Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G12740 Arabidopsis thaliana HOM05D006570 ORTHO05D008193 2.9e-275 951.4 541 100.0
AL9U11910 Arabidopsis lyrata HOM05D006570 ORTHO05D008193 1.3e-227 793.1 499 82.8
CARHR218120 Cardamine hirsuta HOM05D006570 ORTHO05D008193 1.5e-218 763.1 538 75.1
C04p43140 Brassica napus HOM05D006570 ORTHO05D008193 2.5e-218 762.3 541 76.3
Thhalv10024575m.g Eutrema salsugineum HOM05D006570 ORTHO05D008193 9.9e-215 750.4 509 76.6
Carub.0007s3008 Capsella rubella HOM05D006570 ORTHO05D008193 2.9e-214 748.8 427 88.8
A04p09180 Brassica napus HOM05D006570 ORTHO05D008193 3.8e-214 748.4 543 73.1
Sp7g09050 Schrenkiella parvula HOM05D006570 ORTHO05D008193 4.2e-213 745.0 500 78.2
BolC4t25891H Brassica oleracea HOM05D006570 ORTHO05D008193 2.1e-204 716.1 528 73.3
BcaB03g16147 Brassica carinata HOM05D006570 ORTHO05D008193 1.0e-203 713.8 428 84.1
BcaC02g09469 Brassica carinata HOM05D006570 ORTHO05D008193 1.5e-202 709.9 429 83.9
Aa31sc565G50 Aethionema arabicum HOM05D006570 ORTHO05D008193 4.5e-199 698.4 552 67.2
BraA04t16613Z Brassica rapa HOM05D006570 ORTHO05D008193 1.3e-198 696.8 537 69.3
THA.LOC104815379 Tarenaya hassleriana HOM05D006570 ORTHO05D008193 1.5e-183 646.7 552 64.1
Atru.chr6.3468 Acer truncatum HOM05D006570 ORTHO05D008193 4.2e-157 558.9 433 66.5
Cpa.g.sc8.9 Carica papaya HOM05D006570 ORTHO05D008193 2.7e-156 556.2 440 64.8
Duzib133G0843 Durio zibethinus HOM05D006570 ORTHO05D008193 2.6e-154 549.7 437 64.5
Thecc.01G203700 Theobroma cacao HOM05D006570 ORTHO05D008193 2.2e-153 546.6 431 65.4
Potri.014G198000 Populus trichocarpa HOM05D006570 ORTHO05D008193 1.8e-152 543.5 437 64.5
COL.COLO4_19720 Corchorus olitorius HOM05D006570 ORTHO05D008193 1.2e-151 540.8 405 66.7
Manes.13G058200 Manihot esculenta HOM05D006570 ORTHO05D008193 2.7e-151 539.7 432 63.2
TWI18G1431 Tripterygium wilfordii HOM05D006570 ORTHO05D008193 1.5e-149 533.9 416 64.7
Haze_04512 Corylus avellana HOM05D006570 ORTHO05D008193 4.2e-149 532.3 433 62.6
Cfa006298 Carpinus fangiana HOM05D006570 ORTHO05D008193 1.0e-147 527.7 434 61.8
Ciclev10015195m.g Citrus clementina HOM05D006570 ORTHO05D008193 1.8e-147 526.9 427 62.3
Prupe.6G214800 Prunus persica HOM05D006570 ORTHO05D008193 1.5e-146 523.9 407 64.6
Lj3g0023743 Lotus japonicus HOM05D006570 ORTHO05D008193 2.0e-146 523.5 435 60.5
CiPaw.07G077200 Carya illinoinensis HOM05D006570 ORTHO05D008193 4.4e-146 522.3 433 62.8
Gohir.D07G093500 Gossypium hirsutum HOM05D006570 ORTHO05D008193 4.4e-146 522.3 439 61.5
Gorai.001G100200 Gossypium raimondii HOM05D006570 ORTHO05D008193 4.4e-146 522.3 439 61.5
FvH4_3g28500 Fragaria vesca HOM05D006570 ORTHO05D008193 7.5e-146 521.5 425 61.9
Migut.D00755 Erythranthe guttata HOM05D006570 ORTHO05D008193 1.7e-145 520.4 410 65.4
Glyma.07G059700 Glycine max HOM05D006570 ORTHO05D008193 1.8e-144 516.9 421 62.9
Medtr8g028105 Medicago truncatula HOM05D006570 ORTHO05D008193 5.4e-144 515.4 428 61.0
RcHm_v2.0_Chr5g0052821 Rosa chinensis HOM05D006570 ORTHO05D008193 1.2e-143 514.2 411 63.3
Phvul.010G109900 Phaseolus vulgaris HOM05D006570 ORTHO05D008193 2.7e-143 513.1 428 62.1
Lj2A1109T67 Lonicera japonica HOM05D006570 ORTHO05D008193 3.5e-143 512.7 435 60.7
Gohir.A07G088500 Gossypium hirsutum HOM05D006570 ORTHO05D008193 4.5e-143 512.3 434 62.2
Oeu020442.2 Olea europaea HOM05D006570 ORTHO05D008193 1.7e-142 510.4 423 61.0
FAN21G3910 Fragaria x ananassa HOM05D006570 ORTHO05D008193 2.9e-142 509.6 406 63.3
VMungo0331G0798 Vigna mungo HOM05D006570 ORTHO05D008193 2.9e-142 509.6 437 60.4
vmacro02851 Vaccinium macrocarpon HOM05D006570 ORTHO05D008193 3.8e-142 509.2 419 63.2
arahy.Tifrunner.gnm1.ann1.L2UBUE Arachis hypogaea HOM05D006570 ORTHO05D008193 8.6e-142 508.1 430 59.3
TPR.G5123 Trifolium pratense HOM05D006570 ORTHO05D008193 8.6e-142 508.1 432 59.3
Actinidia11648 Actinidia chinensis HOM05D006570 ORTHO05D008193 1.1e-141 507.7 413 62.7
arahy.Tifrunner.gnm1.ann1.N5JW36 Arachis hypogaea HOM05D006570 ORTHO05D008193 1.1e-141 507.7 429 59.0
Dinv28772 Davidia involucrata HOM05D006570 ORTHO05D008193 1.1e-141 507.7 419 62.1
SalBow6G3933 Salvia bowleyana HOM05D006570 ORTHO05D008193 1.1e-141 507.7 429 59.7
CANSAT01G0840 Cannabis sativa HOM05D006570 ORTHO05D008193 1.9e-141 506.9 408 61.5
PGSC0003DMG400020287 Solanum tuberosum HOM05D006570 ORTHO05D008193 1.9e-141 506.9 410 60.7
Ca_23570_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 4.2e-141 505.8 414 61.6
Ca_23579_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 4.2e-141 505.8 414 61.6
Sopen09g012610 Solanum pennellii HOM05D006570 ORTHO05D008193 7.2e-141 505.0 407 61.2
MD15G1141300 Malus domestica HOM05D006570 ORTHO05D008193 9.5e-141 504.6 405 63.5
SalBow2G2795 Salvia bowleyana HOM05D006570 ORTHO05D008193 1.2e-140 504.2 429 59.4
Lalb_Chr10g0100201 Lupinus albus HOM05D006570 ORTHO05D008193 2.8e-140 503.1 413 61.7
PSO170G2695 Papaver somniferum HOM05D006570 ORTHO05D008193 2.8e-140 503.1 433 58.7
Solyc09g018850.3 Solanum lycopersicum HOM05D006570 ORTHO05D008193 3.6e-140 502.7 407 60.9
GSVIVG01004124001 Vitis vinifera HOM05D006570 ORTHO05D008193 1.5e-138 497.3 440 58.9
Aqoxy7G03970 Aquilegia oxysepala HOM05D006570 ORTHO05D008193 2.0e-138 496.9 428 59.1
PGR083G1749 Punica granatum HOM05D006570 ORTHO05D008193 3.4e-138 496.1 414 61.6
ECA236G3480 Erigeron canadensis HOM05D006570 ORTHO05D008193 4.4e-138 495.7 411 62.3
Sabra14G0132400 Salix brachista HOM05D006570 ORTHO05D008193 7.5e-138 495.0 522 53.1
CsaV3_6G007600 Cucumis sativus L. HOM05D006570 ORTHO05D008193 9.8e-138 494.6 428 61.0
Aqoxy1G01428 Aquilegia oxysepala HOM05D006570 ORTHO05D008193 1.7e-137 493.8 428 59.1
Ah.11g050650 Amaranthus hybridus HOM05D006570 ORTHO05D008193 4.9e-137 492.3 426 58.2
Peaxi162Scf12724g00014 Petunia axillaris HOM05D006570 ORTHO05D008193 1.4e-136 490.7 413 59.8
Cc01_g15710 Coffea canephora HOM05D006570 ORTHO05D008193 4.1e-136 489.2 438 58.2
TAR362G0032 Trochodendron aralioides HOM05D006570 ORTHO05D008193 7.0e-136 488.4 411 60.1
Nitab4.5_0005967g0010 Nicotiana tabacum HOM05D006570 ORTHO05D008193 1.6e-135 487.3 416 58.9
HanXRQChr16g0508391 Helianthus annuus HOM05D006570 ORTHO05D008193 2.0e-135 486.9 411 60.3
Hma1.2p1_0834F.1_g225720 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 1.3e-134 484.2 402 61.4
Nitab4.5_0009028g0030 Nicotiana tabacum HOM05D006570 ORTHO05D008193 2.5e-133 479.9 459 56.0
EL10Ac5g10565 Beta vulgaris HOM05D006570 ORTHO05D008193 9.5e-133 478.0 392 60.7
CAN.G3.13 Capsicum annuum HOM05D006570 ORTHO05D008193 1.0e-131 474.6 367 62.7
ClCG06G001630 Citrullus lanatus HOM05D006570 ORTHO05D008193 8.9e-131 471.5 424 59.0
CDE09G0147 Ceratophyllum demersum HOM05D006570 ORTHO05D008193 4.9e-129 465.7 412 58.5
DCAR_012712 Daucus carota HOM05D006570 ORTHO05D008193 2.4e-128 463.4 403 59.8
MBI10_g46813_MAGBIO Magnolia biondii HOM05D006570 ORTHO05D008193 7.8e-127 458.4 415 57.1
SHI10196 Sapria himalayana HOM05D006570 ORTHO05D008193 1.3e-126 457.6 407 56.5
HPP92_007590 Vanilla planifolia HOM05D006570 ORTHO05D008193 3.0e-126 456.4 420 57.1
AUR62028620 Chenopodium quinoa HOM05D006570 ORTHO05D008193 4.3e-125 452.6 428 55.4
Sc05g0001500 Simmondsia chinensis HOM05D006570 ORTHO05D008193 9.5e-125 451.4 412 57.5
Rhsim13G0056200 Rhododendron simsii HOM05D006570 ORTHO05D008193 4.7e-124 449.1 416 56.7
Psat4g158840 Pisum sativum HOM05D006570 ORTHO05D008193 8.0e-124 448.4 368 62.0
AUR62008045 Chenopodium quinoa HOM05D006570 ORTHO05D008193 2.3e-123 446.8 428 55.4
AUR62032342 Chenopodium quinoa HOM05D006570 ORTHO05D008193 2.3e-123 446.8 428 55.4
ATR0743G076 Amborella trichopoda HOM05D006570 ORTHO05D008193 4.0e-123 446.0 403 57.8
Hund09495 Selenicereus undatus HOM05D006570 ORTHO05D008193 6.8e-123 445.3 356 61.2
Os12g0211400 Oryza sativa ssp. japonica HOM05D006570 ORTHO05D008193 2.3e-118 430.3 426 51.9
MELO3C022371.2 Cucumis melo HOM05D006570 ORTHO05D008193 7.3e-117 425.2 418 56.5
Lsat_1_v5_gn_8_98640 Lactuca sativa HOM05D006570 ORTHO05D008193 1.4e-115 421.0 410 55.4
Zm00001eb411200 Zea mays HOM05D006570 ORTHO05D008193 3.4e-114 416.4 405 53.6
Hma1.2p1_0834F.1_g225710 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 3.7e-113 412.9 368 58.4
Os12g0212100 Oryza sativa ssp. japonica HOM05D006570 ORTHO05D008193 7.3e-109 398.7 353 56.7
SEGI_12299 Sequoiadendron giganteum HOM05D006570 ORTHO05D008193 2.6e-106 390.2 438 48.6
FAN25G2405 Fragaria x ananassa HOM05D006570 ORTHO05D008193 3.2e-104 383.3 541 42.3
Pp3c18_200 Physcomitrium patens HOM05D006570 ORTHO05D008193 8.7e-102 375.2 464 46.6
unitig_90.g27554 Utricularia gibba HOM05D006570 ORTHO05D008193 6.2e-100 369.0 427 49.4
Eucgr.H00676 Eucalyptus grandis HOM05D006570 ORTHO05D008193 3.2e-96 356.7 301 59.5
Hma1.2p1_1756F.1_g301050 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 6.6e-94 349.0 322 56.8
Mapoly0043s0062 Marchantia polymorpha HOM05D006570 ORTHO05D008193 4.3e-93 346.3 372 50.0
Actinidia23139 Actinidia chinensis HOM05D006570 ORTHO05D008193 2.6e-90 337.0 409 47.4
MBI10_g40441_MAGBIO Magnolia biondii HOM05D006570 ORTHO05D008193 4.9e-81 306.2 306 52.3
SMO202G0040 Selaginella moellendorffii HOM05D006570 ORTHO05D008193 9.3e-80 302.0 290 54.1
PRCOL_00001086 Prasinoderma coloniale HOM05D006570 ORTHO05D008193 3.2e-72 276.9 401 40.1
FAN11G0847 Fragaria x ananassa HOM05D006570 ORTHO05D008193 3.3e-69 266.9 247 54.7
MCO12G048 Micromonas commoda HOM05D006570 ORTHO05D008193 4.8e-68 263.1 477 37.3
QL01p050877 Quercus lobata HOM05D006570 ORTHO05D008193 1.4e-64 251.5 265 50.9
Cre02.g082000 Chlamydomonas reinhardtii HOM05D006570 ORTHO05D008193 3.0e-54 217.2 240 47.9
GSVIVG01038286001 Vitis vinifera HOM05D006570 ORTHO05D008193 6.1e-47 193.0 186 52.2
CSS0008113 Camellia sinensis var. sinensis HOM05D006570 ORTHO05D008193 1.5e-45 188.3 126 73.0
CSS0032158 Camellia sinensis var. sinensis HOM05D006570 ORTHO05D008193 1.5e-45 188.3 126 73.0
Ca_29093_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 1.1e-43 182.2 274 38.7
QL01p050896 Quercus lobata HOM05D006570 ORTHO05D008193 1.5e-37 161.8 112 71.4
DCAR_012713 Daucus carota HOM05D006570 ORTHO05D008193 1.4e-35 155.2 124 62.9
CDE02G1275 Ceratophyllum demersum HOM05D006570 ORTHO05D008193 1.4e-30 138.7 107 66.4
Glyma.16G028601 Glycine max HOM05D006570 ORTHO05D008193 8.0e-23 112.8 105 52.4
CBR_g38520 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-22 112.5 101 58.4
QL05p014267 Quercus lobata HOM05D006570 ORTHO05D008193 2.0e-21 108.2 192 37.0
PGR142G0081 Punica granatum HOM05D006570 ORTHO05D008193 2.8e-20 104.4 131 48.1
QL05p014599 Quercus lobata HOM05D006570 ORTHO05D008193 1.1e-19 102.4 127 44.1
CBR_g38518 Chara braunii HOM05D000019 ORTHO05D000048 2.4e-11 74.7 140 34.3
Os12g0211301 Oryza sativa ssp. japonica HOM05D006570 ORTHO05D008193 8.9e-06 56.2 62 45.2


User provided reference genes

Program Settings