Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G28780 Arabidopsis lyrata HOM05D001366 ORTHO05D005449 1.9e-53 212.2 107 100.0
AT4G24440 Arabidopsis thaliana HOM05D001366 ORTHO05D005449 1.9e-53 212.2 107 100.0
Thhalv10026637m.g Eutrema salsugineum HOM05D001366 ORTHO05D005449 1.9e-53 212.2 107 100.0
Sp7g22400 Schrenkiella parvula HOM05D001366 ORTHO05D005449 1.9e-53 212.2 107 100.0
Aa31LG4G9540 Aethionema arabicum HOM05D001366 ORTHO05D005449 5.6e-53 210.7 107 99.1
BcaC09g50868 Brassica carinata HOM05D001366 ORTHO05D003220 5.6e-53 210.7 106 99.1
C01p19760 Brassica napus HOM05D001366 ORTHO05D003220 5.6e-53 210.7 106 99.1
BolC1t01904H Brassica oleracea HOM05D001366 ORTHO05D003220 5.6e-53 210.7 106 99.1
Carub.0007s1663 Capsella rubella HOM05D001366 ORTHO05D005449 5.6e-53 210.7 107 99.1
A08p21460 Brassica napus HOM05D001366 ORTHO05D005449 9.5e-53 209.9 107 99.1
BolC8t48576H Brassica oleracea HOM05D001366 ORTHO05D005449 9.5e-53 209.9 107 99.1
BraA08t34095Z Brassica rapa HOM05D001366 ORTHO05D005449 9.5e-53 209.9 107 99.1
CARHR231830 Cardamine hirsuta HOM05D001366 ORTHO05D005449 9.5e-53 209.9 107 98.1
BcaC06g32884 Brassica carinata HOM05D001366 ORTHO05D005449 1.6e-52 209.1 107 98.1
BolC7t45851H Brassica oleracea HOM05D001366 ORTHO05D005449 1.6e-52 209.1 107 98.1
A01p15810 Brassica napus HOM05D001366 ORTHO05D003220 2.1e-52 208.8 105 99.0
BraA01t01516Z Brassica rapa HOM05D001366 ORTHO05D003220 2.1e-52 208.8 105 99.0
THA.LOC104815469 Tarenaya hassleriana HOM05D001366 ORTHO05D005449 2.1e-52 208.8 107 98.1
BcaNung05637 Brassica carinata HOM05D001366 ORTHO05D005449 3.6e-52 208.0 107 97.2
A03p55290 Brassica napus HOM05D001366 ORTHO05D005449 3.6e-52 208.0 107 97.2
C07p53590 Brassica napus HOM05D001366 ORTHO05D005449 3.6e-52 208.0 107 97.2
BraA03t14588Z Brassica rapa HOM05D001366 ORTHO05D005449 3.6e-52 208.0 107 97.2
THA.LOC104799853 Tarenaya hassleriana HOM05D001366 ORTHO05D005449 8.9e-51 203.4 107 95.3
Manes.18G057000 Manihot esculenta HOM05D001366 ORTHO05D005449 1.2e-50 203.0 107 94.4
EL10Ac8g20405 Beta vulgaris HOM05D001366 ORTHO05D005449 2.6e-50 201.8 107 93.5
LjContig00408g0006754 Lotus japonicus HOM05D001366 ORTHO05D005449 4.4e-50 201.1 107 92.5
Glyma.02G216100 Glycine max HOM05D001366 ORTHO05D005449 5.8e-50 200.7 107 92.5
Phvul.008G183300 Phaseolus vulgaris HOM05D001366 ORTHO05D005449 5.8e-50 200.7 107 92.5
PGR042G3224 Punica granatum HOM05D001366 ORTHO05D005449 5.8e-50 200.7 107 93.5
Hund07854 Selenicereus undatus HOM05D001366 ORTHO05D005449 5.8e-50 200.7 107 94.4
EL10Ac9g20840 Beta vulgaris HOM05D001366 ORTHO05D005449 1.3e-49 199.5 107 92.5
FvH4_5g34180 Fragaria vesca HOM05D001366 ORTHO05D005449 1.7e-49 199.1 107 91.6
FAN18G2982 Fragaria x ananassa HOM05D001366 ORTHO05D005449 1.7e-49 199.1 107 91.6
GSVIVG01009213001 Vitis vinifera HOM05D001366 ORTHO05D005449 1.7e-49 199.1 107 91.6
Medtr7g005540 Medicago truncatula HOM05D001366 ORTHO05D005449 2.2e-49 198.7 107 90.7
Glyma.14G183100 Glycine max HOM05D001366 ORTHO05D005449 2.9e-49 198.4 107 92.5
Prupe.1G536300 Prunus persica HOM05D001366 ORTHO05D005449 2.9e-49 198.4 107 91.6
TWI09G0135 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 2.9e-49 198.4 107 91.6
TWI73G1055 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 3.7e-49 198.0 107 91.6
Potri.005G151700 Populus trichocarpa HOM05D001366 ORTHO05D005449 4.9e-49 197.6 107 90.7
Sed0016266 Sechium edule HOM05D001366 ORTHO05D005449 4.9e-49 197.6 107 90.7
Gorai.009G278800 Gossypium raimondii HOM05D001366 ORTHO05D005449 6.4e-49 197.2 107 91.6
Lalb_Chr23g0269931 Lupinus albus HOM05D001366 ORTHO05D005449 8.3e-49 196.8 107 90.7
RcHm_v2.0_Chr7g0233761 Rosa chinensis HOM05D001366 ORTHO05D005449 8.3e-49 196.8 107 90.7
COL.COLO4_35286 Corchorus olitorius HOM05D001366 ORTHO05D005449 1.1e-48 196.4 107 90.7
FAN04G2369 Fragaria x ananassa HOM05D001366 ORTHO05D005449 1.1e-48 196.4 107 89.7
Lalb_Chr08g0242611 Lupinus albus HOM05D001366 ORTHO05D005449 1.1e-48 196.4 107 90.7
Psat2g064960 Pisum sativum HOM05D001366 ORTHO05D005449 1.1e-48 196.4 107 90.7
Aqoxy2G03242 Aquilegia oxysepala HOM05D001366 ORTHO05D005449 1.4e-48 196.1 107 89.7
arahy.Tifrunner.gnm1.ann1.8785AP Arachis hypogaea HOM05D001366 ORTHO05D005449 1.4e-48 196.1 107 90.7
arahy.Tifrunner.gnm1.ann1.CRNC3Y Arachis hypogaea HOM05D001366 ORTHO05D005449 1.4e-48 196.1 107 90.7
Cpa.g.sc21.43 Carica papaya HOM05D001366 ORTHO05D005449 1.4e-48 196.1 107 90.7
arahy.Tifrunner.gnm1.ann1.HU70H8 Arachis hypogaea HOM05D001366 ORTHO05D005449 1.9e-48 195.7 107 90.7
Cc10_g08370 Coffea canephora HOM05D001366 ORTHO05D005449 1.9e-48 195.7 107 92.5
Nitab4.5_0000885g0060 Nicotiana tabacum HOM05D001366 ORTHO05D005449 1.9e-48 195.7 107 91.6
Peaxi162Scf00160g00913 Petunia axillaris HOM05D001366 ORTHO05D005449 1.9e-48 195.7 107 91.6
Sed0015347 Sechium edule HOM05D001366 ORTHO05D005449 1.9e-48 195.7 107 89.7
CANSAT25G2801 Cannabis sativa HOM05D001366 ORTHO05D005449 2.4e-48 195.3 107 89.7
CsaV3_2G033370 Cucumis sativus L. HOM05D001366 ORTHO05D005449 2.4e-48 195.3 107 88.8
DCAR_006444 Daucus carota HOM05D001366 ORTHO05D005449 2.4e-48 195.3 107 90.7
Gohir.A05G264200 Gossypium hirsutum HOM05D001366 ORTHO05D005449 2.4e-48 195.3 107 90.7
Lalb_Chr11g0064851 Lupinus albus HOM05D001366 ORTHO05D005449 2.4e-48 195.3 107 89.7
Rhsim07G0213700 Rhododendron simsii HOM05D001366 ORTHO05D005449 2.4e-48 195.3 107 89.7
ClCG11G014700 Citrullus lanatus HOM05D001366 ORTHO05D005449 3.2e-48 194.9 107 89.7
Ciclev10002917m.g Citrus clementina HOM05D001366 ORTHO05D005449 3.2e-48 194.9 107 89.7
Gohir.D05G266700 Gossypium hirsutum HOM05D001366 ORTHO05D005449 3.2e-48 194.9 107 90.7
Ah.01g003970 Amaranthus hybridus HOM05D001366 ORTHO05D005449 4.1e-48 194.5 107 90.7
arahy.Tifrunner.gnm1.ann1.T41BVH Arachis hypogaea HOM05D001366 ORTHO05D005449 4.1e-48 194.5 107 90.7
Hma1.2p1_0125F.1_g058680 Hydrangea macrophylla HOM05D001366 ORTHO05D005449 4.1e-48 194.5 107 89.7
MBI19_g32700_MAGBIO Magnolia biondii HOM05D001366 ORTHO05D005449 4.1e-48 194.5 107 89.7
Aqoxy6G00666 Aquilegia oxysepala HOM05D001366 ORTHO05D005449 5.4e-48 194.1 107 87.9
CiPaw.08G057200 Carya illinoinensis HOM05D001366 ORTHO05D005449 5.4e-48 194.1 107 88.8
Nn1g05642 Nelumbo nucifera HOM05D001366 ORTHO05D005449 5.4e-48 194.1 107 89.7
TPR.G15622 Trifolium pratense HOM05D001366 ORTHO05D005449 5.4e-48 194.1 105 90.5
PSO013G0324 Papaver somniferum HOM05D001366 ORTHO05D005449 7.1e-48 193.7 107 87.9
HanXRQChr10g0277741 Helianthus annuus HOM05D001366 ORTHO05D005449 9.2e-48 193.4 107 89.7
PSO832G3977 Papaver somniferum HOM05D001366 ORTHO05D005449 9.2e-48 193.4 107 86.9
CiPaw.07G162800 Carya illinoinensis HOM05D001366 ORTHO05D005449 1.2e-47 193.0 107 88.8
ECA240G3991 Erigeron canadensis HOM05D001366 ORTHO05D005449 1.2e-47 193.0 107 89.7
TAR625G0060 Trochodendron aralioides HOM05D001366 ORTHO05D005449 1.2e-47 193.0 107 89.7
Atru.chr13.973 Acer truncatum HOM05D001366 ORTHO05D005449 1.6e-47 192.6 107 88.8
Nitab4.5_0000354g0080 Nicotiana tabacum HOM05D001366 ORTHO05D005449 1.6e-47 192.6 107 90.7
MELO3C008106.2 Cucumis melo HOM05D001366 ORTHO05D005449 2.1e-47 192.2 107 87.9
PSO761G0276 Papaver somniferum HOM05D001366 ORTHO05D005449 2.1e-47 192.2 107 86.9
Gohir.D05G220900 Gossypium hirsutum HOM05D001366 ORTHO05D005449 2.7e-47 191.8 107 88.8
Gorai.009G228000 Gossypium raimondii HOM05D001366 ORTHO05D005449 2.7e-47 191.8 107 88.8
Actinidia29656 Actinidia chinensis HOM05D001366 ORTHO05D005449 3.5e-47 191.4 107 87.9
Thecc.08G074000 Theobroma cacao HOM05D001366 ORTHO05D005449 3.5e-47 191.4 107 88.8
CsaV3_2G033350 Cucumis sativus L. HOM05D001366 ORTHO05D005449 4.6e-47 191.0 107 88.8
Lsat_1_v5_gn_6_107360 Lactuca sativa HOM05D001366 ORTHO05D005449 4.6e-47 191.0 106 87.7
HanXRQChr03g0063191 Helianthus annuus HOM05D001366 ORTHO05D005449 6.0e-47 190.7 107 88.8
Atru.chr11.619 Acer truncatum HOM05D001366 ORTHO05D005449 7.8e-47 190.3 107 86.9
CSS0026904 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D005449 7.8e-47 190.3 107 88.8
PSO700G0345 Papaver somniferum HOM05D001366 ORTHO05D005449 7.8e-47 190.3 107 86.0
PGSC0003DMG400002052 Solanum tuberosum HOM05D001366 ORTHO05D005449 7.8e-47 190.3 107 88.8
CAN.G1104.8 Capsicum annuum HOM05D001366 ORTHO05D005449 1.7e-46 189.1 107 87.9
Duzib041G0019 Durio zibethinus HOM05D001366 ORTHO05D005449 1.7e-46 189.1 107 86.0
Solyc12g088030.2 Solanum lycopersicum HOM05D001366 ORTHO05D005449 1.7e-46 189.1 107 87.9
Sopen12g030060 Solanum pennellii HOM05D001366 ORTHO05D005449 1.7e-46 189.1 107 87.9
ATR0691G175 Amborella trichopoda HOM05D001366 ORTHO05D005449 2.3e-46 188.7 107 86.9
Haze_22489 Corylus avellana HOM05D001366 ORTHO05D005449 2.3e-46 188.7 107 86.9
TWI56G0439 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 2.3e-46 188.7 107 86.9
MSTRG.5323 Avicennia marina HOM05D001366 ORTHO05D005449 3.0e-46 188.3 107 85.0
Eucgr.F00436 Eucalyptus grandis HOM05D001366 ORTHO05D005449 3.0e-46 188.3 107 86.9
Oeu040884.1 Olea europaea HOM05D001366 ORTHO05D005449 3.0e-46 188.3 107 87.9
TPR.G38776 Trifolium pratense HOM05D001366 ORTHO05D005449 6.6e-46 187.2 107 85.0
Os05g0107700 Oryza sativa ssp. japonica HOM05D001366 ORTHO05D005449 1.5e-45 186.0 107 86.0
Medtr5g066740 Medicago truncatula HOM05D001366 ORTHO05D005449 1.9e-45 185.7 107 82.2
Rhsim02G0071900 Rhododendron simsii HOM05D001366 ORTHO05D005449 1.9e-45 185.7 123 78.0
HPP92_010288 Vanilla planifolia HOM05D001366 ORTHO05D005449 1.9e-45 185.7 106 84.9
CSS0031876 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D005449 2.5e-45 185.3 107 85.0
Gohir.A05G216500 Gossypium hirsutum HOM05D001366 ORTHO05D005449 7.3e-45 183.7 117 81.2
MSTRG.27758 Avicennia marina HOM05D001366 ORTHO05D005449 9.5e-45 183.3 107 83.2
SalBow6G3832 Salvia bowleyana HOM05D001366 ORTHO05D005449 9.5e-45 183.3 107 84.1
SalBow6G5818 Salvia bowleyana HOM05D001366 ORTHO05D005449 9.5e-45 183.3 107 84.1
Migut.N01147 Erythranthe guttata HOM05D001366 ORTHO05D005449 1.2e-44 183.0 107 84.1
SalBow3G1925 Salvia bowleyana HOM05D001366 ORTHO05D005449 1.2e-44 183.0 107 84.1
SGA_v2.0_scaffold337G49194 Striga asiatica HOM05D001366 ORTHO05D005449 1.2e-44 183.0 107 84.1
Zm00001eb356100 Zea mays HOM05D001366 ORTHO05D005449 1.6e-44 182.6 107 83.2
Sabra05G0119200 Salix brachista HOM05D001366 ORTHO05D005449 4.7e-44 181.0 133 72.2
Zm00001eb139900 Zea mays HOM05D001366 ORTHO05D005449 1.1e-43 179.9 104 84.6
SGA_v2.0_scaffold219G42523 Striga asiatica HOM05D001366 ORTHO05D005449 2.4e-43 178.7 105 82.9
MSTRG.16686 Avicennia marina HOM05D001366 ORTHO05D005449 6.8e-43 177.2 106 79.2
unitig_22.g6842 Utricularia gibba HOM05D001366 ORTHO05D005449 8.9e-43 176.8 107 79.4
AUR62017035 Chenopodium quinoa HOM05D001366 ORTHO05D005449 1.2e-42 176.4 94 92.6
Os01g0970500 Oryza sativa ssp. japonica HOM05D001366 ORTHO05D005449 1.2e-42 176.4 104 80.8
SHI29728 Sapria himalayana HOM05D001366 ORTHO05D005449 2.6e-42 175.3 107 85.0
MD08G1203900 Malus domestica HOM05D001366 ORTHO05D005449 1.3e-41 172.9 94 89.4
ECA246G1742 Erigeron canadensis HOM05D001366 ORTHO05D005449 1.6e-39 166.0 98 81.6
Psat0s2399g0160 Pisum sativum HOM05D001366 ORTHO05D005449 1.6e-39 166.0 104 75.0
Actinidia19254 Actinidia chinensis HOM05D001366 ORTHO05D005449 8.6e-38 160.2 107 72.0
Oeu038169.3 Olea europaea HOM05D001366 ORTHO05D005449 1.9e-37 159.1 165 57.0
Lsat_1_v5_gn_7_43741 Lactuca sativa HOM05D001366 ORTHO05D005449 1.2e-36 156.4 83 91.6
TAR381G0322 Trochodendron aralioides HOM05D001366 ORTHO05D005449 1.1e-35 153.3 107 72.0
Duzib116G0949 Durio zibethinus HOM05D001366 ORTHO05D005449 5.2e-35 151.0 107 73.8
Mapoly0012s0108 Marchantia polymorpha HOM05D001366 ORTHO05D005449 1.2e-34 149.8 107 62.6
Pp3c9_10830 Physcomitrium patens HOM05D001366 ORTHO05D005449 4.4e-34 147.9 107 64.5
Pp3c15_13540 Physcomitrium patens HOM05D001366 ORTHO05D005449 5.8e-34 147.5 107 64.5
AagrBONN_evm.TU.Sc2ySwM_228.5579 Anthoceros agrestis HOM05D001366 ORTHO05D005449 7.6e-34 147.1 107 60.7
AagrBONN_evm.TU.Sc2ySwM_228.3950 Anthoceros agrestis HOM05D001366 ORTHO05D005449 8.4e-33 143.7 107 59.8
SMO169G0007 Selaginella moellendorffii HOM05D001366 ORTHO05D005449 1.2e-31 139.8 106 59.4
Actinidia19617 Actinidia chinensis HOM05D001366 ORTHO05D005449 9.6e-29 130.2 71 87.3
Migut.B00439 Erythranthe guttata HOM05D001366 ORTHO05D005449 3.1e-27 125.2 107 61.7
RcHm_v2.0_Chr5g0012851 Rosa chinensis HOM05D001366 ORTHO05D005449 3.4e-26 121.7 107 57.9
Lsat_1_v5_gn_4_60280 Lactuca sativa HOM05D001366 ORTHO05D005449 7.1e-24 114.0 66 86.4
unitig_8.g3420 Utricularia gibba HOM05D001366 ORTHO05D005449 1.2e-23 113.2 93 60.2
Dinv42590 Davidia involucrata HOM05D001366 ORTHO05D005449 2.1e-23 112.5 83 74.7
Ca_08744_v3 Cicer arietinum L. HOM05D001366 ORTHO05D005449 6.0e-23 110.9 60 95.0
VMungo0647G1399 Vigna mungo HOM05D001366 ORTHO05D005449 6.0e-23 110.9 60 95.0
QL09p018667 Quercus lobata HOM05D001366 ORTHO05D005449 1.0e-22 110.2 60 95.0
vmacro04625 Vaccinium macrocarpon HOM05D001366 ORTHO05D005449 3.9e-22 108.2 60 91.7
Haze_27711 Corylus avellana HOM05D001366 ORTHO05D005449 5.6e-21 104.4 100 49.0
AagrBONN_evm.TU.Sc2ySwM_368.1269 Anthoceros agrestis HOM05D001366 ORTHO05D005449 1.3e-20 103.2 105 44.8
C06p07570 Brassica napus HOM05D001366 ORTHO05D005449 2.4e-19 99.0 107 57.9
BolC6t35845H Brassica oleracea HOM05D001366 ORTHO05D005449 2.4e-19 99.0 107 57.9
Mapoly0067s0078 Marchantia polymorpha HOM05D001366 ORTHO05D005449 9.9e-18 93.6 98 48.0
BcaC08g43388 Brassica carinata HOM05D001366 ORTHO05D005449 1.7e-17 92.8 87 56.3
AUR62014838 Chenopodium quinoa HOM05D001366 ORTHO05D005449 1.4e-16 89.7 62 77.4
HanXRQChr05g0143271 Helianthus annuus HOM05D001366 ORTHO05D005449 7.9e-15 84.0 51 82.4
Cre10.g424150 Chlamydomonas reinhardtii HOM05D001366 ORTHO05D005449 9.6e-13 77.0 100 36.0
Lsat_1_v5_gn_8_150280 Lactuca sativa HOM05D001675 ORTHO05D004161 2.1e-12 75.9 47 83.0
PRCOL_00001724 Prasinoderma coloniale HOM05D001366 ORTHO05D005449 2.2e-09 65.9 92 32.6
HanXRQChr11g0353851 Helianthus annuus HOM05D001366 ORTHO05D005449 2.5e-08 62.4 36 83.3
Lsat_1_v5_gn_8_45161 Lactuca sativa HOM05D001675 ORTHO05D001808 7.1e-08 60.8 38 84.2
TAR374G0947 Trochodendron aralioides HOM05D000025 ORTHO05D000040 7.9e-07 57.4 34 67.6
Zm00001eb072320 Zea mays HOM05D001366 ORTHO05D446550 8.7e-06 53.9 42 59.5


User provided reference genes

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