.sc35.79 Carica papaya HOM05D007081 ORTHO05D008834 2.4e-27 127.9 110 59.1
Glyma.06G179301 Glycine max HOM05D007081 ORTHO05D008834 1.9e-24 118.2 265 33.6
CBR_g4092 Chara braunii HOM05D007081 ORTHO05D000048 3.5e-23 114.0 400 26.2
CSS0048681 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 2.0e-18 98.2 60 76.7
SGA_v2.0_scaffold90G27873 Striga asiatica HOM05D007081 ORTHO05D008834 4.5e-18 97.1 204 34.3
HPP92_000304 Vanilla planifolia HOM05D007081 ORTHO05D008834 9.9e-18 95.9 107 51.4
CSS0035417 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 1.5e-13 82.0 60 68.3
Oeu015893.1 Olea europaea HOM05D007081 ORTHO05D008834 9.6e-13 79.3 138 40.6
arahy.Tifrunner.gnm1.ann1.JE9H0F Arachis hypogaea HOM05D007081 ORTHO05D008834 1.7e-09 68.6 65 52.3
SEGI_21151 Sequoiadendron giganteum HOM05D007081 ORTHO05D008834 8.4e-09 66.2 81 46.9
Nitab4.5_0022301g0010 Nicotiana tabacum HOM05D007081 ORTHO05D008834 3.2e-08 64.3 199 38.7
Actinidia22110 Actinidia chinensis HOM05D005384 ORTHO05D006477 1.2e-07 62.4 103 34.0
CAN.G12.29 Capsicum annuum HOM05D001989 ORTHO05D000346 1.2e-07 62.4 187 39.6
A09p47220 Brassica napus HOM05D005384 ORTHO05D006477 1.6e-07 62.0 133 34.6
BcaNung06989 Brassica carinata HOM05D005384 ORTHO05D006477 2.1e-07 61.6 133 33.8
C08p29480 Brassica napus HOM05D005384 ORTHO05D006477 2.1e-07 61.6 133 33.8
BolC8t50551H Brassica oleracea HOM05D005384 ORTHO05D006477 2.1e-07 61.6 133 33.8
Sp5g08170 Schrenkiella parvula HOM05D005384 ORTHO05D006477 2.7e-07 61.2 126 33.3
BraA09t40184Z Brassica rapa HOM05D005384 ORTHO05D006477 3.5e-07 60.8 133 33.8
Thhalv10010093m.g Eutrema salsugineum HOM05D005384 ORTHO05D006477 6.0e-07 60.1 126 34.1
CARHR164150 Cardamine hirsuta HOM05D005384 ORTHO05D006477 7.9e-07 59.7 129 33.3
Potri.017G138500 Populus trichocarpa HOM05D005384 ORTHO05D006477 7.9e-07 59.7 122 32.8
Zm00001eb306360 Zea mays HOM05D005384 ORTHO05D006477 7.9e-07 59.7 119 33.6
ATR0743G115 Amborella trichopoda HOM05D005384 ORTHO05D006477 1.3e-06 58.9 114 34.2
AL5G35270 Arabidopsis lyrata HOM05D005384 ORTHO05D006477 1.8e-06 58.5 129 33.3
Carub.0005s2082 Capsella rubella HOM05D005384 ORTHO05D006477 1.8e-06 58.5 127 33.1
Potri.004G081800 Populus trichocarpa HOM05D005384 ORTHO05D006477 1.8e-06 58.5 122 32.0
AT3G54230 Arabidopsis thaliana HOM05D005384 ORTHO05D006477 2.3e-06 58.2 129 33.3
Os02g0167500 Oryza sativa ssp. japonica HOM05D005384 ORTHO05D006477 2.3e-06 58.2 120 33.3
Sabra04G0054400 Salix brachista HOM05D005384 ORTHO05D006477 2.3e-06 58.2 127 32.3
SMO367G0074 Selaginella moellendorffii HOM05D005384 ORTHO05D006477 2.3e-06 58.2 110 34.5
THA.LOC104801042 Tarenaya hassleriana HOM05D005384 ORTHO05D006477 2.3e-06 58.2 123 32.5
Manes.02G081900 Manihot esculenta HOM05D005384 ORTHO05D006477 3.0e-06 57.8 129 30.2
Aa31LG10G6030 Aethionema arabicum HOM05D005384 ORTHO05D006477 5.1e-06 57.0 129 31.0
Nitab4.5_0009567g0040 Nicotiana tabacum HOM05D005384 ORTHO05D006477 5.1e-06 57.0 125 30.4
Aqoxy2G03702_Aqoxy2G03703 Aquilegia oxysepala HOM05D005384 ORTHO05D006477 6.7e-06 56.6 131 28.2
Aqoxy3G02532 Aquilegia oxysepala HOM05D005384 ORTHO05D006477 6.7e-06 56.6 131 28.2
Migut.E00282 Erythranthe guttata HOM05D005384 ORTHO05D006477 6.7e-06 56.6 129 32.6
Nitab4.5_0002055g0100 Nicotiana tabacum HOM05D005384 ORTHO05D006477 6.7e-06 56.6 125 30.4
SGA_v2.0_scaffold14G06795 Striga asiatica HOM05D005384 ORTHO05D006477 6.7e-06 56.6 130 31.5
Solyc08g077310.3 Solanum lycopersicum HOM05D005384 ORTHO05D006477 8.7e-06 56.2 125 30.4
vmacro14142 Vaccinium macrocarpon HOM05D005384 ORTHO05D006477 8.7e-06 56.2 124 30.6


User provided reference genes

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